RNA–Protein interactions for RNA: ENST00000557342.5

SLIRP-209, Transcript of SRA stem-loop interacting RNA binding protein, humanhuman

TSL 1 (best) BASIC

Gene SLIRP, Length 408 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SLIRP-209ENST00000557342 Q8N9G6 341 aaPredicted RBP12.29□□□□□ -0.44
SLIRP-209ENST00000557342 SLC37A2Q8TED4 501 aa12.29□□□□□ -0.44
SLIRP-209ENST00000557342 NXPE2Q96DL1 559 aa12.29□□□□□ -0.44
SLIRP-209ENST00000557342 TRIM44Q96DX7 344 aaPredicted RBP12.29□□□□□ -0.44
SLIRP-209ENST00000557342 TMEM74Q96NL1 305 aa12.29□□□□□ -0.44
SLIRP-209ENST00000557342 TTC1Q99614 292 aa12.29□□□□□ -0.44
SLIRP-209ENST00000557342 SLC38A3Q99624 504 aa12.29□□□□□ -0.44
SLIRP-209ENST00000557342 LDHAL6BQ9BYZ2 381 aaPredicted RBP12.29□□□□□ -0.44
SLIRP-209ENST00000557342 FAM96AQ9H5X1 160 aa12.29□□□□□ -0.44
SLIRP-209ENST00000557342 SARS2Q9NP81 518 aaKnown RBP12.29□□□□□ -0.44
SLIRP-209ENST00000557342 WASH6PQ9NQA3 447 aa12.29□□□□□ -0.44
SLIRP-209ENST00000557342 DNAJC16Q9Y2G8 782 aa12.29□□□□□ -0.44
SLIRP-209ENST00000557342 TRBV23OR9-2A0A075B6M9 112 aa12.28□□□□□ -0.44
SLIRP-209ENST00000557342 A0A1W2PQM1 296 aa12.28□□□□□ -0.44
SLIRP-209ENST00000557342 CCDC78A2IDD5 438 aa12.28□□□□□ -0.44
SLIRP-209ENST00000557342 PDZK1P1A8MUH7 402 aa12.28□□□□□ -0.44
SLIRP-209ENST00000557342 PPM1DO15297 605 aa12.28□□□□□ -0.44
SLIRP-209ENST00000557342 EML2O95834 649 aa12.28□□□□□ -0.44
SLIRP-209ENST00000557342 ATP1B2P14415 290 aaPredicted RBP12.28□□□□□ -0.44
SLIRP-209ENST00000557342 XRCC1P18887 633 aaPredicted RBP12.28□□□□□ -0.44
SLIRP-209ENST00000557342 ALDH4A1P30038 563 aa12.28□□□□□ -0.44
SLIRP-209ENST00000557342 PPARGP37231 505 aaPredicted RBP12.28□□□□□ -0.44
SLIRP-209ENST00000557342 HALP42357 657 aa12.28□□□□□ -0.44
SLIRP-209ENST00000557342 PRAMEP78395 509 aa12.28□□□□□ -0.44
SLIRP-209ENST00000557342 GPLD1P80108 840 aa12.28□□□□□ -0.44
SLIRP-209ENST00000557342 HHEXQ03014 270 aa12.28□□□□□ -0.44
SLIRP-209ENST00000557342 ACVR1Q04771 509 aa12.28□□□□□ -0.44
SLIRP-209ENST00000557342 ITIH4Q14624 930 aa12.28□□□□□ -0.44
SLIRP-209ENST00000557342 KCNJ11Q14654 390 aa12.28□□□□□ -0.44
SLIRP-209ENST00000557342 PPP1R7Q15435 360 aa12.28□□□□□ -0.44
SLIRP-209ENST00000557342 FNBP1LQ5T0N5 605 aa12.28□□□□□ -0.44
SLIRP-209ENST00000557342 CHCHD2P9Q5T1J5 151 aaPredicted RBP12.28□□□□□ -0.44
SLIRP-209ENST00000557342 AGAP9Q5VTM2 703 aa12.28□□□□□ -0.44
SLIRP-209ENST00000557342 ABRAXAS1Q6UWZ7 409 aa12.28□□□□□ -0.44
SLIRP-209ENST00000557342 DET1Q7L5Y6 550 aa12.28□□□□□ -0.44
SLIRP-209ENST00000557342 SERPINA9Q86WD7 417 aa12.28□□□□□ -0.44
SLIRP-209ENST00000557342 CREG2Q8IUH2 290 aa12.28□□□□□ -0.44
SLIRP-209ENST00000557342 KDF1Q8NAX2 398 aaPredicted RBP12.28□□□□□ -0.44
SLIRP-209ENST00000557342 MCUQ8NE86 351 aa12.28□□□□□ -0.44
SLIRP-209ENST00000557342 OR13J1Q8NGT2 312 aa12.28□□□□□ -0.44
SLIRP-209ENST00000557342 HDAC10Q969S8 669 aa12.28□□□□□ -0.44
SLIRP-209ENST00000557342 SGF29Q96ES7 293 aa12.28□□□□□ -0.44
SLIRP-209ENST00000557342 SGSM3Q96HU1 749 aa12.28□□□□□ -0.44
SLIRP-209ENST00000557342 CAPZA3Q96KX2 299 aa12.28□□□□□ -0.44
SLIRP-209ENST00000557342 LINC00615Q96LM1 132 aaPredicted RBP12.28□□□□□ -0.44
SLIRP-209ENST00000557342 DPYSL5Q9BPU6 564 aa12.28□□□□□ -0.44
SLIRP-209ENST00000557342 CCDC86Q9H6F5 360 aaKnown RBP12.28□□□□□ -0.44
SLIRP-209ENST00000557342 VPS37BQ9H9H4 285 aa12.28□□□□□ -0.44
SLIRP-209ENST00000557342 MRM3Q9HC36 420 aaKnown RBP12.28□□□□□ -0.44
SLIRP-209ENST00000557342 PRDM8Q9NQV8 689 aa12.28□□□□□ -0.44
SLIRP-209ENST00000557342 DKK4Q9UBT3 224 aa12.28□□□□□ -0.44
SLIRP-209ENST00000557342 PCYOX1Q9UHG3 505 aa12.28□□□□□ -0.44
SLIRP-209ENST00000557342 NEU2Q9Y3R4 380 aa12.28□□□□□ -0.44
SLIRP-209ENST00000557342 IGLV3-16A0A075B6K0 115 aa12.27□□□□□ -0.45
SLIRP-209ENST00000557342 TCRBV7S3A2A0A539 114 aa12.27□□□□□ -0.45
SLIRP-209ENST00000557342 CCDC162PA2VCL2 907 aa12.27□□□□□ -0.45
SLIRP-209ENST00000557342 MGAT4DA6NG13 374 aa12.27□□□□□ -0.45
SLIRP-209ENST00000557342 PRR19A6NJB7 356 aa12.27□□□□□ -0.45
SLIRP-209ENST00000557342 D6RAR5 112 aa12.27□□□□□ -0.45
SLIRP-209ENST00000557342 F8W8V4 182 aa12.27□□□□□ -0.45
SLIRP-209ENST00000557342 CCDC188H7C350 402 aa12.27□□□□□ -0.45
SLIRP-209ENST00000557342 QSOX1O00391 747 aa12.27□□□□□ -0.45
SLIRP-209ENST00000557342 B4GAT1O43505 415 aa12.27□□□□□ -0.45
SLIRP-209ENST00000557342 AP2A2O94973 939 aa12.27□□□□□ -0.45
SLIRP-209ENST00000557342 CPNE6O95741 557 aa12.27□□□□□ -0.45
SLIRP-209ENST00000557342 GOT2P00505 430 aaKnown RBP12.27□□□□□ -0.45
SLIRP-209ENST00000557342 VIPP01282 170 aa12.27□□□□□ -0.45
SLIRP-209ENST00000557342 GSTM1P09488 218 aa12.27□□□□□ -0.45
SLIRP-209ENST00000557342 MLNP12872 115 aa12.27□□□□□ -0.45
SLIRP-209ENST00000557342 CASQ1P31415 396 aa12.27□□□□□ -0.45
SLIRP-209ENST00000557342 FOXN2P32314 431 aa12.27□□□□□ -0.45
SLIRP-209ENST00000557342 NSG1P42857 185 aa12.27□□□□□ -0.45
SLIRP-209ENST00000557342 PRLHRP49683 370 aa12.27□□□□□ -0.45
SLIRP-209ENST00000557342 CDKN1CP49918 316 aaPredicted RBP12.27□□□□□ -0.45
SLIRP-209ENST00000557342 ARSDP51689 593 aa12.27□□□□□ -0.45
SLIRP-209ENST00000557342 INHBCP55103 352 aa12.27□□□□□ -0.45
SLIRP-209ENST00000557342 OR1D5P58170 312 aa12.27□□□□□ -0.45
SLIRP-209ENST00000557342 GSTM4Q03013 218 aa12.27□□□□□ -0.45
SLIRP-209ENST00000557342 RTP5Q14D33 572 aa12.27□□□□□ -0.45
SLIRP-209ENST00000557342 SEPT7Q16181 437 aaKnown RBP12.27□□□□□ -0.45
SLIRP-209ENST00000557342 MAP9Q49MG5 647 aa12.27□□□□□ -0.45
SLIRP-209ENST00000557342 FASTKD1Q53R41 847 aaKnown RBP12.27□□□□□ -0.45
SLIRP-209ENST00000557342 CERS6Q6ZMG9 384 aa12.27□□□□□ -0.45
SLIRP-209ENST00000557342 SYDE1Q6ZW31 735 aaPredicted RBP12.27□□□□□ -0.45
SLIRP-209ENST00000557342 PCGF5Q86SE9 256 aa12.27□□□□□ -0.45
SLIRP-209ENST00000557342 PIM3Q86V86 326 aa12.27□□□□□ -0.45
SLIRP-209ENST00000557342 TRIM48Q8IWZ4 208 aa12.27□□□□□ -0.45
SLIRP-209ENST00000557342 BEND7Q8N7W2 519 aaPredicted RBP12.27□□□□□ -0.45
SLIRP-209ENST00000557342 OR6P1Q8NGX9 317 aa12.27□□□□□ -0.45
SLIRP-209ENST00000557342 OR2L2Q8NH16 312 aa12.27□□□□□ -0.45
SLIRP-209ENST00000557342 OR4L1Q8NH43 312 aa12.27□□□□□ -0.45
SLIRP-209ENST00000557342 OR10G6Q8NH81 332 aa12.27□□□□□ -0.45
SLIRP-209ENST00000557342 ZCCHC14Q8WYQ9 949 aaKnown RBP12.27□□□□□ -0.45
SLIRP-209ENST00000557342 CPT1BQ92523 772 aa12.27□□□□□ -0.45
SLIRP-209ENST00000557342 SLCO2A1Q92959 643 aa12.27□□□□□ -0.45
SLIRP-209ENST00000557342 AHCYL2Q96HN2 611 aaKnown RBP12.27□□□□□ -0.45
SLIRP-209ENST00000557342 STRADBQ9C0K7 418 aa12.27□□□□□ -0.45
SLIRP-209ENST00000557342 DDX47Q9H0S4 455 aaKnown RBP12.27□□□□□ -0.45
SLIRP-209ENST00000557342 UCK1Q9HA47 277 aa12.27□□□□□ -0.45
SLIRP-209ENST00000557342 XAB2Q9HCS7 855 aaKnown RBP12.27□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 35.7 ms