RNA–Protein interactions for RNA: ENST00000561818.1

VPS39-204, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 537 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-204ENST00000561818 FFAR2O15552 330 aa7.42□□□□□ -1.22
VPS39-204ENST00000561818 DCXO43602 365 aa7.42□□□□□ -1.22
VPS39-204ENST00000561818 TSPAN6O43657 245 aa7.42□□□□□ -1.22
VPS39-204ENST00000561818 ZBTB14O43829 449 aa7.42□□□□□ -1.22
VPS39-204ENST00000561818 LEFTY1O75610 366 aa7.42□□□□□ -1.22
VPS39-204ENST00000561818 CLDN7O95471 211 aa7.42□□□□□ -1.22
VPS39-204ENST00000561818 CBX6O95503 412 aa7.42□□□□□ -1.22
VPS39-204ENST00000561818 ATP6V1G2O95670 118 aa7.42□□□□□ -1.22
VPS39-204ENST00000561818 CATP04040 527 aaKnown RBP7.42□□□□□ -1.22
VPS39-204ENST00000561818 SBK3P0C264 359 aa7.42□□□□□ -1.22
VPS39-204ENST00000561818 CISD3P0C7P0 127 aa7.42□□□□□ -1.22
VPS39-204ENST00000561818 EBLN1P0CF75 366 aa7.42□□□□□ -1.22
VPS39-204ENST00000561818 HNRNPLP14866 589 aaKnown RBP eCLIP7.42□□□□□ -1.22
VPS39-204ENST00000561818 GLULP15104 373 aa7.42□□□□□ -1.22
VPS39-204ENST00000561818 GJA1P17302 382 aa7.42□□□□□ -1.22
VPS39-204ENST00000561818 SYN1P17600 705 aa7.42□□□□□ -1.22
VPS39-204ENST00000561818 LBPP18428 481 aa7.42□□□□□ -1.22
VPS39-204ENST00000561818 MAP4P27816 1152 aaKnown RBP7.42□□□□□ -1.22
VPS39-204ENST00000561818 MAPK1P28482 360 aa7.42□□□□□ -1.22
VPS39-204ENST00000561818 EEF1DP29692 281 aaKnown RBP7.42□□□□□ -1.22
VPS39-204ENST00000561818 IRS1P35568 1242 aa7.42□□□□□ -1.22
VPS39-204ENST00000561818 HSD17B2P37059 387 aa7.42□□□□□ -1.22
VPS39-204ENST00000561818 MMP12P39900 470 aa7.42□□□□□ -1.22
VPS39-204ENST00000561818 MAGEA10P43363 369 aaPredicted RBP7.42□□□□□ -1.22
VPS39-204ENST00000561818 TNFRSF4P43489 277 aa7.42□□□□□ -1.22
VPS39-204ENST00000561818 AP2B1P63010 937 aa7.42□□□□□ -1.22
VPS39-204ENST00000561818 PPARDQ03181 441 aa7.42□□□□□ -1.22
VPS39-204ENST00000561818 DLG1Q12959 904 aa7.42□□□□□ -1.22
VPS39-204ENST00000561818 RPA4Q13156 261 aa7.42□□□□□ -1.22
VPS39-204ENST00000561818 ART3Q13508 389 aa7.42□□□□□ -1.22
VPS39-204ENST00000561818 TUBB3Q13509 450 aa7.42□□□□□ -1.22
VPS39-204ENST00000561818 ZNF460Q14592 562 aa7.42□□□□□ -1.22
VPS39-204ENST00000561818 NAA25Q14CX7 972 aa7.42□□□□□ -1.22
VPS39-204ENST00000561818 RPS6KA2Q15349 733 aa7.42□□□□□ -1.22
VPS39-204ENST00000561818 PFKFB4Q16877 469 aa7.42□□□□□ -1.22
VPS39-204ENST00000561818 MAP7D1Q3KQU3 841 aa7.42□□□□□ -1.22
VPS39-204ENST00000561818 ITPRIPL2Q3MIP1 535 aa7.42□□□□□ -1.22
VPS39-204ENST00000561818 GGTA1PQ4G0N0 100 aa7.42□□□□□ -1.22
VPS39-204ENST00000561818 SYTL3Q4VX76 610 aa7.42□□□□□ -1.22
VPS39-204ENST00000561818 SETMARQ53H47 684 aaPredicted RBP7.42□□□□□ -1.22
VPS39-204ENST00000561818 CTSL3PQ5NE16 218 aa7.42□□□□□ -1.22
VPS39-204ENST00000561818 HENMT1Q5T8I9 393 aaKnown RBP7.42□□□□□ -1.22
VPS39-204ENST00000561818 KANK2Q63ZY3 851 aa7.42□□□□□ -1.22
VPS39-204ENST00000561818 NXNQ6DKJ4 435 aa7.42□□□□□ -1.22
VPS39-204ENST00000561818 SDE2Q6IQ49 451 aa7.42□□□□□ -1.22
VPS39-204ENST00000561818 ANKRD54Q6NXT1 300 aa7.42□□□□□ -1.22
VPS39-204ENST00000561818 ZFP1Q6P2D0 407 aa7.42□□□□□ -1.22
VPS39-204ENST00000561818 FBXL19Q6PCT2 694 aa7.42□□□□□ -1.22
VPS39-204ENST00000561818 SERPINA13PQ6UXR4 307 aa7.42□□□□□ -1.22
VPS39-204ENST00000561818 NAPRTQ6XQN6 538 aa7.42□□□□□ -1.22
VPS39-204ENST00000561818 TTC7BQ86TV6 843 aa7.42□□□□□ -1.22
VPS39-204ENST00000561818 ALYREFQ86V81 257 aaKnown RBP7.42□□□□□ -1.22
VPS39-204ENST00000561818 TMEM126BQ8IUX1 230 aa7.42□□□□□ -1.22
VPS39-204ENST00000561818 SCUBE1Q8IWY4 988 aa7.42□□□□□ -1.22
VPS39-204ENST00000561818 PIANPQ8IYJ0 282 aa7.42□□□□□ -1.22
VPS39-204ENST00000561818 PGAM4Q8N0Y7 254 aa7.42□□□□□ -1.22
VPS39-204ENST00000561818 KYQ8NBH2 561 aa7.42□□□□□ -1.22
VPS39-204ENST00000561818 GOLM1Q8NBJ4 401 aa7.42□□□□□ -1.22
VPS39-204ENST00000561818 FBXO15Q8NCQ5 510 aaPredicted RBP7.42□□□□□ -1.22
VPS39-204ENST00000561818 PPFIBP2Q8ND30 876 aa7.42□□□□□ -1.22
VPS39-204ENST00000561818 ZNF483Q8TF39 744 aaPredicted RBP7.42□□□□□ -1.22
VPS39-204ENST00000561818 ANKRD49Q8WVL7 239 aa7.42□□□□□ -1.22
VPS39-204ENST00000561818 PHF21BQ96EK2 531 aa7.42□□□□□ -1.22
VPS39-204ENST00000561818 RPL10LQ96L21 214 aaKnown RBP7.42□□□□□ -1.22
VPS39-204ENST00000561818 PPP3R2Q96LZ3 170 aa7.42□□□□□ -1.22
VPS39-204ENST00000561818 KLHL32Q96NJ5 620 aa7.42□□□□□ -1.22
VPS39-204ENST00000561818 SPATA16Q9BXB7 569 aa7.42□□□□□ -1.22
VPS39-204ENST00000561818 TRIM15Q9C019 465 aa7.42□□□□□ -1.22
VPS39-204ENST00000561818 RNPEPL1Q9HAU8 725 aa7.42□□□□□ -1.22
VPS39-204ENST00000561818 PARVBQ9HBI1 364 aa7.42□□□□□ -1.22
VPS39-204ENST00000561818 MID1IP1Q9NPA3 183 aa7.42□□□□□ -1.22
VPS39-204ENST00000561818 TRPV5Q9NQA5 729 aa7.42□□□□□ -1.22
VPS39-204ENST00000561818 PNPOQ9NVS9 261 aa7.42□□□□□ -1.22
VPS39-204ENST00000561818 ZNF358Q9NW07 568 aa7.42□□□□□ -1.22
VPS39-204ENST00000561818 GID8Q9NWU2 228 aa7.42□□□□□ -1.22
VPS39-204ENST00000561818 OPTCQ9UBM4 332 aa7.42□□□□□ -1.22
VPS39-204ENST00000561818 B4GALT6Q9UBX8 382 aa7.42□□□□□ -1.22
VPS39-204ENST00000561818 TRPS1Q9UHF7 1281 aa7.42□□□□□ -1.22
VPS39-204ENST00000561818 NDUFAF1Q9Y375 327 aa7.42□□□□□ -1.22
VPS39-204ENST00000561818 TMED5Q9Y3A6 229 aa7.42□□□□□ -1.22
VPS39-204ENST00000561818 KCTD3Q9Y597 815 aa7.42□□□□□ -1.22
VPS39-204ENST00000561818 DNMT3AQ9Y6K1 912 aaPredicted RBP7.42□□□□□ -1.22
VPS39-204ENST00000561818 ALPK3Q96L96 1907 aa7.41□□□□□ -1.22
VPS39-204ENST00000561818 TTC24A2A3L6 582 aaPredicted RBP7.41□□□□□ -1.22
VPS39-204ENST00000561818 PRR5-ARHGAP8B1AHC4 643 aa7.41□□□□□ -1.22
VPS39-204ENST00000561818 K7EPI3 171 aa7.41□□□□□ -1.22
VPS39-204ENST00000561818 SLC28A1O00337 649 aa7.41□□□□□ -1.22
VPS39-204ENST00000561818 GSC2O15499 205 aa7.41□□□□□ -1.22
VPS39-204ENST00000561818 RGS14O43566 566 aa7.41□□□□□ -1.22
VPS39-204ENST00000561818 CCNT2O60583 730 aaKnown RBP7.41□□□□□ -1.22
VPS39-204ENST00000561818 LYPLA1O75608 230 aaPredicted RBP7.41□□□□□ -1.22
VPS39-204ENST00000561818 SLC25A14O95258 325 aaPredicted RBP7.41□□□□□ -1.22
VPS39-204ENST00000561818 MATN4O95460 622 aa7.41□□□□□ -1.22
VPS39-204ENST00000561818 TSPAN12O95859 305 aa7.41□□□□□ -1.22
VPS39-204ENST00000561818 TOP3BO95985 862 aaKnown RBP7.41□□□□□ -1.22
VPS39-204ENST00000561818 KRT6AP02538 564 aa7.41□□□□□ -1.22
VPS39-204ENST00000561818 KRT6BP04259 564 aa7.41□□□□□ -1.22
VPS39-204ENST00000561818 CHRNGP07510 517 aa7.41□□□□□ -1.22
VPS39-204ENST00000561818 ALPIP09923 528 aa7.41□□□□□ -1.22
VPS39-204ENST00000561818 T-ENOLP0DO92 83 aa7.41□□□□□ -1.22
Retrieved 100 of 20,778 RNA–protein pairs in 33.3 ms