RNA–Protein interactions for RNA: ENST00000552720.5

LIMA1-213, Transcript of LIM domain and actin binding 1, humanhuman

TSL 1 (best)

Gene LIMA1, Length 2,457 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-213ENST00000552720 OGFOD2Q6N063 350 aa7.42□□□□□ -1.22
LIMA1-213ENST00000552720 ELMSAN1Q6PJG2 1045 aa7.42□□□□□ -1.22
LIMA1-213ENST00000552720 GLB1LQ6UWU2 654 aa7.42□□□□□ -1.22
LIMA1-213ENST00000552720 RNF19BQ6ZMZ0 732 aa7.42□□□□□ -1.22
LIMA1-213ENST00000552720 TMEM26Q6ZUK4 368 aa7.42□□□□□ -1.22
LIMA1-213ENST00000552720 PTRH1Q86Y79 214 aaKnown RBP7.42□□□□□ -1.22
LIMA1-213ENST00000552720 ALDH16A1Q8IZ83 802 aa7.42□□□□□ -1.22
LIMA1-213ENST00000552720 SFRP1Q8N474 314 aa7.42□□□□□ -1.22
LIMA1-213ENST00000552720 PACRGLQ8N7B6 248 aa7.42□□□□□ -1.22
LIMA1-213ENST00000552720 FAM86B1Q8N7N1 296 aa7.42□□□□□ -1.22
LIMA1-213ENST00000552720 CD200R1Q8TD46 325 aa7.42□□□□□ -1.22
LIMA1-213ENST00000552720 SEPT8Q92599 483 aa7.42□□□□□ -1.22
LIMA1-213ENST00000552720 SGCDQ92629 289 aa7.42□□□□□ -1.22
LIMA1-213ENST00000552720 CHID1Q9BWS9 393 aa7.42□□□□□ -1.22
LIMA1-213ENST00000552720 SEZ6LQ9BYH1 1024 aa7.42□□□□□ -1.22
LIMA1-213ENST00000552720 ACTL8Q9H568 366 aa7.42□□□□□ -1.22
LIMA1-213ENST00000552720 POLR1BQ9H9Y6 1135 aa7.42□□□□□ -1.22
LIMA1-213ENST00000552720 NTN4Q9HB63 628 aa7.42□□□□□ -1.22
LIMA1-213ENST00000552720 TLR9Q9NR96 1032 aa7.42□□□□□ -1.22
LIMA1-213ENST00000552720 INTS10Q9NVR2 710 aaKnown RBP7.42□□□□□ -1.22
LIMA1-213ENST00000552720 SMPD3Q9NY59 655 aaPredicted RBP7.42□□□□□ -1.22
LIMA1-213ENST00000552720 CD274Q9NZQ7 290 aa7.42□□□□□ -1.22
LIMA1-213ENST00000552720 ANAPC2Q9UJX6 822 aa7.42□□□□□ -1.22
LIMA1-213ENST00000552720 A0A1W2PPW3 197 aa7.41□□□□□ -1.22
LIMA1-213ENST00000552720 NT5C1B-RDH14C9J2C7 533 aa7.41□□□□□ -1.22
LIMA1-213ENST00000552720 ADAMTS4O75173 837 aa7.41□□□□□ -1.22
LIMA1-213ENST00000552720 GJB5O95377 273 aa7.41□□□□□ -1.22
LIMA1-213ENST00000552720 PRAMEF12O95522 483 aa7.41□□□□□ -1.22
LIMA1-213ENST00000552720 EPOP01588 193 aa7.41□□□□□ -1.22
LIMA1-213ENST00000552720 GPIP06744 558 aa7.41□□□□□ -1.22
LIMA1-213ENST00000552720 CNPP09543 421 aaKnown RBP7.41□□□□□ -1.22
LIMA1-213ENST00000552720 TFPTP0C1Z6 253 aa7.41□□□□□ -1.22
LIMA1-213ENST00000552720 UROSP10746 265 aa7.41□□□□□ -1.22
LIMA1-213ENST00000552720 G6PDP11413 515 aa7.41□□□□□ -1.22
LIMA1-213ENST00000552720 CA5AP35218 305 aa7.41□□□□□ -1.22
LIMA1-213ENST00000552720 PIK3CGP48736 1102 aa7.41□□□□□ -1.22
LIMA1-213ENST00000552720 IST1P53990 364 aa7.41□□□□□ -1.22
LIMA1-213ENST00000552720 YBEYP58557 167 aaPredicted RBP7.41□□□□□ -1.22
LIMA1-213ENST00000552720 GNA12Q03113 381 aa7.41□□□□□ -1.22
LIMA1-213ENST00000552720 DUSP4Q13115 394 aa7.41□□□□□ -1.22
LIMA1-213ENST00000552720 ZRANB3Q5FWF4 1079 aa7.41□□□□□ -1.22
LIMA1-213ENST00000552720 FGD3Q5JSP0 725 aa7.41□□□□□ -1.22
LIMA1-213ENST00000552720 TMTC4Q5T4D3 741 aa7.41□□□□□ -1.22
LIMA1-213ENST00000552720 LINGO4Q6UY18 593 aa7.41□□□□□ -1.22
LIMA1-213ENST00000552720 KCTD8Q6ZWB6 473 aa7.41□□□□□ -1.22
LIMA1-213ENST00000552720 ITIH5Q86UX2 942 aa7.41□□□□□ -1.22
LIMA1-213ENST00000552720 DTWD1Q8N5C7 304 aa7.41□□□□□ -1.22
LIMA1-213ENST00000552720 DHRSXQ8N5I4 330 aa7.41□□□□□ -1.22
LIMA1-213ENST00000552720 SNRNP27Q8WVK2 155 aaKnown RBP7.41□□□□□ -1.22
LIMA1-213ENST00000552720 FUBP3Q96I24 572 aaKnown RBP eCLIP7.41□□□□□ -1.22
LIMA1-213ENST00000552720 MGME1Q9BQP7 344 aa7.41□□□□□ -1.22
LIMA1-213ENST00000552720 CINPQ9BW66 212 aaPredicted RBP7.41□□□□□ -1.22
LIMA1-213ENST00000552720 CARS2Q9HA77 564 aaKnown RBP7.41□□□□□ -1.22
LIMA1-213ENST00000552720 CXorf21Q9HAI6 301 aa7.41□□□□□ -1.22
LIMA1-213ENST00000552720 TLR8Q9NR97 1041 aaKnown RBP7.41□□□□□ -1.22
LIMA1-213ENST00000552720 IL37Q9NZH6 218 aa7.41□□□□□ -1.22
LIMA1-213ENST00000552720 UTS2RQ9UKP6 389 aa7.41□□□□□ -1.22
LIMA1-213ENST00000552720 TDRKHQ9Y2W6 561 aaKnown RBP7.41□□□□□ -1.22
LIMA1-213ENST00000552720 PDE4DIPQ5VU43 2346 aa7.41□□□□□ -1.22
LIMA1-213ENST00000552720 FAM92AA1XBS5 289 aa7.41□□□□□ -1.22
LIMA1-213ENST00000552720 TRIM64A6NGJ6 449 aa7.41□□□□□ -1.22
LIMA1-213ENST00000552720 F5H5T6 163 aa7.41□□□□□ -1.22
LIMA1-213ENST00000552720 H3BMQ9 156 aa7.41□□□□□ -1.22
LIMA1-213ENST00000552720 CBX4O00257 560 aa7.41□□□□□ -1.22
LIMA1-213ENST00000552720 INSIG1O15503 277 aa7.41□□□□□ -1.22
LIMA1-213ENST00000552720 CAPN1P07384 714 aa7.41□□□□□ -1.22
LIMA1-213ENST00000552720 PKMP14618 531 aaKnown RBP7.41□□□□□ -1.22
LIMA1-213ENST00000552720 ITGB6P18564 788 aa7.41□□□□□ -1.22
LIMA1-213ENST00000552720 CCND3P30281 292 aaPredicted RBP7.41□□□□□ -1.22
LIMA1-213ENST00000552720 SHMT2P34897 504 aa7.41□□□□□ -1.22
LIMA1-213ENST00000552720 GGT5P36269 586 aa7.41□□□□□ -1.22
LIMA1-213ENST00000552720 CAPGP40121 348 aa7.41□□□□□ -1.22
LIMA1-213ENST00000552720 MAPKAPK2P49137 400 aa7.41□□□□□ -1.22
LIMA1-213ENST00000552720 ESRRGP62508 458 aa7.41□□□□□ -1.22
LIMA1-213ENST00000552720 ERVK-8P63133 956 aa7.41□□□□□ -1.22
LIMA1-213ENST00000552720 FOXM1Q08050 763 aa7.41□□□□□ -1.22
LIMA1-213ENST00000552720 C16orf72Q14CZ0 275 aa7.41□□□□□ -1.22
LIMA1-213ENST00000552720 TGFBIQ15582 683 aa7.41□□□□□ -1.22
LIMA1-213ENST00000552720 COQ5Q5HYK3 327 aa7.41□□□□□ -1.22
LIMA1-213ENST00000552720 AARS2Q5JTZ9 985 aaKnown RBP7.41□□□□□ -1.22
LIMA1-213ENST00000552720 GLYATQ6IB77 296 aa7.41□□□□□ -1.22
LIMA1-213ENST00000552720 AFTPHQ6ULP2 937 aa7.41□□□□□ -1.22
LIMA1-213ENST00000552720 IL27RAQ6UWB1 636 aa7.41□□□□□ -1.22
LIMA1-213ENST00000552720 DLEU7Q6UYE1 221 aa7.41□□□□□ -1.22
LIMA1-213ENST00000552720 GPRIN3Q6ZVF9 776 aa7.41□□□□□ -1.22
LIMA1-213ENST00000552720 C16orf59Q7L2K0 433 aa7.41□□□□□ -1.22
LIMA1-213ENST00000552720 SPATA19Q7Z5L4 167 aa7.41□□□□□ -1.22
LIMA1-213ENST00000552720 GPSM1Q86YR5 675 aa7.41□□□□□ -1.22
LIMA1-213ENST00000552720 HS3ST5Q8IZT8 346 aa7.41□□□□□ -1.22
LIMA1-213ENST00000552720 NAT16Q8N8M0 369 aa7.41□□□□□ -1.22
LIMA1-213ENST00000552720 PEX13Q92968 403 aa7.41□□□□□ -1.22
LIMA1-213ENST00000552720 ISG20Q96AZ6 181 aaKnown RBP7.41□□□□□ -1.22
LIMA1-213ENST00000552720 COG8Q96MW5 612 aa7.41□□□□□ -1.22
LIMA1-213ENST00000552720 MUS81Q96NY9 551 aa7.41□□□□□ -1.22
LIMA1-213ENST00000552720 TDRD1Q9BXT4 1180 aaKnown RBP7.41□□□□□ -1.22
LIMA1-213ENST00000552720 BRINP2Q9C0B6 783 aa7.41□□□□□ -1.22
LIMA1-213ENST00000552720 HACD3Q9P035 362 aa7.41□□□□□ -1.22
LIMA1-213ENST00000552720 UBA2Q9UBT2 640 aaPredicted RBP7.41□□□□□ -1.22
LIMA1-213ENST00000552720 LEF1Q9UJU2 399 aaPredicted RBP7.41□□□□□ -1.22
LIMA1-213ENST00000552720 NEUROG3Q9Y4Z2 214 aa7.41□□□□□ -1.22
Retrieved 100 of 20,778 RNA–protein pairs in 37.3 ms