RNA–Protein interactions for RNA: ENST00000561505.2

CLN3-208, Transcript of CLN3, battenin, humanhuman

TSL 1 (best)

Gene CLN3, Length 495 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-208ENST00000561505 KMT5CQ86Y97 462 aa16.12■□□□□ 0.17
CLN3-208ENST00000561505 RASGRP3Q8IV61 690 aa16.12■□□□□ 0.17
CLN3-208ENST00000561505 TRIM48Q8IWZ4 208 aa16.12■□□□□ 0.17
CLN3-208ENST00000561505 TEX19Q8NA77 164 aa16.12■□□□□ 0.17
CLN3-208ENST00000561505 CT55Q8WUE5 264 aa16.12■□□□□ 0.17
CLN3-208ENST00000561505 STAMBPL1Q96FJ0 436 aa16.12■□□□□ 0.17
CLN3-208ENST00000561505 GPR87Q9BY21 358 aa16.12■□□□□ 0.17
CLN3-208ENST00000561505 SHOC2Q9UQ13 582 aa16.12■□□□□ 0.17
CLN3-208ENST00000561505 WDR37Q9Y2I8 494 aa16.12■□□□□ 0.17
CLN3-208ENST00000561505 PCDHGA9Q9Y5G4 932 aaKnown RBP16.12■□□□□ 0.17
CLN3-208ENST00000561505 DNMT3AQ9Y6K1 912 aaPredicted RBP16.12■□□□□ 0.17
CLN3-208ENST00000561505 IGHV5-51A0A0C4DH38 117 aa16.11■□□□□ 0.17
CLN3-208ENST00000561505 OR52A4PA6NMU1 304 aa16.11■□□□□ 0.17
CLN3-208ENST00000561505 NDST3O95803 873 aa16.11■□□□□ 0.17
CLN3-208ENST00000561505 SSR1P43307 286 aaKnown RBP16.11■□□□□ 0.17
CLN3-208ENST00000561505 UGT8Q16880 541 aa16.11■□□□□ 0.17
CLN3-208ENST00000561505 ASTE1Q2TB18 679 aaPredicted RBP16.11■□□□□ 0.17
CLN3-208ENST00000561505 ATP13A5Q4VNC0 1218 aa16.11■□□□□ 0.17
CLN3-208ENST00000561505 ALS2CLQ60I27 953 aa16.11■□□□□ 0.17
CLN3-208ENST00000561505 CRTC3Q6UUV7 619 aa16.11■□□□□ 0.17
CLN3-208ENST00000561505 TMEM135Q86UB9 458 aa16.11■□□□□ 0.17
CLN3-208ENST00000561505 ATCAYQ86WG3 371 aa16.11■□□□□ 0.17
CLN3-208ENST00000561505 GALNT11Q8NCW6 608 aa16.11■□□□□ 0.17
CLN3-208ENST00000561505 BRSK1Q8TDC3 778 aa16.11■□□□□ 0.17
CLN3-208ENST00000561505 GPR63Q9BZJ6 419 aa16.11■□□□□ 0.17
CLN3-208ENST00000561505 AKIRIN1Q9H9L7 192 aaPredicted RBP16.11■□□□□ 0.17
CLN3-208ENST00000561505 PDE7BQ9NP56 450 aa16.11■□□□□ 0.17
CLN3-208ENST00000561505 SPO11Q9Y5K1 396 aa16.11■□□□□ 0.17
CLN3-208ENST00000561505 LOC285095A0A1B0GVY8 99 aa16.1■□□□□ 0.17
CLN3-208ENST00000561505 PDZK1P1A8MUH7 402 aa16.1■□□□□ 0.17
CLN3-208ENST00000561505 GOLGA6L22H0YM25 854 aa16.1■□□□□ 0.17
CLN3-208ENST00000561505 AURKAO14965 403 aa16.1■□□□□ 0.17
CLN3-208ENST00000561505 EPOP01588 193 aa16.1■□□□□ 0.17
CLN3-208ENST00000561505 H2AFZP0C0S5 128 aa16.1■□□□□ 0.17
CLN3-208ENST00000561505 PIRTP0C851 137 aa16.1■□□□□ 0.17
CLN3-208ENST00000561505 FOLR1P15328 257 aa16.1■□□□□ 0.17
CLN3-208ENST00000561505 RPL10P27635 214 aaKnown RBP16.1■□□□□ 0.17
CLN3-208ENST00000561505 MLLT10P55197 1068 aa16.1■□□□□ 0.17
CLN3-208ENST00000561505 PDK1Q15118 436 aa16.1■□□□□ 0.17
CLN3-208ENST00000561505 TEX44Q53QW1 395 aa16.1■□□□□ 0.17
CLN3-208ENST00000561505 CAPRIN2Q6IMN6 1127 aaKnown RBP16.1■□□□□ 0.17
CLN3-208ENST00000561505 PWWP2BQ6NUJ5 590 aa16.1■□□□□ 0.17
CLN3-208ENST00000561505 H2AFVQ71UI9 128 aa16.1■□□□□ 0.17
CLN3-208ENST00000561505 D2HGDHQ8N465 521 aa16.1■□□□□ 0.17
CLN3-208ENST00000561505 TTC30BQ8N4P2 665 aa16.1■□□□□ 0.17
CLN3-208ENST00000561505 ZFPM2Q8WW38 1151 aa16.1■□□□□ 0.17
CLN3-208ENST00000561505 THAP4Q8WY91 577 aa16.1■□□□□ 0.17
CLN3-208ENST00000561505 ZNF830Q96NB3 372 aaPredicted RBP16.1■□□□□ 0.17
CLN3-208ENST00000561505 CD180Q99467 661 aa16.1■□□□□ 0.17
CLN3-208ENST00000561505 TRIM55Q9BYV6 548 aa16.1■□□□□ 0.17
CLN3-208ENST00000561505 TWSG1Q9GZX9 223 aa16.1■□□□□ 0.17
CLN3-208ENST00000561505 TRABDQ9H4I3 376 aa16.1■□□□□ 0.17
CLN3-208ENST00000561505 GLOD4Q9HC38 313 aa16.1■□□□□ 0.17
CLN3-208ENST00000561505 IL26Q9NPH9 171 aa16.1■□□□□ 0.17
CLN3-208ENST00000561505 CTTNBP2NLQ9P2B4 639 aa16.1■□□□□ 0.17
CLN3-208ENST00000561505 LNPEPQ9UIQ6 1025 aa16.1■□□□□ 0.17
CLN3-208ENST00000561505 DNAJC16Q9Y2G8 782 aa16.1■□□□□ 0.17
CLN3-208ENST00000561505 SPTBN1Q01082 2364 aaKnown RBP16.1■□□□□ 0.17
CLN3-208ENST00000561505 NBPF19A0A087WUL8 3843 aa16.09■□□□□ 0.17
CLN3-208ENST00000561505 PIPSLA2A3N6 862 aa16.09■□□□□ 0.17
CLN3-208ENST00000561505 BLACEA4D250 179 aa16.09■□□□□ 0.17
CLN3-208ENST00000561505 CDC14CA4D256 554 aa16.09■□□□□ 0.17
CLN3-208ENST00000561505 MTX2O75431 263 aa16.09■□□□□ 0.17
CLN3-208ENST00000561505 KATNA1O75449 491 aa16.09■□□□□ 0.17
CLN3-208ENST00000561505 CEACAM4O75871 244 aa16.09■□□□□ 0.17
CLN3-208ENST00000561505 RASSF9O75901 435 aa16.09■□□□□ 0.17
CLN3-208ENST00000561505 SERPINC1P01008 464 aa16.09■□□□□ 0.17
CLN3-208ENST00000561505 GYPCP04921 128 aa16.09■□□□□ 0.17
CLN3-208ENST00000561505 VCLP18206 1134 aa16.09■□□□□ 0.17
CLN3-208ENST00000561505 PTPN4P29074 926 aa16.09■□□□□ 0.17
CLN3-208ENST00000561505 DRG2P55039 364 aaKnown RBP16.09■□□□□ 0.17
CLN3-208ENST00000561505 PPP1CAP62136 330 aa16.09■□□□□ 0.17
CLN3-208ENST00000561505 FANCCQ00597 558 aa16.09■□□□□ 0.17
CLN3-208ENST00000561505 PLA2G4EQ3MJ16 856 aa16.09■□□□□ 0.17
CLN3-208ENST00000561505 LRRC38Q5VT99 294 aa16.09■□□□□ 0.17
CLN3-208ENST00000561505 FAM92BQ6ZTR7 304 aa16.09■□□□□ 0.17
CLN3-208ENST00000561505 SYVN1Q86TM6 617 aa16.09■□□□□ 0.17
CLN3-208ENST00000561505 CARFQ8N187 725 aa16.09■□□□□ 0.17
CLN3-208ENST00000561505 SPATA22Q8NHS9 363 aa16.09■□□□□ 0.17
CLN3-208ENST00000561505 CXorf40BQ96DE9 158 aa16.09■□□□□ 0.17
CLN3-208ENST00000561505 TEKT5Q96M29 485 aa16.09■□□□□ 0.17
CLN3-208ENST00000561505 ACTL8Q9H568 366 aa16.09■□□□□ 0.17
CLN3-208ENST00000561505 CBX8Q9HC52 389 aa16.09■□□□□ 0.17
CLN3-208ENST00000561505 LATS2Q9NRM7 1088 aa16.09■□□□□ 0.17
CLN3-208ENST00000561505 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP16.09■□□□□ 0.17
CLN3-208ENST00000561505 IL17CQ9P0M4 197 aa16.09■□□□□ 0.17
CLN3-208ENST00000561505 RARRES3Q9UL19 164 aa16.09■□□□□ 0.17
CLN3-208ENST00000561505 LUC7L2Q9Y383 392 aaKnown RBP16.09■□□□□ 0.17
CLN3-208ENST00000561505 SORBS2O94875 1100 aaKnown RBP16.08■□□□□ 0.16
CLN3-208ENST00000561505 MT-CYBP00156 380 aaPredicted RBP16.08■□□□□ 0.16
CLN3-208ENST00000561505 LPOP22079 712 aaPredicted RBP16.08■□□□□ 0.16
CLN3-208ENST00000561505 GJC1P36383 396 aa16.08■□□□□ 0.16
CLN3-208ENST00000561505 ACY1Q03154 408 aa16.08■□□□□ 0.16
CLN3-208ENST00000561505 TUBB3Q13509 450 aa16.08■□□□□ 0.16
CLN3-208ENST00000561505 SEPT7Q16181 437 aaKnown RBP16.08■□□□□ 0.16
CLN3-208ENST00000561505 RPE65Q16518 533 aa16.08■□□□□ 0.16
CLN3-208ENST00000561505 SLC18A3Q16572 532 aa16.08■□□□□ 0.16
CLN3-208ENST00000561505 TAZQ16635 292 aa16.08■□□□□ 0.16
CLN3-208ENST00000561505 ZDHHC20Q5W0Z9 365 aa16.08■□□□□ 0.16
CLN3-208ENST00000561505 METRNLQ641Q3 311 aa16.08■□□□□ 0.16
Retrieved 100 of 20,778 RNA–protein pairs in 26.8 ms