RNA–Protein interactions for RNA: ENST00000547486.1

CPSF6-204, Transcript of cleavage and polyadenylation specific factor 6, humanhuman

TSL 2

Gene CPSF6, Length 872 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF6-204ENST00000547486 VAT1Q99536 393 aa13.12□□□□□ -0.31
CPSF6-204ENST00000547486 ARHGAP9Q9BRR9 750 aa13.12□□□□□ -0.31
CPSF6-204ENST00000547486 EPB41L1Q9H4G0 881 aa13.12□□□□□ -0.31
CPSF6-204ENST00000547486 WASH6PQ9NQA3 447 aa13.12□□□□□ -0.31
CPSF6-204ENST00000547486 STARD5Q9NSY2 213 aa13.12□□□□□ -0.31
CPSF6-204ENST00000547486 SIDT1Q9NXL6 827 aaKnown RBP13.12□□□□□ -0.31
CPSF6-204ENST00000547486 RSPH14Q9UHP6 348 aa13.12□□□□□ -0.31
CPSF6-204ENST00000547486 MN1Q10571 1320 aaPredicted RBP13.12□□□□□ -0.31
CPSF6-204ENST00000547486 LOC101059948A0A1B0GTJ6 334 aa13.11□□□□□ -0.31
CPSF6-204ENST00000547486 SOWAHDA6NJG2 315 aa13.11□□□□□ -0.31
CPSF6-204ENST00000547486 HACD1B0YJ81 288 aa13.11□□□□□ -0.31
CPSF6-204ENST00000547486 CAPN5O15484 640 aaPredicted RBP13.11□□□□□ -0.31
CPSF6-204ENST00000547486 NKX2-8O15522 239 aa13.11□□□□□ -0.31
CPSF6-204ENST00000547486 KIF1CO43896 1103 aaKnown RBP13.11□□□□□ -0.31
CPSF6-204ENST00000547486 POP7O75817 140 aaKnown RBP13.11□□□□□ -0.31
CPSF6-204ENST00000547486 IDSP22304 550 aa13.11□□□□□ -0.31
CPSF6-204ENST00000547486 SPAM1P38567 509 aa13.11□□□□□ -0.31
CPSF6-204ENST00000547486 NFKB2Q00653 900 aa13.11□□□□□ -0.31
CPSF6-204ENST00000547486 MPP3Q13368 585 aa13.11□□□□□ -0.31
CPSF6-204ENST00000547486 XRCC4Q13426 336 aa13.11□□□□□ -0.31
CPSF6-204ENST00000547486 OLIG2Q13516 323 aa13.11□□□□□ -0.31
CPSF6-204ENST00000547486 GPR18Q14330 331 aa13.11□□□□□ -0.31
CPSF6-204ENST00000547486 SPA17Q15506 151 aa13.11□□□□□ -0.31
CPSF6-204ENST00000547486 PPP2R5EQ16537 467 aa13.11□□□□□ -0.31
CPSF6-204ENST00000547486 XKR5Q6UX68 686 aa13.11□□□□□ -0.31
CPSF6-204ENST00000547486 CEACAM20Q6UY09 585 aa13.11□□□□□ -0.31
CPSF6-204ENST00000547486 FAM83HQ6ZRV2 1179 aaPredicted RBP13.11□□□□□ -0.31
CPSF6-204ENST00000547486 GLT6D1Q7Z4J2 308 aa13.11□□□□□ -0.31
CPSF6-204ENST00000547486 DAAM2Q86T65 1068 aa13.11□□□□□ -0.31
CPSF6-204ENST00000547486 PLXDC1Q8IUK5 500 aa13.11□□□□□ -0.31
CPSF6-204ENST00000547486 TRAPPC5Q8IUR0 188 aa13.11□□□□□ -0.31
CPSF6-204ENST00000547486 TRIM48Q8IWZ4 208 aa13.11□□□□□ -0.31
CPSF6-204ENST00000547486 AVL9Q8NBF6 648 aa13.11□□□□□ -0.31
CPSF6-204ENST00000547486 BRSK1Q8TDC3 778 aa13.11□□□□□ -0.31
CPSF6-204ENST00000547486 RSC1A1Q92681 617 aa13.11□□□□□ -0.31
CPSF6-204ENST00000547486 RBM41Q96IZ5 413 aaKnown RBP13.11□□□□□ -0.31
CPSF6-204ENST00000547486 TEFMQ96QE5 360 aaKnown RBP13.11□□□□□ -0.31
CPSF6-204ENST00000547486 FAM118BQ9BPY3 351 aa13.11□□□□□ -0.31
CPSF6-204ENST00000547486 ANP32EQ9BTT0 268 aa13.11□□□□□ -0.31
CPSF6-204ENST00000547486 TRHDEQ9UKU6 1024 aa13.11□□□□□ -0.31
CPSF6-204ENST00000547486 REXO2Q9Y3B8 237 aaKnown RBP13.11□□□□□ -0.31
CPSF6-204ENST00000547486 KCTD3Q9Y597 815 aa13.11□□□□□ -0.31
CPSF6-204ENST00000547486 PCDHA3Q9Y5H8 950 aa13.11□□□□□ -0.31
CPSF6-204ENST00000547486 EPN1Q9Y6I3 576 aaPredicted RBP13.11□□□□□ -0.31
CPSF6-204ENST00000547486 GLYATL1P3A0A0U1RQE8 302 aa13.1□□□□□ -0.31
CPSF6-204ENST00000547486 H7C0C1 242 aa13.1□□□□□ -0.31
CPSF6-204ENST00000547486 APOC4-APOC2K7ER74 178 aa13.1□□□□□ -0.31
CPSF6-204ENST00000547486 POLR1CO15160 346 aaPredicted RBP13.1□□□□□ -0.31
CPSF6-204ENST00000547486 SLC28A2O43868 658 aa13.1□□□□□ -0.31
CPSF6-204ENST00000547486 STK17BO94768 372 aa13.1□□□□□ -0.31
CPSF6-204ENST00000547486 APOC2P02655 101 aa13.1□□□□□ -0.31
CPSF6-204ENST00000547486 ANKRD34CP0C6C1 535 aa13.1□□□□□ -0.31
CPSF6-204ENST00000547486 ZNF28P17035 718 aa13.1□□□□□ -0.31
CPSF6-204ENST00000547486 AMD1P17707 334 aa13.1□□□□□ -0.31
CPSF6-204ENST00000547486 HLA-DPA1P20036 260 aa13.1□□□□□ -0.31
CPSF6-204ENST00000547486 MAP4P27816 1152 aaKnown RBP13.1□□□□□ -0.31
CPSF6-204ENST00000547486 CTNNA1P35221 906 aaKnown RBP13.1□□□□□ -0.31
CPSF6-204ENST00000547486 ATP5OP48047 213 aa13.1□□□□□ -0.31
CPSF6-204ENST00000547486 SEPHS1P49903 392 aa13.1□□□□□ -0.31
CPSF6-204ENST00000547486 SH3BP2P78314 561 aa13.1□□□□□ -0.31
CPSF6-204ENST00000547486 MSLNQ13421 630 aaPredicted RBP13.1□□□□□ -0.31
CPSF6-204ENST00000547486 GPRC6AQ5T6X5 926 aa13.1□□□□□ -0.31
CPSF6-204ENST00000547486 AADACL2Q6P093 401 aa13.1□□□□□ -0.31
CPSF6-204ENST00000547486 TMEM220Q6QAJ8 160 aa13.1□□□□□ -0.31
CPSF6-204ENST00000547486 RANBP10Q6VN20 620 aa13.1□□□□□ -0.31
CPSF6-204ENST00000547486 NLGN4XQ8N0W4 816 aa13.1□□□□□ -0.31
CPSF6-204ENST00000547486 NLGN4YQ8NFZ3 816 aaPredicted RBP13.1□□□□□ -0.31
CPSF6-204ENST00000547486 NAT14Q8WUY8 206 aa13.1□□□□□ -0.31
CPSF6-204ENST00000547486 TTC25Q96NG3 672 aa13.1□□□□□ -0.31
CPSF6-204ENST00000547486 APOL2Q9BQE5 337 aa13.1□□□□□ -0.31
CPSF6-204ENST00000547486 ZPBPQ9BS86 351 aa13.1□□□□□ -0.31
CPSF6-204ENST00000547486 FICDQ9BVA6 458 aa13.1□□□□□ -0.31
CPSF6-204ENST00000547486 LACRTQ9GZZ8 138 aa13.1□□□□□ -0.31
CPSF6-204ENST00000547486 GBA3Q9H227 469 aa13.1□□□□□ -0.31
CPSF6-204ENST00000547486 POT1Q9NUX5 634 aa13.1□□□□□ -0.31
CPSF6-204ENST00000547486 HACD3Q9P035 362 aa13.1□□□□□ -0.31
CPSF6-204ENST00000547486 IL17BQ9UHF5 180 aa13.1□□□□□ -0.31
CPSF6-204ENST00000547486 SBDSQ9Y3A5 250 aaKnown RBP eCLIP13.1□□□□□ -0.31
CPSF6-204ENST00000547486 TMEM184BQ9Y519 407 aaPredicted RBP13.1□□□□□ -0.31
CPSF6-204ENST00000547486 ARL5AQ9Y689 179 aa13.1□□□□□ -0.31
CPSF6-204ENST00000547486 ZFC3H1O60293 1989 aaKnown RBP13.1□□□□□ -0.31
CPSF6-204ENST00000547486 COL6A6A6NMZ7 2263 aa13.09□□□□□ -0.31
CPSF6-204ENST00000547486 OR2AG2A6NM03 316 aa13.09□□□□□ -0.31
CPSF6-204ENST00000547486 NDUFA10O95299 355 aa13.09□□□□□ -0.31
CPSF6-204ENST00000547486 DLGAP3O95886 979 aa13.09□□□□□ -0.31
CPSF6-204ENST00000547486 ADRA1AP35348 466 aa13.09□□□□□ -0.31
CPSF6-204ENST00000547486 CYLC1P35663 651 aaPredicted RBP13.09□□□□□ -0.31
CPSF6-204ENST00000547486 COPS2P61201 443 aa13.09□□□□□ -0.31
CPSF6-204ENST00000547486 PPP1CAP62136 330 aa13.09□□□□□ -0.31
CPSF6-204ENST00000547486 OTUD4Q01804 1114 aaKnown RBP13.09□□□□□ -0.31
CPSF6-204ENST00000547486 FOXM1Q08050 763 aa13.09□□□□□ -0.31
CPSF6-204ENST00000547486 DMPKQ09013 629 aa13.09□□□□□ -0.31
CPSF6-204ENST00000547486 GTF2H3Q13889 308 aa13.09□□□□□ -0.31
CPSF6-204ENST00000547486 RPE65Q16518 533 aa13.09□□□□□ -0.31
CPSF6-204ENST00000547486 ZDHHC20Q5W0Z9 365 aa13.09□□□□□ -0.31
CPSF6-204ENST00000547486 RAD9BQ6WBX8 426 aa13.09□□□□□ -0.31
CPSF6-204ENST00000547486 AMZ2Q86W34 360 aa13.09□□□□□ -0.31
CPSF6-204ENST00000547486 BEND7Q8N7W2 519 aaPredicted RBP13.09□□□□□ -0.31
CPSF6-204ENST00000547486 DDHD1Q8NEL9 900 aa13.09□□□□□ -0.31
CPSF6-204ENST00000547486 ACTL9Q8TC94 416 aa13.09□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 32.4 ms