RNA–Protein interactions for RNA: ENST00000568357.1

VPS39-210, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 2

Gene VPS39, Length 593 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-210ENST00000568357 SUN1O94901 812 aa14.79□□□□□ -0.04
VPS39-210ENST00000568357 RPL10P27635 214 aaKnown RBP14.79□□□□□ -0.04
VPS39-210ENST00000568357 ACTN2P35609 894 aa14.79□□□□□ -0.04
VPS39-210ENST00000568357 FDFT1P37268 417 aa14.79□□□□□ -0.04
VPS39-210ENST00000568357 EIF2S3P41091 472 aaKnown RBP14.79□□□□□ -0.04
VPS39-210ENST00000568357 KCNJ1P48048 391 aa14.79□□□□□ -0.04
VPS39-210ENST00000568357 CDKN1CP49918 316 aaPredicted RBP14.79□□□□□ -0.04
VPS39-210ENST00000568357 HHEXQ03014 270 aa14.79□□□□□ -0.04
VPS39-210ENST00000568357 SQSTM1Q13501 440 aa14.79□□□□□ -0.04
VPS39-210ENST00000568357 GTF2H3Q13889 308 aa14.79□□□□□ -0.04
VPS39-210ENST00000568357 LINC00523Q86TU6 105 aa14.79□□□□□ -0.04
VPS39-210ENST00000568357 PIM3Q86V86 326 aa14.79□□□□□ -0.04
VPS39-210ENST00000568357 MYO18BQ8IUG5 2567 aa14.79□□□□□ -0.04
VPS39-210ENST00000568357 BEND7Q8N7W2 519 aaPredicted RBP14.79□□□□□ -0.04
VPS39-210ENST00000568357 CCDC89Q8N998 374 aa14.79□□□□□ -0.04
VPS39-210ENST00000568357 SGF29Q96ES7 293 aa14.79□□□□□ -0.04
VPS39-210ENST00000568357 CCDC97Q96F63 343 aaPredicted RBP14.79□□□□□ -0.04
VPS39-210ENST00000568357 LIN37Q96GY3 246 aaPredicted RBP14.79□□□□□ -0.04
VPS39-210ENST00000568357 TMEM74Q96NL1 305 aa14.79□□□□□ -0.04
VPS39-210ENST00000568357 SLC38A3Q99624 504 aa14.79□□□□□ -0.04
VPS39-210ENST00000568357 C19orf43Q9BQ61 176 aa14.79□□□□□ -0.04
VPS39-210ENST00000568357 NUDT22Q9BRQ3 303 aa14.79□□□□□ -0.04
VPS39-210ENST00000568357 PRORYQ9H606 182 aa14.79□□□□□ -0.04
VPS39-210ENST00000568357 RAB6BQ9NRW1 208 aa14.79□□□□□ -0.04
VPS39-210ENST00000568357 TRMT1Q9NXH9 659 aaKnown RBP14.79□□□□□ -0.04
VPS39-210ENST00000568357 KCNK4Q9NYG8 393 aa14.79□□□□□ -0.04
VPS39-210ENST00000568357 ZNF624Q9P2J8 865 aaPredicted RBP14.79□□□□□ -0.04
VPS39-210ENST00000568357 CPNE7Q9UBL6 633 aa14.79□□□□□ -0.04
VPS39-210ENST00000568357 ZKSCAN5Q9Y2L8 839 aa14.79□□□□□ -0.04
VPS39-210ENST00000568357 JRKLQ9Y4A0 524 aa14.79□□□□□ -0.04
VPS39-210ENST00000568357 PCDHGA8Q9Y5G5 932 aa14.79□□□□□ -0.04
VPS39-210ENST00000568357 KIR2DS5A0A0G2JLQ3 304 aa14.78□□□□□ -0.04
VPS39-210ENST00000568357 A0A0G2JNG1 304 aa14.78□□□□□ -0.04
VPS39-210ENST00000568357 MROH6A6NGR9 719 aa14.78□□□□□ -0.04
VPS39-210ENST00000568357 OR5K4A6NMS3 321 aa14.78□□□□□ -0.04
VPS39-210ENST00000568357 ERI2A8K979 691 aaKnown RBP14.78□□□□□ -0.04
VPS39-210ENST00000568357 J3QKU1 62 aa14.78□□□□□ -0.04
VPS39-210ENST00000568357 KIR2DS3K7RE56 304 aa14.78□□□□□ -0.04
VPS39-210ENST00000568357 ZW10O43264 779 aa14.78□□□□□ -0.04
VPS39-210ENST00000568357 HGFP14210 728 aa14.78□□□□□ -0.04
VPS39-210ENST00000568357 BRAFP15056 766 aa14.78□□□□□ -0.04
VPS39-210ENST00000568357 XRCC1P18887 633 aaPredicted RBP14.78□□□□□ -0.04
VPS39-210ENST00000568357 MSH3P20585 1137 aa14.78□□□□□ -0.04
VPS39-210ENST00000568357 HADHAP40939 763 aa14.78□□□□□ -0.04
VPS39-210ENST00000568357 DRG2P55039 364 aaKnown RBP14.78□□□□□ -0.04
VPS39-210ENST00000568357 UBE2IP63279 158 aaKnown RBP14.78□□□□□ -0.04
VPS39-210ENST00000568357 SEMA5AQ13591 1074 aa14.78□□□□□ -0.04
VPS39-210ENST00000568357 KIR2DS5Q14953 304 aa14.78□□□□□ -0.04
VPS39-210ENST00000568357 SEPT7Q16181 437 aaKnown RBP14.78□□□□□ -0.04
VPS39-210ENST00000568357 CCDC38Q502W7 563 aa14.78□□□□□ -0.04
VPS39-210ENST00000568357 FNBP1LQ5T0N5 605 aa14.78□□□□□ -0.04
VPS39-210ENST00000568357 IGF2-ASQ6U949 168 aa14.78□□□□□ -0.04
VPS39-210ENST00000568357 ABRAXAS1Q6UWZ7 409 aa14.78□□□□□ -0.04
VPS39-210ENST00000568357 DET1Q7L5Y6 550 aa14.78□□□□□ -0.04
VPS39-210ENST00000568357 RAB11FIP2Q7L804 512 aa14.78□□□□□ -0.04
VPS39-210ENST00000568357 SLC9B2Q86UD5 537 aa14.78□□□□□ -0.04
VPS39-210ENST00000568357 AMZ2Q86W34 360 aa14.78□□□□□ -0.04
VPS39-210ENST00000568357 FBXO39Q8N4B4 442 aa14.78□□□□□ -0.04
VPS39-210ENST00000568357 PRELID2Q8N945 189 aa14.78□□□□□ -0.04
VPS39-210ENST00000568357 SNIP1Q8TAD8 396 aaKnown RBP14.78□□□□□ -0.04
VPS39-210ENST00000568357 MAIP1Q8WWC4 291 aa14.78□□□□□ -0.04
VPS39-210ENST00000568357 CDKN2AIPNLQ96HQ2 116 aa14.78□□□□□ -0.04
VPS39-210ENST00000568357 MS4A14Q96JA4 679 aa14.78□□□□□ -0.04
VPS39-210ENST00000568357 ZNF578Q96N58 590 aaPredicted RBP14.78□□□□□ -0.04
VPS39-210ENST00000568357 ZCCHC2Q9C0B9 1178 aaKnown RBP14.78□□□□□ -0.04
VPS39-210ENST00000568357 STRADBQ9C0K7 418 aa14.78□□□□□ -0.04
VPS39-210ENST00000568357 NLE1Q9NVX2 485 aaPredicted RBP14.78□□□□□ -0.04
VPS39-210ENST00000568357 PAK5Q9P286 719 aa14.78□□□□□ -0.04
VPS39-210ENST00000568357 WDR37Q9Y2I8 494 aa14.78□□□□□ -0.04
VPS39-210ENST00000568357 ARHGEF17Q96PE2 2063 aaPredicted RBP14.78□□□□□ -0.04
VPS39-210ENST00000568357 SCN8AQ9UQD0 1980 aa14.77□□□□□ -0.04
VPS39-210ENST00000568357 PRAMEF33A0A0G2JMD5 474 aa14.77□□□□□ -0.05
VPS39-210ENST00000568357 IGHV5-10-1A0A0J9YXX1 117 aa14.77□□□□□ -0.05
VPS39-210ENST00000568357 CCDC78A2IDD5 438 aa14.77□□□□□ -0.05
VPS39-210ENST00000568357 PDZK1P1A8MUH7 402 aa14.77□□□□□ -0.05
VPS39-210ENST00000568357 E7EVH7 732 aa14.77□□□□□ -0.05
VPS39-210ENST00000568357 H7C0S8 307 aa14.77□□□□□ -0.05
VPS39-210ENST00000568357 PLD2O14939 933 aa14.77□□□□□ -0.05
VPS39-210ENST00000568357 SGTAO43765 313 aa14.77□□□□□ -0.05
VPS39-210ENST00000568357 TNFSF15O95150 251 aa14.77□□□□□ -0.05
VPS39-210ENST00000568357 PRSS56P0CW18 603 aa14.77□□□□□ -0.05
VPS39-210ENST00000568357 SLC2A4P14672 509 aa14.77□□□□□ -0.05
VPS39-210ENST00000568357 IDSP22304 550 aa14.77□□□□□ -0.05
VPS39-210ENST00000568357 MPSTP25325 297 aa14.77□□□□□ -0.05
VPS39-210ENST00000568357 PSMA3P25788 255 aa14.77□□□□□ -0.05
VPS39-210ENST00000568357 RBMS1P29558 406 aaKnown RBP14.77□□□□□ -0.05
VPS39-210ENST00000568357 AKT1P31749 480 aa14.77□□□□□ -0.05
VPS39-210ENST00000568357 MC4RP32245 332 aa14.77□□□□□ -0.05
VPS39-210ENST00000568357 CSF2RBP32927 897 aa14.77□□□□□ -0.05
VPS39-210ENST00000568357 SLC19A1P41440 591 aa14.77□□□□□ -0.05
VPS39-210ENST00000568357 LMAN1P49257 510 aa14.77□□□□□ -0.05
VPS39-210ENST00000568357 ERVPABLB-1P60509 514 aa14.77□□□□□ -0.05
VPS39-210ENST00000568357 CDH17Q12864 832 aa14.77□□□□□ -0.05
VPS39-210ENST00000568357 SEPT6Q14141 434 aa14.77□□□□□ -0.05
VPS39-210ENST00000568357 CLCA4Q14CN2 919 aa14.77□□□□□ -0.05
VPS39-210ENST00000568357 CLPPQ16740 277 aaPredicted RBP14.77□□□□□ -0.05
VPS39-210ENST00000568357 MAP9Q49MG5 647 aa14.77□□□□□ -0.05
VPS39-210ENST00000568357 PHF19Q5T6S3 580 aa14.77□□□□□ -0.05
VPS39-210ENST00000568357 AGAP9Q5VTM2 703 aa14.77□□□□□ -0.05
VPS39-210ENST00000568357 WASH2PQ6VEQ5 465 aa14.77□□□□□ -0.05
Retrieved 100 of 20,778 RNA–protein pairs in 26 ms