RNA–Protein interactions for RNA: ENST00000555550.1

SCFD1-216, Transcript of sec1 family domain containing 1, humanhuman

TSL 4

Gene SCFD1, Length 541 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-216ENST00000555550 C1orf52Q8N6N3 182 aaKnown RBP3.54□□□□□ -1.84
SCFD1-216ENST00000555550 PDILTQ8N807 584 aa3.54□□□□□ -1.84
SCFD1-216ENST00000555550 GSDMBQ8TAX9 411 aa3.54□□□□□ -1.84
SCFD1-216ENST00000555550 PERPQ96FX8 193 aa3.54□□□□□ -1.84
SCFD1-216ENST00000555550 PRMT6Q96LA8 375 aaPredicted RBP3.54□□□□□ -1.84
SCFD1-216ENST00000555550 C17orf77Q96MU5 243 aa3.54□□□□□ -1.84
SCFD1-216ENST00000555550 SEPT5Q99719 369 aaPredicted RBP3.54□□□□□ -1.84
SCFD1-216ENST00000555550 PSD2Q9BQI7 771 aa3.54□□□□□ -1.84
SCFD1-216ENST00000555550 SLC26A6Q9BXS9 759 aa3.54□□□□□ -1.84
SCFD1-216ENST00000555550 RAD21L1Q9H4I0 556 aa3.54□□□□□ -1.84
SCFD1-216ENST00000555550 EPB41L5Q9HCM4 733 aa3.54□□□□□ -1.84
SCFD1-216ENST00000555550 PTTG2Q9NZH5 202 aa3.54□□□□□ -1.84
SCFD1-216ENST00000555550 EHD2Q9NZN4 543 aa3.54□□□□□ -1.84
SCFD1-216ENST00000555550 A0A1W2PQF6 199 aa3.53□□□□□ -1.84
SCFD1-216ENST00000555550 H0YIN7 160 aa3.53□□□□□ -1.84
SCFD1-216ENST00000555550 MAP2K7O14733 419 aa3.53□□□□□ -1.84
SCFD1-216ENST00000555550 HCRTR2O43614 444 aa3.53□□□□□ -1.84
SCFD1-216ENST00000555550 CRLF1O75462 422 aa3.53□□□□□ -1.84
SCFD1-216ENST00000555550 GPC4O75487 556 aa3.53□□□□□ -1.84
SCFD1-216ENST00000555550 DAB1O75553 588 aa3.53□□□□□ -1.84
SCFD1-216ENST00000555550 LIPFP07098 398 aa3.53□□□□□ -1.84
SCFD1-216ENST00000555550 ELF1P32519 619 aa3.53□□□□□ -1.84
SCFD1-216ENST00000555550 NR2C2P49116 596 aa3.53□□□□□ -1.84
SCFD1-216ENST00000555550 CTSCP53634 463 aa3.53□□□□□ -1.84
SCFD1-216ENST00000555550 NIPAL4Q0D2K0 466 aa3.53□□□□□ -1.84
SCFD1-216ENST00000555550 G3BP1Q13283 466 aaKnown RBP eCLIP3.53□□□□□ -1.84
SCFD1-216ENST00000555550 MED22Q15528 200 aa3.53□□□□□ -1.84
SCFD1-216ENST00000555550 DUOXA1Q1HG43 343 aa3.53□□□□□ -1.84
SCFD1-216ENST00000555550 NDUFAF5Q5TEU4 345 aa3.53□□□□□ -1.84
SCFD1-216ENST00000555550 BSPRYQ5W0U4 402 aa3.53□□□□□ -1.84
SCFD1-216ENST00000555550 LCN10Q6JVE6 187 aa3.53□□□□□ -1.84
SCFD1-216ENST00000555550 MMS22LQ6ZRQ5 1243 aa3.53□□□□□ -1.84
SCFD1-216ENST00000555550 KRTAP5-2Q701N4 177 aa3.53□□□□□ -1.84
SCFD1-216ENST00000555550 ANO5Q75V66 913 aa3.53□□□□□ -1.84
SCFD1-216ENST00000555550 ARHGAP12Q8IWW6 846 aa3.53□□□□□ -1.84
SCFD1-216ENST00000555550 EXOC8Q8IYI6 725 aa3.53□□□□□ -1.84
SCFD1-216ENST00000555550 ADAD2Q8NCV1 583 aaKnown RBP3.53□□□□□ -1.84
SCFD1-216ENST00000555550 ZNF473Q8WTR7 871 aaKnown RBP3.53□□□□□ -1.84
SCFD1-216ENST00000555550 FCAMRQ8WWV6 532 aa3.53□□□□□ -1.84
SCFD1-216ENST00000555550 EGLN2Q96KS0 407 aa3.53□□□□□ -1.84
SCFD1-216ENST00000555550 NUDCD1Q96RS6 583 aa3.53□□□□□ -1.84
SCFD1-216ENST00000555550 DCTN5Q9BTE1 182 aa3.53□□□□□ -1.84
SCFD1-216ENST00000555550 PDZD7Q9H5P4 517 aa3.53□□□□□ -1.84
SCFD1-216ENST00000555550 APOBEC3GQ9HC16 384 aaKnown RBP3.53□□□□□ -1.84
SCFD1-216ENST00000555550 ZBTB20Q9HC78 741 aaPredicted RBP3.53□□□□□ -1.84
SCFD1-216ENST00000555550 B3GALT5Q9Y2C3 310 aa3.53□□□□□ -1.84
SCFD1-216ENST00000555550 PLPP2O43688 288 aa3.52□□□□□ -1.85
SCFD1-216ENST00000555550 HIST1H2ABP04908 130 aa3.52□□□□□ -1.85
SCFD1-216ENST00000555550 EIF2S1P05198 315 aaKnown RBP3.52□□□□□ -1.85
SCFD1-216ENST00000555550 CLEC3BP05452 202 aa3.52□□□□□ -1.85
SCFD1-216ENST00000555550 PRSS56P0CW18 603 aa3.52□□□□□ -1.85
SCFD1-216ENST00000555550 TMEM11P17152 192 aa3.52□□□□□ -1.85
SCFD1-216ENST00000555550 MSH3P20585 1137 aa3.52□□□□□ -1.85
SCFD1-216ENST00000555550 HIST1H2ADP20671 130 aa3.52□□□□□ -1.85
SCFD1-216ENST00000555550 ZC2HC1CQ53FD0 456 aaPredicted RBP3.52□□□□□ -1.85
SCFD1-216ENST00000555550 INTS11Q5TA45 600 aaKnown RBP3.52□□□□□ -1.85
SCFD1-216ENST00000555550 GLDNQ6ZMI3 551 aaPredicted RBP3.52□□□□□ -1.85
SCFD1-216ENST00000555550 Q75L30 129 aa3.52□□□□□ -1.85
SCFD1-216ENST00000555550 HIST3H2AQ7L7L0 130 aa3.52□□□□□ -1.85
SCFD1-216ENST00000555550 ATG9AQ7Z3C6 839 aa3.52□□□□□ -1.85
SCFD1-216ENST00000555550 SH2D6Q7Z4S9 175 aa3.52□□□□□ -1.85
SCFD1-216ENST00000555550 TMTC2Q8N394 836 aa3.52□□□□□ -1.85
SCFD1-216ENST00000555550 GCSAMQ8N6F7 178 aa3.52□□□□□ -1.85
SCFD1-216ENST00000555550 PCYOX1LQ8NBM8 494 aa3.52□□□□□ -1.85
SCFD1-216ENST00000555550 NAXEQ8NCW5 288 aa3.52□□□□□ -1.85
SCFD1-216ENST00000555550 MAPK1IP1LQ8NDC0 245 aa3.52□□□□□ -1.85
SCFD1-216ENST00000555550 HCAR2Q8TDS4 363 aa3.52□□□□□ -1.85
SCFD1-216ENST00000555550 RFFLQ8WZ73 363 aa3.52□□□□□ -1.85
SCFD1-216ENST00000555550 ARHGEF2Q92974 986 aaKnown RBP3.52□□□□□ -1.85
SCFD1-216ENST00000555550 LRR1Q96L50 414 aa3.52□□□□□ -1.85
SCFD1-216ENST00000555550 NCAPGQ9BPX3 1015 aa3.52□□□□□ -1.85
SCFD1-216ENST00000555550 ADPRHL2Q9NX46 363 aa3.52□□□□□ -1.85
SCFD1-216ENST00000555550 MTMR10Q9NXD2 777 aa3.52□□□□□ -1.85
SCFD1-216ENST00000555550 DBNLQ9UJU6 430 aaKnown RBP3.52□□□□□ -1.85
SCFD1-216ENST00000555550 MTMR6Q9Y217 621 aa3.52□□□□□ -1.85
SCFD1-216ENST00000555550 TMEM98Q9Y2Y6 226 aa3.52□□□□□ -1.85
SCFD1-216ENST00000555550 YIPF1Q9Y548 306 aa3.52□□□□□ -1.85
SCFD1-216ENST00000555550 C5orf60A6NFR6 353 aa3.51□□□□□ -1.85
SCFD1-216ENST00000555550 ANXA7P20073 488 aaKnown RBP3.51□□□□□ -1.85
SCFD1-216ENST00000555550 ZNF10P21506 573 aaPredicted RBP3.51□□□□□ -1.85
SCFD1-216ENST00000555550 EPHA2P29317 976 aa3.51□□□□□ -1.85
SCFD1-216ENST00000555550 HOXA13P31271 388 aaPredicted RBP3.51□□□□□ -1.85
SCFD1-216ENST00000555550 MSH2P43246 934 aa3.51□□□□□ -1.85
SCFD1-216ENST00000555550 ALFQ53S48 1182 aa3.51□□□□□ -1.85
SCFD1-216ENST00000555550 ACSM2BQ68CK6 577 aa3.51□□□□□ -1.85
SCFD1-216ENST00000555550 ZNF790Q6PG37 636 aa3.51□□□□□ -1.85
SCFD1-216ENST00000555550 SPAG16Q8N0X2 631 aa3.51□□□□□ -1.85
SCFD1-216ENST00000555550 SLC38A9Q8NBW4 561 aa3.51□□□□□ -1.85
SCFD1-216ENST00000555550 IL17REQ8NFR9 667 aa3.51□□□□□ -1.85
SCFD1-216ENST00000555550 C1orf74Q96LT6 269 aa3.51□□□□□ -1.85
SCFD1-216ENST00000555550 PYGO2Q9BRQ0 406 aa3.51□□□□□ -1.85
SCFD1-216ENST00000555550 SEMA6AQ9H2E6 1030 aa3.51□□□□□ -1.85
SCFD1-216ENST00000555550 DIAPH3Q9NSV4 1193 aa3.51□□□□□ -1.85
SCFD1-216ENST00000555550 ECHDC1Q9NTX5 307 aa3.51□□□□□ -1.85
SCFD1-216ENST00000555550 OGFRQ9NZT2 677 aa3.51□□□□□ -1.85
SCFD1-216ENST00000555550 TMEM189-UBE2V1I3L0A0 370 aa3.5□□□□□ -1.85
SCFD1-216ENST00000555550 PLOD2O00469 737 aa3.5□□□□□ -1.85
SCFD1-216ENST00000555550 SMAD9O15198 467 aaKnown RBP3.5□□□□□ -1.85
SCFD1-216ENST00000555550 OGG1O15527 345 aa3.5□□□□□ -1.85
SCFD1-216ENST00000555550 ERVK-10P10266 1014 aa3.5□□□□□ -1.85
Retrieved 100 of 20,778 RNA–protein pairs in 30.3 ms