RNA–Protein interactions for RNA: ENST00000556412.4

VIPAS39-208, Transcript of VPS33B interacting protein, apical-basolateral polarity regulator, spe-39 homolog, humanhuman

TSL 2 BASIC

Gene VIPAS39, Length 1,832 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIPAS39-208ENST00000556412 CCL4L1Q8NHW4 92 aa13.85□□□□□ -0.19
VIPAS39-208ENST00000556412 UBLCP1Q8WVY7 318 aaPredicted RBP13.85□□□□□ -0.19
VIPAS39-208ENST00000556412 ATXN7L3BQ96GX2 97 aa13.85□□□□□ -0.19
VIPAS39-208ENST00000556412 TCF12Q99081 682 aa13.85□□□□□ -0.19
VIPAS39-208ENST00000556412 LRRC61Q9BV99 259 aa13.85□□□□□ -0.19
VIPAS39-208ENST00000556412 OSGEPL1Q9H4B0 414 aa13.85□□□□□ -0.19
VIPAS39-208ENST00000556412 SMYD2Q9NRG4 433 aa13.85□□□□□ -0.19
VIPAS39-208ENST00000556412 TXNDC16Q9P2K2 825 aa13.85□□□□□ -0.19
VIPAS39-208ENST00000556412 SPASTQ9UBP0 616 aa13.85□□□□□ -0.19
VIPAS39-208ENST00000556412 DOLKQ9UPQ8 538 aa13.85□□□□□ -0.19
VIPAS39-208ENST00000556412 KCNK6Q9Y257 313 aa13.85□□□□□ -0.19
VIPAS39-208ENST00000556412 VPS9D1Q9Y2B5 631 aa13.85□□□□□ -0.19
VIPAS39-208ENST00000556412 MYLKQ15746 1914 aa13.84□□□□□ -0.19
VIPAS39-208ENST00000556412 MYO15AQ9UKN7 3530 aa13.84□□□□□ -0.19
VIPAS39-208ENST00000556412 PRMT5O14744 637 aaPredicted RBP13.84□□□□□ -0.19
VIPAS39-208ENST00000556412 CHUKO15111 745 aa13.84□□□□□ -0.19
VIPAS39-208ENST00000556412 KMOO15229 486 aa13.84□□□□□ -0.19
VIPAS39-208ENST00000556412 DFNA5O60443 496 aa13.84□□□□□ -0.19
VIPAS39-208ENST00000556412 PIAS2O75928 621 aa13.84□□□□□ -0.19
VIPAS39-208ENST00000556412 HAUS5O94927 633 aa13.84□□□□□ -0.19
VIPAS39-208ENST00000556412 S1PR4O95977 384 aa13.84□□□□□ -0.19
VIPAS39-208ENST00000556412 OR56A5P0C7T3 313 aa13.84□□□□□ -0.19
VIPAS39-208ENST00000556412 EPHA8P29322 1005 aaPredicted RBP13.84□□□□□ -0.19
VIPAS39-208ENST00000556412 ILF3Q12906 894 aaKnown RBP eCLIP13.84□□□□□ -0.19
VIPAS39-208ENST00000556412 SHBQ15464 509 aa13.84□□□□□ -0.19
VIPAS39-208ENST00000556412 UAP1L1Q3KQV9 507 aa13.84□□□□□ -0.19
VIPAS39-208ENST00000556412 KBTBD12Q3ZCT8 623 aa13.84□□□□□ -0.19
VIPAS39-208ENST00000556412 SLC30A9Q6PML9 568 aa13.84□□□□□ -0.19
VIPAS39-208ENST00000556412 TRMT10CQ7L0Y3 403 aaKnown RBP13.84□□□□□ -0.19
VIPAS39-208ENST00000556412 STRA8Q7Z7C7 330 aa13.84□□□□□ -0.19
VIPAS39-208ENST00000556412 TAF8Q7Z7C8 310 aa13.84□□□□□ -0.19
VIPAS39-208ENST00000556412 ZNF547Q8IVP9 402 aa13.84□□□□□ -0.19
VIPAS39-208ENST00000556412 PPM1NQ8N819 430 aa13.84□□□□□ -0.19
VIPAS39-208ENST00000556412 C2CD4AQ8NCU7 369 aaPredicted RBP13.84□□□□□ -0.19
VIPAS39-208ENST00000556412 ZNF548Q8NEK5 533 aaPredicted RBP13.84□□□□□ -0.19
VIPAS39-208ENST00000556412 LPGAT1Q92604 370 aa13.84□□□□□ -0.19
VIPAS39-208ENST00000556412 FAM136AQ96C01 138 aa13.84□□□□□ -0.19
VIPAS39-208ENST00000556412 SCARF2Q96GP6 870 aaPredicted RBP13.84□□□□□ -0.19
VIPAS39-208ENST00000556412 ZNF514Q96K75 400 aaPredicted RBP13.84□□□□□ -0.19
VIPAS39-208ENST00000556412 CCDC68Q9H2F9 335 aa13.84□□□□□ -0.19
VIPAS39-208ENST00000556412 INTS10Q9NVR2 710 aaKnown RBP13.84□□□□□ -0.19
VIPAS39-208ENST00000556412 UCKL1Q9NWZ5 548 aa13.84□□□□□ -0.19
VIPAS39-208ENST00000556412 GPR179Q6PRD1 2367 aa13.84□□□□□ -0.19
VIPAS39-208ENST00000556412 IQCF5A8MTL0 148 aa13.83□□□□□ -0.2
VIPAS39-208ENST00000556412 CXorf49A8MYA2 514 aaPredicted RBP13.83□□□□□ -0.2
VIPAS39-208ENST00000556412 FFAR2O15552 330 aa13.83□□□□□ -0.2
VIPAS39-208ENST00000556412 AQP9O43315 295 aa13.83□□□□□ -0.2
VIPAS39-208ENST00000556412 POP7O75817 140 aaKnown RBP13.83□□□□□ -0.2
VIPAS39-208ENST00000556412 AP2A2O94973 939 aa13.83□□□□□ -0.2
VIPAS39-208ENST00000556412 TRIM16O95361 564 aa13.83□□□□□ -0.2
VIPAS39-208ENST00000556412 TGM1P22735 817 aa13.83□□□□□ -0.2
VIPAS39-208ENST00000556412 AK4P27144 223 aaPredicted RBP13.83□□□□□ -0.2
VIPAS39-208ENST00000556412 CTBSQ01459 385 aa13.83□□□□□ -0.2
VIPAS39-208ENST00000556412 ELOCQ15369 112 aa13.83□□□□□ -0.2
VIPAS39-208ENST00000556412 CNSTQ6PJW8 725 aa13.83□□□□□ -0.2
VIPAS39-208ENST00000556412 CNTN4Q8IWV2 1026 aa13.83□□□□□ -0.2
VIPAS39-208ENST00000556412 TMEM9BQ9NQ34 198 aa13.83□□□□□ -0.2
VIPAS39-208ENST00000556412 KLC4Q9NSK0 619 aa13.83□□□□□ -0.2
VIPAS39-208ENST00000556412 GNPTGQ9UJJ9 305 aa13.83□□□□□ -0.2
VIPAS39-208ENST00000556412 PSAT1Q9Y617 370 aa13.83□□□□□ -0.2
VIPAS39-208ENST00000556412 FAM159BA6NKW6 160 aa13.83□□□□□ -0.2
VIPAS39-208ENST00000556412 YKT6O15498 198 aa13.83□□□□□ -0.2
VIPAS39-208ENST00000556412 RIPK2O43353 540 aa13.83□□□□□ -0.2
VIPAS39-208ENST00000556412 SGTAO43765 313 aa13.83□□□□□ -0.2
VIPAS39-208ENST00000556412 GDF9O60383 454 aa13.83□□□□□ -0.2
VIPAS39-208ENST00000556412 SNX2O60749 519 aa13.83□□□□□ -0.2
VIPAS39-208ENST00000556412 TUBBP07437 444 aa13.83□□□□□ -0.2
VIPAS39-208ENST00000556412 DGKAP23743 735 aa13.83□□□□□ -0.2
VIPAS39-208ENST00000556412 ACTR1BP42025 376 aa13.83□□□□□ -0.2
VIPAS39-208ENST00000556412 RXRGP48443 463 aa13.83□□□□□ -0.2
VIPAS39-208ENST00000556412 CD151P48509 253 aa13.83□□□□□ -0.2
VIPAS39-208ENST00000556412 PRLHRP49683 370 aa13.83□□□□□ -0.2
VIPAS39-208ENST00000556412 ACTR1AP61163 376 aa13.83□□□□□ -0.2
VIPAS39-208ENST00000556412 LRP8Q14114 963 aa13.83□□□□□ -0.2
VIPAS39-208ENST00000556412 UAP1Q16222 522 aaPredicted RBP13.83□□□□□ -0.2
VIPAS39-208ENST00000556412 BCL7AQ4VC05 210 aa13.83□□□□□ -0.2
VIPAS39-208ENST00000556412 KIAA0408Q6ZU52 694 aa13.83□□□□□ -0.2
VIPAS39-208ENST00000556412 AMZ2Q86W34 360 aa13.83□□□□□ -0.2
VIPAS39-208ENST00000556412 LRRC6Q86X45 466 aa13.83□□□□□ -0.2
VIPAS39-208ENST00000556412 KRT222Q8N1A0 295 aa13.83□□□□□ -0.2
VIPAS39-208ENST00000556412 NDNQ99608 321 aa13.83□□□□□ -0.2
VIPAS39-208ENST00000556412 GSDMCQ9BYG8 508 aa13.83□□□□□ -0.2
VIPAS39-208ENST00000556412 P2RY12Q9H244 342 aa13.83□□□□□ -0.2
VIPAS39-208ENST00000556412 SARS2Q9NP81 518 aaKnown RBP13.83□□□□□ -0.2
VIPAS39-208ENST00000556412 TRNAU1APQ9NX07 287 aaKnown RBP13.83□□□□□ -0.2
VIPAS39-208ENST00000556412 SLC23A2Q9UGH3 650 aa13.83□□□□□ -0.2
VIPAS39-208ENST00000556412 RAB21Q9UL25 225 aa13.83□□□□□ -0.2
VIPAS39-208ENST00000556412 GPR34Q9UPC5 381 aa13.83□□□□□ -0.2
VIPAS39-208ENST00000556412 BPTFQ12830 3046 aa13.83□□□□□ -0.2
VIPAS39-208ENST00000556412 SDK1Q7Z5N4 2213 aa13.82□□□□□ -0.2
VIPAS39-208ENST00000556412 A0A087WUV0 522 aaPredicted RBP13.82□□□□□ -0.2
VIPAS39-208ENST00000556412 F8W8V4 182 aa13.82□□□□□ -0.2
VIPAS39-208ENST00000556412 QSOX1O00391 747 aa13.82□□□□□ -0.2
VIPAS39-208ENST00000556412 AHSGP02765 367 aa13.82□□□□□ -0.2
VIPAS39-208ENST00000556412 FTH1P02794 183 aa13.82□□□□□ -0.2
VIPAS39-208ENST00000556412 VCLP18206 1134 aa13.82□□□□□ -0.2
VIPAS39-208ENST00000556412 CHRM3P20309 590 aa13.82□□□□□ -0.2
VIPAS39-208ENST00000556412 LEPRP48357 1165 aaKnown RBP13.82□□□□□ -0.2
VIPAS39-208ENST00000556412 BRD3Q15059 726 aa13.82□□□□□ -0.2
VIPAS39-208ENST00000556412 SEPT7Q16181 437 aaKnown RBP13.82□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 29.1 ms