RNA–Protein interactions for RNA: ENST00000556353.1

PRPF39-209, Transcript of pre-mRNA processing factor 39, humanhuman

TSL 2

Gene PRPF39, Length 687 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF39-209ENST00000556353 POLR3CQ9BUI4 534 aaPredicted RBP4.83□□□□□ -1.64
PRPF39-209ENST00000556353 HCFC1R1Q9NWW0 138 aa4.83□□□□□ -1.64
PRPF39-209ENST00000556353 DDX43Q9NXZ2 648 aaKnown RBP4.83□□□□□ -1.64
PRPF39-209ENST00000556353 AAR2Q9Y312 384 aaKnown RBP4.83□□□□□ -1.64
PRPF39-209ENST00000556353 CEPT1Q9Y6K0 416 aa4.83□□□□□ -1.64
PRPF39-209ENST00000556353 NCAPD2Q15021 1401 aa4.82□□□□□ -1.64
PRPF39-209ENST00000556353 ANKRD36BQ8N2N9 1353 aa4.82□□□□□ -1.64
PRPF39-209ENST00000556353 TONSLQ96HA7 1378 aa4.82□□□□□ -1.64
PRPF39-209ENST00000556353 USP47Q96K76 1375 aa4.82□□□□□ -1.64
PRPF39-209ENST00000556353 MAP3K19Q56UN5 1328 aa4.82□□□□□ -1.64
PRPF39-209ENST00000556353 CNTFP26441 200 aa4.82□□□□□ -1.64
PRPF39-209ENST00000556353 GALNT2Q10471 571 aa4.82□□□□□ -1.64
PRPF39-209ENST00000556353 TRPC3Q13507 836 aa4.82□□□□□ -1.64
PRPF39-209ENST00000556353 SIRPB2Q5JXA9 342 aa4.82□□□□□ -1.64
PRPF39-209ENST00000556353 SIGIRRQ6IA17 410 aa4.82□□□□□ -1.64
PRPF39-209ENST00000556353 TTI2Q6NXR4 508 aa4.82□□□□□ -1.64
PRPF39-209ENST00000556353 BRAT1Q6PJG6 821 aa4.82□□□□□ -1.64
PRPF39-209ENST00000556353 CYP26C1Q6V0L0 522 aa4.82□□□□□ -1.64
PRPF39-209ENST00000556353 CTCFLQ8NI51 663 aaPredicted RBP4.82□□□□□ -1.64
PRPF39-209ENST00000556353 UBXN10Q96LJ8 280 aa4.82□□□□□ -1.64
PRPF39-209ENST00000556353 SCLT1Q96NL6 688 aa4.82□□□□□ -1.64
PRPF39-209ENST00000556353 PCYT2Q99447 389 aa4.82□□□□□ -1.64
PRPF39-209ENST00000556353 RBM4Q9BWF3 364 aaKnown RBP4.82□□□□□ -1.64
PRPF39-209ENST00000556353 VEZTQ9HBM0 779 aa4.82□□□□□ -1.64
PRPF39-209ENST00000556353 KCND2Q9NZV8 630 aa4.82□□□□□ -1.64
PRPF39-209ENST00000556353 SCN11AQ9UI33 1791 aa4.82□□□□□ -1.64
PRPF39-209ENST00000556353 SMCHD1A6NHR9 2005 aa4.82□□□□□ -1.64
PRPF39-209ENST00000556353 N4BP2Q86UW6 1770 aaPredicted RBP4.81□□□□□ -1.64
PRPF39-209ENST00000556353 TJP1Q07157 1748 aa4.81□□□□□ -1.64
PRPF39-209ENST00000556353 PTPRCP08575 1304 aa4.81□□□□□ -1.64
PRPF39-209ENST00000556353 CLSPNQ9HAW4 1339 aa4.81□□□□□ -1.64
PRPF39-209ENST00000556353 ZNF831Q5JPB2 1677 aa4.81□□□□□ -1.64
PRPF39-209ENST00000556353 ADAMTS7Q9UKP4 1686 aa4.81□□□□□ -1.64
PRPF39-209ENST00000556353 PMS2P5A8MQ11 134 aa4.81□□□□□ -1.64
PRPF39-209ENST00000556353 LDLRAD4O15165 306 aa4.81□□□□□ -1.64
PRPF39-209ENST00000556353 SPINT2O43291 252 aa4.81□□□□□ -1.64
PRPF39-209ENST00000556353 EGFP01133 1207 aa4.81□□□□□ -1.64
PRPF39-209ENST00000556353 RNF224P0DH78 156 aa4.81□□□□□ -1.64
PRPF39-209ENST00000556353 PAX1P15863 534 aa4.81□□□□□ -1.64
PRPF39-209ENST00000556353 PTMSP20962 102 aa4.81□□□□□ -1.64
PRPF39-209ENST00000556353 CDAP32320 146 aa4.81□□□□□ -1.64
PRPF39-209ENST00000556353 ARL1P40616 181 aaPredicted RBP4.81□□□□□ -1.64
PRPF39-209ENST00000556353 FASLGP48023 281 aa4.81□□□□□ -1.64
PRPF39-209ENST00000556353 MMP14P50281 582 aa4.81□□□□□ -1.64
PRPF39-209ENST00000556353 GAGE5Q13069 117 aa4.81□□□□□ -1.64
PRPF39-209ENST00000556353 GAGE6Q13070 117 aa4.81□□□□□ -1.64
PRPF39-209ENST00000556353 USP41Q3LFD5 358 aa4.81□□□□□ -1.64
PRPF39-209ENST00000556353 TMEM30BQ3MIR4 351 aa4.81□□□□□ -1.64
PRPF39-209ENST00000556353 TMEM35AQ53FP2 167 aa4.81□□□□□ -1.64
PRPF39-209ENST00000556353 C6orf141Q5SZD1 244 aa4.81□□□□□ -1.64
PRPF39-209ENST00000556353 FAM76AQ8TAV0 307 aa4.81□□□□□ -1.64
PRPF39-209ENST00000556353 F2RL3Q96RI0 385 aa4.81□□□□□ -1.64
PRPF39-209ENST00000556353 NEURL2Q9BR09 285 aa4.81□□□□□ -1.64
PRPF39-209ENST00000556353 BARHL1Q9BZE3 327 aa4.81□□□□□ -1.64
PRPF39-209ENST00000556353 RTL1A6NKG5 1358 aa4.8□□□□□ -1.64
PRPF39-209ENST00000556353 CICQ96RK0 1608 aaPredicted RBP4.8□□□□□ -1.64
PRPF39-209ENST00000556353 LRRC53A6NM62 1247 aa4.8□□□□□ -1.64
PRPF39-209ENST00000556353 VCYO14598 125 aa4.8□□□□□ -1.64
PRPF39-209ENST00000556353 ZNHIT1O43257 154 aa4.8□□□□□ -1.64
PRPF39-209ENST00000556353 POLBP06746 335 aa4.8□□□□□ -1.64
PRPF39-209ENST00000556353 POLR2CP19387 275 aaPredicted RBP4.8□□□□□ -1.64
PRPF39-209ENST00000556353 HOXC9P31274 260 aa4.8□□□□□ -1.64
PRPF39-209ENST00000556353 ABCD1P33897 745 aa4.8□□□□□ -1.64
PRPF39-209ENST00000556353 PAFAH1B1P43034 410 aa4.8□□□□□ -1.64
PRPF39-209ENST00000556353 CCT5P48643 541 aa4.8□□□□□ -1.64
PRPF39-209ENST00000556353 AMPHP49418 695 aa4.8□□□□□ -1.64
PRPF39-209ENST00000556353 NR0B1P51843 470 aaKnown RBP4.8□□□□□ -1.64
PRPF39-209ENST00000556353 PMP22Q01453 160 aa4.8□□□□□ -1.64
PRPF39-209ENST00000556353 BAK1Q16611 211 aa4.8□□□□□ -1.64
PRPF39-209ENST00000556353 COL28A1Q2UY09 1125 aa4.8□□□□□ -1.64
PRPF39-209ENST00000556353 LCE1FQ5T754 118 aa4.8□□□□□ -1.64
PRPF39-209ENST00000556353 GRAMD2BQ96HH9 432 aa4.8□□□□□ -1.64
PRPF39-209ENST00000556353 TMEM47Q9BQJ4 181 aa4.8□□□□□ -1.64
PRPF39-209ENST00000556353 SARDHQ9UL12 918 aa4.8□□□□□ -1.64
PRPF39-209ENST00000556353 DGKBQ9Y6T7 804 aa4.8□□□□□ -1.64
PRPF39-209ENST00000556353 NSD3Q9BZ95 1437 aa4.8□□□□□ -1.64
PRPF39-209ENST00000556353 AFDNP55196 1824 aaKnown RBP4.79□□□□□ -1.64
PRPF39-209ENST00000556353 SIPA1L3O60292 1781 aaPredicted RBP4.79□□□□□ -1.64
PRPF39-209ENST00000556353 UBR2Q8IWV8 1755 aa4.79□□□□□ -1.64
PRPF39-209ENST00000556353 SEC31AO94979 1220 aaKnown RBP4.79□□□□□ -1.64
PRPF39-209ENST00000556353 HSD17B4P51659 736 aa4.79□□□□□ -1.64
PRPF39-209ENST00000556353 TAS2R38P59533 333 aa4.79□□□□□ -1.64
PRPF39-209ENST00000556353 NEXNQ0ZGT2 675 aa4.79□□□□□ -1.64
PRPF39-209ENST00000556353 FGFBP1Q14512 234 aa4.79□□□□□ -1.64
PRPF39-209ENST00000556353 DRAP1Q14919 205 aaPredicted RBP4.79□□□□□ -1.64
PRPF39-209ENST00000556353 RRS1Q15050 365 aaKnown RBP4.79□□□□□ -1.64
PRPF39-209ENST00000556353 SLC15A2Q16348 729 aa4.79□□□□□ -1.64
PRPF39-209ENST00000556353 GSTA3Q16772 222 aa4.79□□□□□ -1.64
PRPF39-209ENST00000556353 C14orf177Q52M58 125 aa4.79□□□□□ -1.64
PRPF39-209ENST00000556353 SLC35E4Q6ICL7 350 aa4.79□□□□□ -1.64
PRPF39-209ENST00000556353 OR7E24Q6IFN5 339 aa4.79□□□□□ -1.64
PRPF39-209ENST00000556353 ZNF280DQ6N043 979 aa4.79□□□□□ -1.64
PRPF39-209ENST00000556353 ARHGAP11AQ6P4F7 1023 aa4.79□□□□□ -1.64
PRPF39-209ENST00000556353 FAM171BQ6P995 826 aa4.79□□□□□ -1.64
PRPF39-209ENST00000556353 CEACAM20Q6UY09 585 aa4.79□□□□□ -1.64
PRPF39-209ENST00000556353 CACNA2D4Q7Z3S7 1137 aa4.79□□□□□ -1.64
PRPF39-209ENST00000556353 GPR180Q86V85 440 aa4.79□□□□□ -1.64
PRPF39-209ENST00000556353 BEST3Q8N1M1 668 aa4.79□□□□□ -1.64
PRPF39-209ENST00000556353 KLHDC9Q8NEP7 349 aa4.79□□□□□ -1.64
PRPF39-209ENST00000556353 CADM4Q8NFZ8 388 aa4.79□□□□□ -1.64
Retrieved 100 of 20,778 RNA–protein pairs in 28.5 ms