RNA–Protein interactions for RNA: ENST00000550331.1

NEK3-201, Transcript of NIMA related kinase 3, humanhuman

TSL 2

Gene NEK3, Length 733 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEK3-201ENST00000550331 TMEM184BQ9Y519 407 aaPredicted RBP7.53□□□□□ -1.2
NEK3-201ENST00000550331 SDK2Q58EX2 2172 aa7.53□□□□□ -1.2
NEK3-201ENST00000550331 RP1L1Q8IWN7 2480 aaPredicted RBP7.53□□□□□ -1.2
NEK3-201ENST00000550331 SPENQ96T58 3664 aaKnown RBP7.53□□□□□ -1.2
NEK3-201ENST00000550331 TRBV23OR9-2A0A075B6M9 112 aa7.52□□□□□ -1.21
NEK3-201ENST00000550331 ENO4A6NNW6 628 aa7.52□□□□□ -1.21
NEK3-201ENST00000550331 A8MU76 341 aa7.52□□□□□ -1.21
NEK3-201ENST00000550331 ZNF487B1APH4 448 aa7.52□□□□□ -1.21
NEK3-201ENST00000550331 KCNK1O00180 336 aa7.52□□□□□ -1.21
NEK3-201ENST00000550331 POLR1CO15160 346 aaPredicted RBP7.52□□□□□ -1.21
NEK3-201ENST00000550331 TOX3O15405 576 aaPredicted RBP7.52□□□□□ -1.21
NEK3-201ENST00000550331 DYRK3O43781 588 aa7.52□□□□□ -1.21
NEK3-201ENST00000550331 STK17BO94768 372 aa7.52□□□□□ -1.21
NEK3-201ENST00000550331 MTA2O94776 668 aa7.52□□□□□ -1.21
NEK3-201ENST00000550331 MMP2P08253 660 aa7.52□□□□□ -1.21
NEK3-201ENST00000550331 XRCC1P18887 633 aaPredicted RBP7.52□□□□□ -1.21
NEK3-201ENST00000550331 GJC1P36383 396 aa7.52□□□□□ -1.21
NEK3-201ENST00000550331 CD86P42081 329 aa7.52□□□□□ -1.21
NEK3-201ENST00000550331 NOP2P46087 812 aaKnown RBP7.52□□□□□ -1.21
NEK3-201ENST00000550331 DCDC1P59894 354 aa7.52□□□□□ -1.21
NEK3-201ENST00000550331 UBE2IP63279 158 aaKnown RBP7.52□□□□□ -1.21
NEK3-201ENST00000550331 FANCCQ00597 558 aa7.52□□□□□ -1.21
NEK3-201ENST00000550331 MC1RQ01726 317 aa7.52□□□□□ -1.21
NEK3-201ENST00000550331 PPIDQ08752 370 aaKnown RBP7.52□□□□□ -1.21
NEK3-201ENST00000550331 ABHD18Q0P651 414 aa7.52□□□□□ -1.21
NEK3-201ENST00000550331 CDC20Q12834 499 aa7.52□□□□□ -1.21
NEK3-201ENST00000550331 NFKBIBQ15653 356 aa7.52□□□□□ -1.21
NEK3-201ENST00000550331 ATP13A4Q4VNC1 1196 aa7.52□□□□□ -1.21
NEK3-201ENST00000550331 ZNF569Q5MCW4 686 aa7.52□□□□□ -1.21
NEK3-201ENST00000550331 SNAP47Q5SQN1 464 aa7.52□□□□□ -1.21
NEK3-201ENST00000550331 PDPK2PQ6A1A2 396 aa7.52□□□□□ -1.21
NEK3-201ENST00000550331 HIST2H2BCQ6DN03 193 aa7.52□□□□□ -1.21
NEK3-201ENST00000550331 VSIG1Q86XK7 387 aa7.52□□□□□ -1.21
NEK3-201ENST00000550331 PLXDC1Q8IUK5 500 aa7.52□□□□□ -1.21
NEK3-201ENST00000550331 GOLGA6L1Q8N7Z2 621 aa7.52□□□□□ -1.21
NEK3-201ENST00000550331 CCNYQ8ND76 341 aa7.52□□□□□ -1.21
NEK3-201ENST00000550331 NCSTNQ92542 709 aa7.52□□□□□ -1.21
NEK3-201ENST00000550331 ZSCAN5AQ9BUG6 496 aa7.52□□□□□ -1.21
NEK3-201ENST00000550331 ZFYVE1Q9HBF4 777 aa7.52□□□□□ -1.21
NEK3-201ENST00000550331 MAGEE1Q9HCI5 957 aa7.52□□□□□ -1.21
NEK3-201ENST00000550331 TRIM39Q9HCM9 518 aa7.52□□□□□ -1.21
NEK3-201ENST00000550331 SIDT1Q9NXL6 827 aaKnown RBP7.52□□□□□ -1.21
NEK3-201ENST00000550331 CTTNBP2NLQ9P2B4 639 aa7.52□□□□□ -1.21
NEK3-201ENST00000550331 ATXN10Q9UBB4 475 aa7.52□□□□□ -1.21
NEK3-201ENST00000550331 ANAPC2Q9UJX6 822 aa7.52□□□□□ -1.21
NEK3-201ENST00000550331 LUC7L2Q9Y383 392 aaKnown RBP7.52□□□□□ -1.21
NEK3-201ENST00000550331 ITPR2Q14571 2701 aa7.51□□□□□ -1.21
NEK3-201ENST00000550331 CHUKO15111 745 aa7.51□□□□□ -1.21
NEK3-201ENST00000550331 SNX2O60749 519 aa7.51□□□□□ -1.21
NEK3-201ENST00000550331 SLC25A14O95258 325 aaPredicted RBP7.51□□□□□ -1.21
NEK3-201ENST00000550331 DLGAP3O95886 979 aa7.51□□□□□ -1.21
NEK3-201ENST00000550331 JCHAINP01591 159 aa7.51□□□□□ -1.21
NEK3-201ENST00000550331 C9P02748 559 aa7.51□□□□□ -1.21
NEK3-201ENST00000550331 GYPCP04921 128 aa7.51□□□□□ -1.21
NEK3-201ENST00000550331 H2AFZP0C0S5 128 aa7.51□□□□□ -1.21
NEK3-201ENST00000550331 ZNF8P17098 575 aaPredicted RBP7.51□□□□□ -1.21
NEK3-201ENST00000550331 HNRNPH3P31942 346 aaKnown RBP7.51□□□□□ -1.21
NEK3-201ENST00000550331 CASRP41180 1078 aa7.51□□□□□ -1.21
NEK3-201ENST00000550331 STAT5AP42229 794 aa7.51□□□□□ -1.21
NEK3-201ENST00000550331 PTGIRP43119 386 aa7.51□□□□□ -1.21
NEK3-201ENST00000550331 MAPK9P45984 424 aa7.51□□□□□ -1.21
NEK3-201ENST00000550331 RNF144AP50876 292 aaPredicted RBP7.51□□□□□ -1.21
NEK3-201ENST00000550331 UBASH3AP57075 661 aa7.51□□□□□ -1.21
NEK3-201ENST00000550331 TAS2R40P59535 323 aa7.51□□□□□ -1.21
NEK3-201ENST00000550331 SLC10A2Q12908 348 aaPredicted RBP7.51□□□□□ -1.21
NEK3-201ENST00000550331 ZBTB17Q13105 803 aa7.51□□□□□ -1.21
NEK3-201ENST00000550331 GALNT3Q14435 633 aa7.51□□□□□ -1.21
NEK3-201ENST00000550331 SLC14A2Q15849 920 aa7.51□□□□□ -1.21
NEK3-201ENST00000550331 ZFYVE27Q5T4F4 411 aa7.51□□□□□ -1.21
NEK3-201ENST00000550331 CAVIN1Q6NZI2 390 aaKnown RBP7.51□□□□□ -1.21
NEK3-201ENST00000550331 H2AFVQ71UI9 128 aa7.51□□□□□ -1.21
NEK3-201ENST00000550331 TIPARPQ7Z3E1 657 aaKnown RBP7.51□□□□□ -1.21
NEK3-201ENST00000550331 KDELC2Q7Z4H8 507 aa7.51□□□□□ -1.21
NEK3-201ENST00000550331 TMC3Q7Z5M5 1100 aa7.51□□□□□ -1.21
NEK3-201ENST00000550331 CPNE8Q86YQ8 564 aa7.51□□□□□ -1.21
NEK3-201ENST00000550331 TRAM1L1Q8N609 369 aa7.51□□□□□ -1.21
NEK3-201ENST00000550331 ESX1Q8N693 406 aa7.51□□□□□ -1.21
NEK3-201ENST00000550331 PLD5Q8N7P1 536 aa7.51□□□□□ -1.21
NEK3-201ENST00000550331 CNTD1Q8N815 330 aa7.51□□□□□ -1.21
NEK3-201ENST00000550331 CPLX3Q8WVH0 158 aa7.51□□□□□ -1.21
NEK3-201ENST00000550331 CTNNBL1Q8WYA6 563 aaPredicted RBP7.51□□□□□ -1.21
NEK3-201ENST00000550331 STARD8Q92502 1023 aa7.51□□□□□ -1.21
NEK3-201ENST00000550331 TADA1Q96BN2 335 aa7.51□□□□□ -1.21
NEK3-201ENST00000550331 EID2BQ96D98 161 aa7.51□□□□□ -1.21
NEK3-201ENST00000550331 IMP4Q96G21 291 aaKnown RBP7.51□□□□□ -1.21
NEK3-201ENST00000550331 RNF157Q96PX1 679 aa7.51□□□□□ -1.21
NEK3-201ENST00000550331 PLEKHG4BQ96PX9 1271 aa7.51□□□□□ -1.21
NEK3-201ENST00000550331 TRIB3Q96RU7 358 aa7.51□□□□□ -1.21
NEK3-201ENST00000550331 SRPK1Q96SB4 655 aaKnown RBP7.51□□□□□ -1.21
NEK3-201ENST00000550331 CTRCQ99895 268 aa7.51□□□□□ -1.21
NEK3-201ENST00000550331 TIMM29Q9BSF4 260 aa7.51□□□□□ -1.21
NEK3-201ENST00000550331 TBC1D10AQ9BXI6 508 aa7.51□□□□□ -1.21
NEK3-201ENST00000550331 OR2AG1Q9H205 316 aa7.51□□□□□ -1.21
NEK3-201ENST00000550331 PRDM8Q9NQV8 689 aa7.51□□□□□ -1.21
NEK3-201ENST00000550331 POT1Q9NUX5 634 aa7.51□□□□□ -1.21
NEK3-201ENST00000550331 KLHL3Q9UH77 587 aa7.51□□□□□ -1.21
NEK3-201ENST00000550331 ZNF711Q9Y462 761 aa7.51□□□□□ -1.21
NEK3-201ENST00000550331 ANKRD17O75179 2603 aaKnown RBP7.51□□□□□ -1.21
NEK3-201ENST00000550331 DOPEY1Q5JWR5 2465 aa7.51□□□□□ -1.21
NEK3-201ENST00000550331 CENPEQ02224 2701 aa7.5□□□□□ -1.21
Retrieved 100 of 20,778 RNA–protein pairs in 26.9 ms