RNA–Protein interactions for RNA: ENST00000557005.1

SYNE2-223, Transcript of spectrin repeat containing nuclear envelope protein 2, human

TSL 2

Gene SYNE2, Length 5,804 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SYNE2-223	ENST00000557005	ZDHHC6	Q9H6R6	413 aa		4.94	□□□□□ -1.62
SYNE2-223	ENST00000557005	KRCC1	Q9NPI7	259 aa	Predicted RBP	4.94	□□□□□ -1.62
SYNE2-223	ENST00000557005	CCDC177	Q9NQR7	707 aa	Predicted RBP	4.94	□□□□□ -1.62
SYNE2-223	ENST00000557005	POLR3B	Q9NW08	1133 aa	Predicted RBP	4.94	□□□□□ -1.62
SYNE2-223	ENST00000557005	SLC25A13	Q9UJS0	675 aa		4.94	□□□□□ -1.62
SYNE2-223	ENST00000557005	CDV3	Q9UKY7	258 aa	Known RBP	4.94	□□□□□ -1.62
SYNE2-223	ENST00000557005	NUMBL	Q9Y6R0	609 aa		4.94	□□□□□ -1.62
SYNE2-223	ENST00000557005	IFRD1	O00458	451 aa	Predicted RBP	4.94	□□□□□ -1.62
SYNE2-223	ENST00000557005	GRIN3B	O60391	1043 aa		4.94	□□□□□ -1.62
SYNE2-223	ENST00000557005	ECI2	O75521	394 aa		4.94	□□□□□ -1.62
SYNE2-223	ENST00000557005	SEMA3D	O95025	777 aa		4.94	□□□□□ -1.62
SYNE2-223	ENST00000557005	OTC	P00480	354 aa		4.94	□□□□□ -1.62
SYNE2-223	ENST00000557005	IFNA14	P01570	189 aa		4.94	□□□□□ -1.62
SYNE2-223	ENST00000557005	SMIM18	P0DKX4	95 aa		4.94	□□□□□ -1.62
SYNE2-223	ENST00000557005	ZBTB48	P10074	688 aa	Predicted RBP	4.94	□□□□□ -1.62
SYNE2-223	ENST00000557005	CCNC	P24863	283 aa		4.94	□□□□□ -1.62
SYNE2-223	ENST00000557005	HNRNPD	Q14103	355 aa	Known RBP	4.94	□□□□□ -1.62
SYNE2-223	ENST00000557005	ANGPT1	Q15389	498 aa		4.94	□□□□□ -1.62
SYNE2-223	ENST00000557005	PLA2G4E	Q3MJ16	856 aa		4.94	□□□□□ -1.62
SYNE2-223	ENST00000557005	ZNF280D	Q6N043	979 aa		4.94	□□□□□ -1.62
SYNE2-223	ENST00000557005	DPY19L2P1	Q6NXN4	242 aa		4.94	□□□□□ -1.62
SYNE2-223	ENST00000557005	ENPP6	Q6UWR7	440 aa		4.94	□□□□□ -1.62
SYNE2-223	ENST00000557005	ZC3HC1	Q86WB0	502 aa	Known RBP	4.94	□□□□□ -1.62
SYNE2-223	ENST00000557005	TOP6BL	Q8N6T0	577 aa		4.94	□□□□□ -1.62
SYNE2-223	ENST00000557005	FBXL18	Q96ME1	805 aa		4.94	□□□□□ -1.62
SYNE2-223	ENST00000557005	SEZ6L	Q9BYH1	1024 aa		4.94	□□□□□ -1.62
SYNE2-223	ENST00000557005	IRF2BPL	Q9H1B7	796 aa		4.94	□□□□□ -1.62
SYNE2-223	ENST00000557005	FBRSL1	Q9HCM7	1045 aa	Known RBP	4.94	□□□□□ -1.62
SYNE2-223	ENST00000557005	DKK3	Q9UBP4	350 aa		4.94	□□□□□ -1.62
SYNE2-223	ENST00000557005	PCDHB8	Q9UN66	801 aa		4.94	□□□□□ -1.62
SYNE2-223	ENST00000557005	SNX6	Q9UNH7	406 aa		4.94	□□□□□ -1.62
SYNE2-223	ENST00000557005	SLC27A5	Q9Y2P5	690 aa		4.94	□□□□□ -1.62
SYNE2-223	ENST00000557005	TESMIN	Q9Y4I5	508 aa		4.94	□□□□□ -1.62
SYNE2-223	ENST00000557005		A0A1W2PQ72	361 aa		4.93	□□□□□ -1.62
SYNE2-223	ENST00000557005	FAM234B	A2RU67	622 aa		4.93	□□□□□ -1.62
SYNE2-223	ENST00000557005	PCP4L1	A6NKN8	68 aa		4.93	□□□□□ -1.62
SYNE2-223	ENST00000557005	FAM72C	H0Y354	149 aa		4.93	□□□□□ -1.62
SYNE2-223	ENST00000557005	TNFRSF11B	O00300	401 aa		4.93	□□□□□ -1.62
SYNE2-223	ENST00000557005	ABCB7	O75027	752 aa		4.93	□□□□□ -1.62
SYNE2-223	ENST00000557005	KHDRBS3	O75525	346 aa	Known RBP	4.93	□□□□□ -1.62
SYNE2-223	ENST00000557005	ATE1	O95260	518 aa		4.93	□□□□□ -1.62
SYNE2-223	ENST00000557005	CYBB	P04839	570 aa		4.93	□□□□□ -1.62
SYNE2-223	ENST00000557005	MYF6	P23409	242 aa		4.93	□□□□□ -1.62
SYNE2-223	ENST00000557005	PHKG1	Q16816	387 aa		4.93	□□□□□ -1.62
SYNE2-223	ENST00000557005	XKR6	Q5GH73	641 aa		4.93	□□□□□ -1.62
SYNE2-223	ENST00000557005	SIRPB2	Q5JXA9	342 aa		4.93	□□□□□ -1.62
SYNE2-223	ENST00000557005	FAM72A	Q5TYM5	149 aa		4.93	□□□□□ -1.62
SYNE2-223	ENST00000557005	FAM72D	Q6L9T8	149 aa		4.93	□□□□□ -1.62
SYNE2-223	ENST00000557005	FGD2	Q7Z6J4	655 aa		4.93	□□□□□ -1.62
SYNE2-223	ENST00000557005	FAM72B	Q86X60	149 aa		4.93	□□□□□ -1.62
SYNE2-223	ENST00000557005	SLC34A3	Q8N130	599 aa		4.93	□□□□□ -1.62
SYNE2-223	ENST00000557005	ZBTB2	Q8N680	514 aa		4.93	□□□□□ -1.62
SYNE2-223	ENST00000557005	PACRGL	Q8N7B6	248 aa		4.93	□□□□□ -1.62
SYNE2-223	ENST00000557005	SCAI	Q8N9R8	606 aa		4.93	□□□□□ -1.62
SYNE2-223	ENST00000557005	CMAS	Q8NFW8	434 aa	Predicted RBP	4.93	□□□□□ -1.62
SYNE2-223	ENST00000557005	OR6K2	Q8NGY2	324 aa		4.93	□□□□□ -1.62
SYNE2-223	ENST00000557005	FCRL2	Q96LA5	508 aa	Predicted RBP	4.93	□□□□□ -1.62
SYNE2-223	ENST00000557005	MUS81	Q96NY9	551 aa		4.93	□□□□□ -1.62
SYNE2-223	ENST00000557005	NSUN5	Q96P11	429 aa	Known RBP	4.93	□□□□□ -1.62
SYNE2-223	ENST00000557005	PANX1	Q96RD7	426 aa		4.93	□□□□□ -1.62
SYNE2-223	ENST00000557005	GFM1	Q96RP9	751 aa	Known RBP	4.93	□□□□□ -1.62
SYNE2-223	ENST00000557005	COPS4	Q9BT78	406 aa		4.93	□□□□□ -1.62
SYNE2-223	ENST00000557005	CLEC4M	Q9H2X3	399 aa	Predicted RBP	4.93	□□□□□ -1.62
SYNE2-223	ENST00000557005	ADAMTS10	Q9H324	1103 aa		4.93	□□□□□ -1.62
SYNE2-223	ENST00000557005	MIEF1	Q9NQG6	463 aa		4.93	□□□□□ -1.62
SYNE2-223	ENST00000557005	RCOR3	Q9P2K3	495 aa	Predicted RBP	4.93	□□□□□ -1.62
SYNE2-223	ENST00000557005	DNAJB9	Q9UBS3	223 aa		4.93	□□□□□ -1.62
SYNE2-223	ENST00000557005	SAMD4A	Q9UPU9	718 aa	Known RBP	4.93	□□□□□ -1.62
SYNE2-223	ENST00000557005	ERVK-11	Q9UQG0	969 aa		4.93	□□□□□ -1.62
SYNE2-223	ENST00000557005	SLC9A8	Q9Y2E8	581 aa		4.93	□□□□□ -1.62
SYNE2-223	ENST00000557005	KCTD3	Q9Y597	815 aa		4.93	□□□□□ -1.62
SYNE2-223	ENST00000557005	NHS	Q6T4R5	1651 aa		4.93	□□□□□ -1.62
SYNE2-223	ENST00000557005	CCL15-CCL14	A0A0B4J2E2	113 aa		4.93	□□□□□ -1.62
SYNE2-223	ENST00000557005	TMCC2	O75069	709 aa		4.93	□□□□□ -1.62
SYNE2-223	ENST00000557005	RSL1D1	O76021	490 aa	Known RBP	4.93	□□□□□ -1.62
SYNE2-223	ENST00000557005	INMT	O95050	263 aa		4.93	□□□□□ -1.62
SYNE2-223	ENST00000557005	EIF2S1	P05198	315 aa	Known RBP	4.93	□□□□□ -1.62
SYNE2-223	ENST00000557005	TCEA1	P23193	301 aa	Known RBP	4.93	□□□□□ -1.62
SYNE2-223	ENST00000557005	DNAJB2	P25686	324 aa		4.93	□□□□□ -1.62
SYNE2-223	ENST00000557005	ETV4	P43268	484 aa		4.93	□□□□□ -1.62
SYNE2-223	ENST00000557005	AIF1	P55008	147 aa		4.93	□□□□□ -1.62
SYNE2-223	ENST00000557005	SKIV2L	Q15477	1246 aa	Known RBP	4.93	□□□□□ -1.62
SYNE2-223	ENST00000557005	CCL15	Q16663	113 aa		4.93	□□□□□ -1.62
SYNE2-223	ENST00000557005	ANKDD1A	Q495B1	522 aa		4.93	□□□□□ -1.62
SYNE2-223	ENST00000557005	LCN1P1	Q5VSP4	162 aa		4.93	□□□□□ -1.62
SYNE2-223	ENST00000557005	ZNF772	Q68DY9	489 aa	Predicted RBP	4.93	□□□□□ -1.62
SYNE2-223	ENST00000557005	CXorf57	Q6NSI4	855 aa	Known RBP	4.93	□□□□□ -1.62
SYNE2-223	ENST00000557005	NEK10	Q6ZWH5	1172 aa		4.93	□□□□□ -1.62
SYNE2-223	ENST00000557005	CMTR2	Q8IYT2	770 aa	Known RBP	4.93	□□□□□ -1.62
SYNE2-223	ENST00000557005	ARFGAP1	Q8N6T3	406 aa		4.93	□□□□□ -1.62
SYNE2-223	ENST00000557005	AMER2	Q8N7J2	671 aa		4.93	□□□□□ -1.62
SYNE2-223	ENST00000557005	LRCH3	Q96II8	777 aa		4.93	□□□□□ -1.62
SYNE2-223	ENST00000557005	HSFY1	Q96LI6	401 aa		4.93	□□□□□ -1.62
SYNE2-223	ENST00000557005	ZNF641	Q96N77	438 aa	Predicted RBP	4.93	□□□□□ -1.62
SYNE2-223	ENST00000557005	TCF25	Q9BQ70	676 aa		4.93	□□□□□ -1.62
SYNE2-223	ENST00000557005	LRTM1	Q9HBL6	345 aa		4.93	□□□□□ -1.62
SYNE2-223	ENST00000557005	DYRK4	Q9NR20	520 aa		4.93	□□□□□ -1.62
SYNE2-223	ENST00000557005	SNTG1	Q9NSN8	517 aa		4.93	□□□□□ -1.62
SYNE2-223	ENST00000557005	C14orf119	Q9NWQ9	140 aa		4.93	□□□□□ -1.62
SYNE2-223	ENST00000557005	CDKN2AIP	Q9NXV6	580 aa	Predicted RBP	4.93	□□□□□ -1.62

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