RNA–Protein interactions for RNA: ENST00000544750.1

USP28-212, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 5

Gene USP28, Length 542 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-212ENST00000544750 OTOGQ6ZRI0 2925 aa12.59□□□□□ -0.39
USP28-212ENST00000544750 DPM1O60762 260 aa12.59□□□□□ -0.39
USP28-212ENST00000544750 CBX6O95503 412 aa12.59□□□□□ -0.39
USP28-212ENST00000544750 GZMAP12544 262 aa12.59□□□□□ -0.39
USP28-212ENST00000544750 SKILP12757 684 aa12.59□□□□□ -0.39
USP28-212ENST00000544750 ZNF7P17097 686 aaPredicted RBP12.59□□□□□ -0.39
USP28-212ENST00000544750 POU3F2P20265 443 aaPredicted RBP12.59□□□□□ -0.39
USP28-212ENST00000544750 ITKQ08881 620 aa12.59□□□□□ -0.39
USP28-212ENST00000544750 TUBB3Q13509 450 aa12.59□□□□□ -0.39
USP28-212ENST00000544750 QPCTQ16769 361 aa12.59□□□□□ -0.39
USP28-212ENST00000544750 ANKRD20A8PQ5CZ79 823 aa12.59□□□□□ -0.39
USP28-212ENST00000544750 AGAP9Q5VTM2 703 aa12.59□□□□□ -0.39
USP28-212ENST00000544750 SLC6A19Q695T7 634 aa12.59□□□□□ -0.39
USP28-212ENST00000544750 CERS6Q6ZMG9 384 aa12.59□□□□□ -0.39
USP28-212ENST00000544750 C11orf96Q7Z7L8 435 aa12.59□□□□□ -0.39
USP28-212ENST00000544750 BPHLQ86WA6 291 aaPredicted RBP12.59□□□□□ -0.39
USP28-212ENST00000544750 ZNF547Q8IVP9 402 aa12.59□□□□□ -0.39
USP28-212ENST00000544750 TRIM48Q8IWZ4 208 aa12.59□□□□□ -0.39
USP28-212ENST00000544750 RBM12BQ8IXT5 1001 aaKnown RBP12.59□□□□□ -0.39
USP28-212ENST00000544750 PRR7Q8TB68 274 aa12.59□□□□□ -0.39
USP28-212ENST00000544750 FAM71BQ8TC56 605 aa12.59□□□□□ -0.39
USP28-212ENST00000544750 HSPH1Q92598 858 aa12.59□□□□□ -0.39
USP28-212ENST00000544750 FATE1Q969F0 183 aa12.59□□□□□ -0.39
USP28-212ENST00000544750 ZDHHC12Q96GR4 267 aa12.59□□□□□ -0.39
USP28-212ENST00000544750 TIMM29Q9BSF4 260 aa12.59□□□□□ -0.39
USP28-212ENST00000544750 ACSS2Q9NR19 701 aa12.59□□□□□ -0.39
USP28-212ENST00000544750 STAU2Q9NUL3 570 aaKnown RBP eCLIP12.59□□□□□ -0.39
USP28-212ENST00000544750 LUZP4Q9P127 313 aa12.59□□□□□ -0.39
USP28-212ENST00000544750 NFKBIL1Q9UBC1 381 aaPredicted RBP12.59□□□□□ -0.39
USP28-212ENST00000544750 AMACRQ9UHK6 382 aa12.59□□□□□ -0.39
USP28-212ENST00000544750 CAPN11Q9UMQ6 739 aa12.59□□□□□ -0.39
USP28-212ENST00000544750 FARSAQ9Y285 508 aaKnown RBP12.59□□□□□ -0.39
USP28-212ENST00000544750 PCM1Q15154 2024 aa12.59□□□□□ -0.39
USP28-212ENST00000544750 DOCK10Q96BY6 2186 aa12.59□□□□□ -0.39
USP28-212ENST00000544750 C2CD3Q4AC94 2353 aa12.58□□□□□ -0.4
USP28-212ENST00000544750 OR52A4PA6NMU1 304 aa12.58□□□□□ -0.4
USP28-212ENST00000544750 ANKRD66B4E2M5 251 aa12.58□□□□□ -0.4
USP28-212ENST00000544750 KMOO15229 486 aa12.58□□□□□ -0.4
USP28-212ENST00000544750 MATN3O15232 486 aa12.58□□□□□ -0.4
USP28-212ENST00000544750 MFSD11O43934 449 aa12.58□□□□□ -0.4
USP28-212ENST00000544750 SLC25A14O95258 325 aaPredicted RBP12.58□□□□□ -0.4
USP28-212ENST00000544750 JCHAINP01591 159 aa12.58□□□□□ -0.4
USP28-212ENST00000544750 MMP2P08253 660 aa12.58□□□□□ -0.4
USP28-212ENST00000544750 VARSP26640 1264 aaKnown RBP12.58□□□□□ -0.4
USP28-212ENST00000544750 TNFRSF8P28908 595 aa12.58□□□□□ -0.4
USP28-212ENST00000544750 RPS15P62841 145 aaKnown RBP12.58□□□□□ -0.4
USP28-212ENST00000544750 ZBED6P86452 979 aa12.58□□□□□ -0.4
USP28-212ENST00000544750 KLHL30Q0D2K2 578 aa12.58□□□□□ -0.4
USP28-212ENST00000544750 GALNT2Q10471 571 aa12.58□□□□□ -0.4
USP28-212ENST00000544750 KCNAB1Q14722 419 aa12.58□□□□□ -0.4
USP28-212ENST00000544750 INSCQ1MX18 579 aa12.58□□□□□ -0.4
USP28-212ENST00000544750 PLA2G4EQ3MJ16 856 aa12.58□□□□□ -0.4
USP28-212ENST00000544750 C1QL3Q5VWW1 255 aa12.58□□□□□ -0.4
USP28-212ENST00000544750 IZUMO3Q5VZ72 239 aa12.58□□□□□ -0.4
USP28-212ENST00000544750 IRGCQ6NXR0 463 aa12.58□□□□□ -0.4
USP28-212ENST00000544750 CRTC3Q6UUV7 619 aa12.58□□□□□ -0.4
USP28-212ENST00000544750 HPS6Q86YV9 775 aa12.58□□□□□ -0.4
USP28-212ENST00000544750 SIDT2Q8NBJ9 832 aaKnown RBP12.58□□□□□ -0.4
USP28-212ENST00000544750 SLC38A9Q8NBW4 561 aa12.58□□□□□ -0.4
USP28-212ENST00000544750 GPR26Q8NDV2 337 aa12.58□□□□□ -0.4
USP28-212ENST00000544750 LPCAT1Q8NF37 534 aa12.58□□□□□ -0.4
USP28-212ENST00000544750 FDCSPQ8NFU4 85 aa12.58□□□□□ -0.4
USP28-212ENST00000544750 TEKT4Q8WW24 435 aa12.58□□□□□ -0.4
USP28-212ENST00000544750 UBXN4Q92575 508 aa12.58□□□□□ -0.4
USP28-212ENST00000544750 SYN2Q92777 582 aaPredicted RBP12.58□□□□□ -0.4
USP28-212ENST00000544750 PNPLA2Q96AD5 504 aa12.58□□□□□ -0.4
USP28-212ENST00000544750 C19orf60Q96EN9 201 aa12.58□□□□□ -0.4
USP28-212ENST00000544750 NUDT9Q9BW91 350 aa12.58□□□□□ -0.4
USP28-212ENST00000544750 SLC29A3Q9BZD2 475 aa12.58□□□□□ -0.4
USP28-212ENST00000544750 NUP210LQ5VU65 1888 aa12.57□□□□□ -0.4
USP28-212ENST00000544750 SSU72P8A0A1W2PR75 194 aa12.57□□□□□ -0.4
USP28-212ENST00000544750 PDZK1P1A8MUH7 402 aa12.57□□□□□ -0.4
USP28-212ENST00000544750 MTA2O94776 668 aa12.57□□□□□ -0.4
USP28-212ENST00000544750 FTLP02792 175 aaPredicted RBP12.57□□□□□ -0.4
USP28-212ENST00000544750 HLA-DQB2P05538 268 aa12.57□□□□□ -0.4
USP28-212ENST00000544750 EBLN1P0CF75 366 aa12.57□□□□□ -0.4
USP28-212ENST00000544750 RPL10P27635 214 aaKnown RBP12.57□□□□□ -0.4
USP28-212ENST00000544750 DCDC1P59894 354 aa12.57□□□□□ -0.4
USP28-212ENST00000544750 SLC25A11Q02978 314 aaKnown RBP12.57□□□□□ -0.4
USP28-212ENST00000544750 ACY1Q03154 408 aa12.57□□□□□ -0.4
USP28-212ENST00000544750 GPS2Q13227 327 aa12.57□□□□□ -0.4
USP28-212ENST00000544750 PAFAH1B3Q15102 231 aaKnown RBP12.57□□□□□ -0.4
USP28-212ENST00000544750 SEPT7Q16181 437 aaKnown RBP12.57□□□□□ -0.4
USP28-212ENST00000544750 KHDC1Q4VXA5 237 aaKnown RBP12.57□□□□□ -0.4
USP28-212ENST00000544750 TDRD12Q587J7 1177 aaKnown RBP12.57□□□□□ -0.4
USP28-212ENST00000544750 ZNF569Q5MCW4 686 aa12.57□□□□□ -0.4
USP28-212ENST00000544750 PDPK2PQ6A1A2 396 aa12.57□□□□□ -0.4
USP28-212ENST00000544750 LRRTM4Q86VH4 590 aa12.57□□□□□ -0.4
USP28-212ENST00000544750 D2HGDHQ8N465 521 aa12.57□□□□□ -0.4
USP28-212ENST00000544750 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP12.57□□□□□ -0.4
USP28-212ENST00000544750 TRAM1L1Q8N609 369 aa12.57□□□□□ -0.4
USP28-212ENST00000544750 CCHCR1Q8TD31 782 aa12.57□□□□□ -0.4
USP28-212ENST00000544750 CPLX3Q8WVH0 158 aa12.57□□□□□ -0.4
USP28-212ENST00000544750 GLYATL1Q969I3 302 aa12.57□□□□□ -0.4
USP28-212ENST00000544750 IQCDQ96DY2 449 aa12.57□□□□□ -0.4
USP28-212ENST00000544750 ZNF514Q96K75 400 aaPredicted RBP12.57□□□□□ -0.4
USP28-212ENST00000544750 TSGA13Q96PP4 275 aa12.57□□□□□ -0.4
USP28-212ENST00000544750 SMAD5Q99717 465 aaKnown RBP12.57□□□□□ -0.4
USP28-212ENST00000544750 MAP3K3Q99759 626 aa12.57□□□□□ -0.4
USP28-212ENST00000544750 ZSCAN5AQ9BUG6 496 aa12.57□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 21.5 ms