RNA–Protein interactions for RNA: ENST00000564593.1

LINC00560-201, long intergenic non-protein coding RNA 560, humanhuman

TSL 1 (best) BASIC

Gene LINC00560, Length 1,599 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00560-201ENST00000564593 TSPY2A6NKD2 308 aa4.57□□□□□ -1.68
LINC00560-201ENST00000564593 H7C0S8 307 aa4.57□□□□□ -1.68
LINC00560-201ENST00000564593 IPO8O15397 1037 aaKnown RBP4.57□□□□□ -1.68
LINC00560-201ENST00000564593 TBX10O75333 385 aa4.57□□□□□ -1.68
LINC00560-201ENST00000564593 PMS2P2O95744 297 aa4.57□□□□□ -1.68
LINC00560-201ENST00000564593 GGPS1O95749 300 aa4.57□□□□□ -1.68
LINC00560-201ENST00000564593 LINC00271P0C7V0 271 aa4.57□□□□□ -1.68
LINC00560-201ENST00000564593 TSPY3P0CV98 308 aa4.57□□□□□ -1.68
LINC00560-201ENST00000564593 TSPY8P0CW00 308 aa4.57□□□□□ -1.68
LINC00560-201ENST00000564593 MYBL1P10243 752 aa4.57□□□□□ -1.68
LINC00560-201ENST00000564593 FCGR1AP12314 374 aa4.57□□□□□ -1.68
LINC00560-201ENST00000564593 CTSCP53634 463 aa4.57□□□□□ -1.68
LINC00560-201ENST00000564593 BRWD1-AS2P59051 145 aa4.57□□□□□ -1.68
LINC00560-201ENST00000564593 TUBA1BP68363 451 aa4.57□□□□□ -1.68
LINC00560-201ENST00000564593 COG7P83436 770 aa4.57□□□□□ -1.68
LINC00560-201ENST00000564593 TSPY1Q01534 308 aa4.57□□□□□ -1.68
LINC00560-201ENST00000564593 ALCAMQ13740 583 aa4.57□□□□□ -1.68
LINC00560-201ENST00000564593 IL11RAQ14626 422 aa4.57□□□□□ -1.68
LINC00560-201ENST00000564593 PSMD6Q15008 389 aa4.57□□□□□ -1.68
LINC00560-201ENST00000564593 SNAPC1Q16533 368 aa4.57□□□□□ -1.68
LINC00560-201ENST00000564593 CCDC96Q2M329 555 aa4.57□□□□□ -1.68
LINC00560-201ENST00000564593 LETM2Q2VYF4 491 aa4.57□□□□□ -1.68
LINC00560-201ENST00000564593 TCP11X2Q5H9J9 407 aa4.57□□□□□ -1.68
LINC00560-201ENST00000564593 C1orf141Q5JVX7 400 aa4.57□□□□□ -1.68
LINC00560-201ENST00000564593 ADIPOR2Q86V24 386 aa4.57□□□□□ -1.68
LINC00560-201ENST00000564593 CEP57Q86XR8 500 aa4.57□□□□□ -1.68
LINC00560-201ENST00000564593 RNF113BQ8IZP6 322 aaKnown RBP4.57□□□□□ -1.68
LINC00560-201ENST00000564593 ZBTB8BQ8NAP8 495 aaPredicted RBP4.57□□□□□ -1.68
LINC00560-201ENST00000564593 SMRP1Q8NCR6 262 aa4.57□□□□□ -1.68
LINC00560-201ENST00000564593 RBM15BQ8NDT2 890 aaKnown RBP4.57□□□□□ -1.68
LINC00560-201ENST00000564593 SPATA22Q8NHS9 363 aa4.57□□□□□ -1.68
LINC00560-201ENST00000564593 PPP4R1Q8TF05 950 aa4.57□□□□□ -1.68
LINC00560-201ENST00000564593 NEUROG1Q92886 237 aa4.57□□□□□ -1.68
LINC00560-201ENST00000564593 ABTB1Q969K4 478 aaPredicted RBP4.57□□□□□ -1.68
LINC00560-201ENST00000564593 TMEM19Q96HH6 336 aa4.57□□□□□ -1.68
LINC00560-201ENST00000564593 TMEM204Q9BSN7 226 aa4.57□□□□□ -1.68
LINC00560-201ENST00000564593 IL25Q9H293 177 aa4.57□□□□□ -1.68
LINC00560-201ENST00000564593 RCC2Q9P258 522 aaKnown RBP4.57□□□□□ -1.68
LINC00560-201ENST00000564593 WDR35Q9P2L0 1181 aa4.57□□□□□ -1.68
LINC00560-201ENST00000564593 TRBC2A0A5B9 178 aa4.57□□□□□ -1.68
LINC00560-201ENST00000564593 PLK4O00444 970 aa4.57□□□□□ -1.68
LINC00560-201ENST00000564593 PRAMEF11O60813 436 aa4.57□□□□□ -1.68
LINC00560-201ENST00000564593 AFPP02771 609 aaKnown RBP4.57□□□□□ -1.68
LINC00560-201ENST00000564593 ALPLP05186 524 aa4.57□□□□□ -1.68
LINC00560-201ENST00000564593 CPT2P23786 658 aa4.57□□□□□ -1.68
LINC00560-201ENST00000564593 GNL1P36915 607 aaPredicted RBP4.57□□□□□ -1.68
LINC00560-201ENST00000564593 SEC61A1P61619 476 aaKnown RBP4.57□□□□□ -1.68
LINC00560-201ENST00000564593 SNRPEP62304 92 aaKnown RBP4.57□□□□□ -1.68
LINC00560-201ENST00000564593 LTBQ06643 244 aa4.57□□□□□ -1.68
LINC00560-201ENST00000564593 DLG1Q12959 904 aa4.57□□□□□ -1.68
LINC00560-201ENST00000564593 CBWD6Q4V339 395 aa4.57□□□□□ -1.68
LINC00560-201ENST00000564593 CBWD3Q5JTY5 395 aa4.57□□□□□ -1.68
LINC00560-201ENST00000564593 TMEM211Q6ICI0 200 aa4.57□□□□□ -1.68
LINC00560-201ENST00000564593 KRT80Q6KB66 452 aa4.57□□□□□ -1.68
LINC00560-201ENST00000564593 C1orf87Q8N0U7 546 aa4.57□□□□□ -1.68
LINC00560-201ENST00000564593 TSPAN14Q8NG11 270 aa4.57□□□□□ -1.68
LINC00560-201ENST00000564593 TAS1R2Q8TE23 839 aa4.57□□□□□ -1.68
LINC00560-201ENST00000564593 SLC20A1Q8WUM9 679 aa4.57□□□□□ -1.68
LINC00560-201ENST00000564593 SLC38A5Q8WUX1 472 aa4.57□□□□□ -1.68
LINC00560-201ENST00000564593 ZBTB9Q96C00 473 aa4.57□□□□□ -1.68
LINC00560-201ENST00000564593 GOLPH3LQ9H4A5 285 aa4.57□□□□□ -1.68
LINC00560-201ENST00000564593 HAO2Q9NYQ3 351 aa4.57□□□□□ -1.68
LINC00560-201ENST00000564593 TRIP12Q14669 1992 aaPredicted RBP4.56□□□□□ -1.68
LINC00560-201ENST00000564593 A0A0G2JPF8 293 aa4.56□□□□□ -1.68
LINC00560-201ENST00000564593 A0A1W2PP11 408 aa4.56□□□□□ -1.68
LINC00560-201ENST00000564593 LILRA5A6NI73 299 aa4.56□□□□□ -1.68
LINC00560-201ENST00000564593 HNRNPCL3B7ZW38 293 aa4.56□□□□□ -1.68
LINC00560-201ENST00000564593 INO80B-WBP1J3KQ70 363 aa4.56□□□□□ -1.68
LINC00560-201ENST00000564593 CREG1O75629 220 aa4.56□□□□□ -1.68
LINC00560-201ENST00000564593 HNRNPCL4P0DMR1 293 aa4.56□□□□□ -1.68
LINC00560-201ENST00000564593 MYOD1P15172 320 aa4.56□□□□□ -1.68
LINC00560-201ENST00000564593 DNASE1P24855 282 aa4.56□□□□□ -1.68
LINC00560-201ENST00000564593 AMPHP49418 695 aa4.56□□□□□ -1.68
LINC00560-201ENST00000564593 HTR6P50406 440 aa4.56□□□□□ -1.68
LINC00560-201ENST00000564593 CCR3P51677 355 aa4.56□□□□□ -1.68
LINC00560-201ENST00000564593 CDH13P55290 713 aa4.56□□□□□ -1.68
LINC00560-201ENST00000564593 ISL1P61371 349 aa4.56□□□□□ -1.68
LINC00560-201ENST00000564593 SLC20A2Q08357 652 aa4.56□□□□□ -1.68
LINC00560-201ENST00000564593 SF3B4Q15427 424 aaKnown RBP eCLIP4.56□□□□□ -1.68
LINC00560-201ENST00000564593 CRY2Q49AN0 593 aa4.56□□□□□ -1.68
LINC00560-201ENST00000564593 TMEM35AQ53FP2 167 aa4.56□□□□□ -1.68
LINC00560-201ENST00000564593 ZNF628Q5EBL2 1059 aa4.56□□□□□ -1.68
LINC00560-201ENST00000564593 ALS2CLQ60I27 953 aa4.56□□□□□ -1.68
LINC00560-201ENST00000564593 TRNP1Q6NT89 227 aa4.56□□□□□ -1.68
LINC00560-201ENST00000564593 TEX38Q6PEX7 206 aa4.56□□□□□ -1.68
LINC00560-201ENST00000564593 CREB3L2Q70SY1 520 aa4.56□□□□□ -1.68
LINC00560-201ENST00000564593 CAMKMTQ7Z624 323 aa4.56□□□□□ -1.68
LINC00560-201ENST00000564593 ODF3L1Q8IXM7 274 aa4.56□□□□□ -1.68
LINC00560-201ENST00000564593 AFAP1Q8N556 730 aa4.56□□□□□ -1.68
LINC00560-201ENST00000564593 C1orf52Q8N6N3 182 aaKnown RBP4.56□□□□□ -1.68
LINC00560-201ENST00000564593 OR6J1Q8NGC5 347 aa4.56□□□□□ -1.68
LINC00560-201ENST00000564593 CFAP61Q8NHU2 1237 aa4.56□□□□□ -1.68
LINC00560-201ENST00000564593 WDR20Q8TBZ3 569 aa4.56□□□□□ -1.68
LINC00560-201ENST00000564593 TEKT4Q8WW24 435 aa4.56□□□□□ -1.68
LINC00560-201ENST00000564593 SECISBP2LQ93073 1101 aaKnown RBP4.56□□□□□ -1.68
LINC00560-201ENST00000564593 ZNF653Q96CK0 615 aa4.56□□□□□ -1.68
LINC00560-201ENST00000564593 RMDN1Q96DB5 314 aa4.56□□□□□ -1.68
LINC00560-201ENST00000564593 ZMAT2Q96NC0 199 aaKnown RBP4.56□□□□□ -1.68
LINC00560-201ENST00000564593 ZNF385AQ96PM9 386 aaKnown RBP4.56□□□□□ -1.68
LINC00560-201ENST00000564593 NEK1Q96PY6 1258 aa4.56□□□□□ -1.68
Retrieved 100 of 20,778 RNA–protein pairs in 19.6 ms