RNA–Protein interactions for RNA: ENST00000557302.1

SHMT2-228, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 3

Gene SHMT2, Length 457 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-228ENST00000557302 NAGSQ8N159 534 aa13.38□□□□□ -0.27
SHMT2-228ENST00000557302 MPP5Q8N3R9 675 aa13.38□□□□□ -0.27
SHMT2-228ENST00000557302 CHCHD4Q8N4Q1 142 aa13.38□□□□□ -0.27
SHMT2-228ENST00000557302 SNF8Q96H20 258 aa13.38□□□□□ -0.27
SHMT2-228ENST00000557302 TTC1Q99614 292 aa13.38□□□□□ -0.27
SHMT2-228ENST00000557302 TRIM31Q9BZY9 425 aa13.38□□□□□ -0.27
SHMT2-228ENST00000557302 TBC1D29Q9UFV1 150 aa13.38□□□□□ -0.27
SHMT2-228ENST00000557302 SLC23A2Q9UGH3 650 aa13.38□□□□□ -0.27
SHMT2-228ENST00000557302 DNMT3AQ9Y6K1 912 aaPredicted RBP13.38□□□□□ -0.27
SHMT2-228ENST00000557302 SPEGQ15772 3267 aa13.37□□□□□ -0.27
SHMT2-228ENST00000557302 PDZK1P1A8MUH7 402 aa13.37□□□□□ -0.27
SHMT2-228ENST00000557302 NDC80O14777 642 aa13.37□□□□□ -0.27
SHMT2-228ENST00000557302 NUDT21O43809 227 aaKnown RBP13.37□□□□□ -0.27
SHMT2-228ENST00000557302 HYAL3O43820 417 aaPredicted RBP13.37□□□□□ -0.27
SHMT2-228ENST00000557302 POP7O75817 140 aaKnown RBP13.37□□□□□ -0.27
SHMT2-228ENST00000557302 F3P13726 295 aa13.37□□□□□ -0.27
SHMT2-228ENST00000557302 ATP1B2P14415 290 aaPredicted RBP13.37□□□□□ -0.27
SHMT2-228ENST00000557302 GLB1P16278 677 aa13.37□□□□□ -0.27
SHMT2-228ENST00000557302 PPARGP37231 505 aaPredicted RBP13.37□□□□□ -0.27
SHMT2-228ENST00000557302 MAZP56270 477 aaKnown RBP13.37□□□□□ -0.27
SHMT2-228ENST00000557302 DNAJC21Q5F1R6 531 aaKnown RBP13.37□□□□□ -0.27
SHMT2-228ENST00000557302 AARS2Q5JTZ9 985 aaKnown RBP13.37□□□□□ -0.27
SHMT2-228ENST00000557302 PERM1Q5SV97 790 aa13.37□□□□□ -0.27
SHMT2-228ENST00000557302 LYPLAL1Q5VWZ2 237 aa13.37□□□□□ -0.27
SHMT2-228ENST00000557302 CES3Q6UWW8 571 aa13.37□□□□□ -0.27
SHMT2-228ENST00000557302 CERS6Q6ZMG9 384 aa13.37□□□□□ -0.27
SHMT2-228ENST00000557302 C17orf82Q86X59 251 aaPredicted RBP13.37□□□□□ -0.27
SHMT2-228ENST00000557302 ARL14Q8N4G2 192 aa13.37□□□□□ -0.27
SHMT2-228ENST00000557302 MAPK15Q8TD08 544 aa13.37□□□□□ -0.27
SHMT2-228ENST00000557302 PATE1Q8WXA2 126 aa13.37□□□□□ -0.27
SHMT2-228ENST00000557302 CCDC74AQ96AQ1 378 aa13.37□□□□□ -0.27
SHMT2-228ENST00000557302 MFSD3Q96ES6 412 aa13.37□□□□□ -0.27
SHMT2-228ENST00000557302 CCDC97Q96F63 343 aaPredicted RBP13.37□□□□□ -0.27
SHMT2-228ENST00000557302 SGSM3Q96HU1 749 aa13.37□□□□□ -0.27
SHMT2-228ENST00000557302 ABCG4Q9H172 646 aa13.37□□□□□ -0.27
SHMT2-228ENST00000557302 PRDM8Q9NQV8 689 aa13.37□□□□□ -0.27
SHMT2-228ENST00000557302 CATSPERZQ9NTU4 200 aa13.37□□□□□ -0.27
SHMT2-228ENST00000557302 ANAPC5Q9UJX4 755 aa13.37□□□□□ -0.27
SHMT2-228ENST00000557302 MAD1L1Q9Y6D9 718 aa13.37□□□□□ -0.27
SHMT2-228ENST00000557302 RNF215Q9Y6U7 377 aa13.37□□□□□ -0.27
SHMT2-228ENST00000557302 CEP295Q9C0D2 2601 aa13.37□□□□□ -0.27
SHMT2-228ENST00000557302 FAM237BA0A1B0GVD1 139 aa13.36□□□□□ -0.27
SHMT2-228ENST00000557302 KLHL33A6NCF5 533 aa13.36□□□□□ -0.27
SHMT2-228ENST00000557302 A6NCN8 305 aa13.36□□□□□ -0.27
SHMT2-228ENST00000557302 PRR19A6NJB7 356 aa13.36□□□□□ -0.27
SHMT2-228ENST00000557302 OR5K4A6NMS3 321 aa13.36□□□□□ -0.27
SHMT2-228ENST00000557302 CD3EAPO15446 510 aaKnown RBP13.36□□□□□ -0.27
SHMT2-228ENST00000557302 RAD51CO43502 376 aa13.36□□□□□ -0.27
SHMT2-228ENST00000557302 OPA1O60313 960 aa13.36□□□□□ -0.27
SHMT2-228ENST00000557302 AP2A2O94973 939 aa13.36□□□□□ -0.27
SHMT2-228ENST00000557302 SEC31AO94979 1220 aaKnown RBP13.36□□□□□ -0.27
SHMT2-228ENST00000557302 VAPBO95292 243 aa13.36□□□□□ -0.27
SHMT2-228ENST00000557302 EML2O95834 649 aa13.36□□□□□ -0.27
SHMT2-228ENST00000557302 PAMP19021 973 aa13.36□□□□□ -0.27
SHMT2-228ENST00000557302 IDSP22304 550 aa13.36□□□□□ -0.27
SHMT2-228ENST00000557302 PBLDP30039 288 aaPredicted RBP13.36□□□□□ -0.27
SHMT2-228ENST00000557302 NSG1P42857 185 aa13.36□□□□□ -0.27
SHMT2-228ENST00000557302 PRLHRP49683 370 aa13.36□□□□□ -0.27
SHMT2-228ENST00000557302 ITGA8P53708 1063 aa13.36□□□□□ -0.27
SHMT2-228ENST00000557302 MRPS25P82663 173 aaKnown RBP13.36□□□□□ -0.27
SHMT2-228ENST00000557302 DMPKQ09013 629 aa13.36□□□□□ -0.27
SHMT2-228ENST00000557302 TUBB2AQ13885 445 aa13.36□□□□□ -0.27
SHMT2-228ENST00000557302 SMAD1Q15797 465 aaKnown RBP13.36□□□□□ -0.27
SHMT2-228ENST00000557302 HES3Q5TGS1 186 aa13.36□□□□□ -0.27
SHMT2-228ENST00000557302 KIAA0930Q6ICG6 404 aaPredicted RBP13.36□□□□□ -0.27
SHMT2-228ENST00000557302 HIBCHQ6NVY1 386 aaPredicted RBP13.36□□□□□ -0.27
SHMT2-228ENST00000557302 IYDQ6PHW0 289 aa13.36□□□□□ -0.27
SHMT2-228ENST00000557302 PACS1Q6VY07 963 aa13.36□□□□□ -0.27
SHMT2-228ENST00000557302 GALNT15Q8N3T1 639 aa13.36□□□□□ -0.27
SHMT2-228ENST00000557302 SFRP1Q8N474 314 aa13.36□□□□□ -0.27
SHMT2-228ENST00000557302 OTUD6BQ8N6M0 293 aa13.36□□□□□ -0.27
SHMT2-228ENST00000557302 BEND7Q8N7W2 519 aaPredicted RBP13.36□□□□□ -0.27
SHMT2-228ENST00000557302 KIF18AQ8NI77 898 aa13.36□□□□□ -0.27
SHMT2-228ENST00000557302 SLC37A2Q8TED4 501 aa13.36□□□□□ -0.27
SHMT2-228ENST00000557302 NAT14Q8WUY8 206 aa13.36□□□□□ -0.27
SHMT2-228ENST00000557302 ZNF669Q96BR6 464 aaPredicted RBP13.36□□□□□ -0.27
SHMT2-228ENST00000557302 SIGLEC10Q96LC7 697 aa13.36□□□□□ -0.27
SHMT2-228ENST00000557302 CCDC3Q9BQI4 270 aa13.36□□□□□ -0.27
SHMT2-228ENST00000557302 ERP44Q9BS26 406 aa13.36□□□□□ -0.27
SHMT2-228ENST00000557302 TUBB2BQ9BVA1 445 aa13.36□□□□□ -0.27
SHMT2-228ENST00000557302 VPS37BQ9H9H4 285 aa13.36□□□□□ -0.27
SHMT2-228ENST00000557302 LRIT1Q9P2V4 623 aa13.36□□□□□ -0.27
SHMT2-228ENST00000557302 SNX24Q9Y343 169 aa13.36□□□□□ -0.27
SHMT2-228ENST00000557302 ARHGEF17Q96PE2 2063 aaPredicted RBP13.36□□□□□ -0.27
SHMT2-228ENST00000557302 EPG5Q9HCE0 2579 aa13.35□□□□□ -0.27
SHMT2-228ENST00000557302 PLXNB3Q9ULL4 1909 aa13.35□□□□□ -0.27
SHMT2-228ENST00000557302 ASXL3Q9C0F0 2248 aa13.35□□□□□ -0.27
SHMT2-228ENST00000557302 TRBV23OR9-2A0A075B6M9 112 aa13.35□□□□□ -0.27
SHMT2-228ENST00000557302 KIR2DS5A0A0G2JLQ3 304 aa13.35□□□□□ -0.27
SHMT2-228ENST00000557302 A0A0G2JNG1 304 aa13.35□□□□□ -0.27
SHMT2-228ENST00000557302 MGAT4DA6NG13 374 aa13.35□□□□□ -0.27
SHMT2-228ENST00000557302 RHPN2P1A8MT19 583 aa13.35□□□□□ -0.27
SHMT2-228ENST00000557302 KIR2DS3K7RE56 304 aa13.35□□□□□ -0.27
SHMT2-228ENST00000557302 QSOX1O00391 747 aa13.35□□□□□ -0.27
SHMT2-228ENST00000557302 SGTAO43765 313 aa13.35□□□□□ -0.27
SHMT2-228ENST00000557302 TOP3BO95985 862 aaKnown RBP13.35□□□□□ -0.27
SHMT2-228ENST00000557302 PNLIPP16233 465 aa13.35□□□□□ -0.27
SHMT2-228ENST00000557302 RPL21P46778 160 aaKnown RBP13.35□□□□□ -0.27
SHMT2-228ENST00000557302 TTPAP49638 278 aa13.35□□□□□ -0.27
SHMT2-228ENST00000557302 SHC2P98077 582 aa13.35□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 26.3 ms