RNA–Protein interactions for RNA: ENST00000542663.1

CLSTN3-214, Transcript of calsyntenin 3, humanhuman

TSL 2

Gene CLSTN3, Length 390 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-214ENST00000542663 NUP85Q9BW27 656 aa17.48■□□□□ 0.39
CLSTN3-214ENST00000542663 GPR87Q9BY21 358 aa17.48■□□□□ 0.39
CLSTN3-214ENST00000542663 PDE7BQ9NP56 450 aa17.48■□□□□ 0.39
CLSTN3-214ENST00000542663 WASH6PQ9NQA3 447 aa17.48■□□□□ 0.39
CLSTN3-214ENST00000542663 RTN4Q9NQC3 1192 aaKnown RBP17.48■□□□□ 0.39
CLSTN3-214ENST00000542663 RARRES3Q9UL19 164 aa17.48■□□□□ 0.39
CLSTN3-214ENST00000542663 TMPRSS11EQ9UL52 423 aa17.48■□□□□ 0.39
CLSTN3-214ENST00000542663 SHOC2Q9UQ13 582 aa17.48■□□□□ 0.39
CLSTN3-214ENST00000542663 ARGFXA6NJG6 315 aa17.47■□□□□ 0.39
CLSTN3-214ENST00000542663 TCP11X1B4DZS4 312 aa17.47■□□□□ 0.39
CLSTN3-214ENST00000542663 PIRTP0C851 137 aa17.47■□□□□ 0.39
CLSTN3-214ENST00000542663 CCL11P51671 97 aa17.47■□□□□ 0.39
CLSTN3-214ENST00000542663 INPP5JQ15735 1006 aaPredicted RBP17.47■□□□□ 0.39
CLSTN3-214ENST00000542663 CCDC183Q5T5S1 534 aa17.47■□□□□ 0.39
CLSTN3-214ENST00000542663 PDPK2PQ6A1A2 396 aa17.47■□□□□ 0.39
CLSTN3-214ENST00000542663 CYB5D1Q6P9G0 228 aa17.47■□□□□ 0.39
CLSTN3-214ENST00000542663 TMC3Q7Z5M5 1100 aa17.47■□□□□ 0.39
CLSTN3-214ENST00000542663 SYVN1Q86TM6 617 aa17.47■□□□□ 0.39
CLSTN3-214ENST00000542663 CPNE8Q86YQ8 564 aa17.47■□□□□ 0.39
CLSTN3-214ENST00000542663 CNTD1Q8N815 330 aa17.47■□□□□ 0.39
CLSTN3-214ENST00000542663 Q8NA96 180 aa17.47■□□□□ 0.39
CLSTN3-214ENST00000542663 SIDT2Q8NBJ9 832 aaKnown RBP17.47■□□□□ 0.39
CLSTN3-214ENST00000542663 GPR150Q8NGU9 434 aa17.47■□□□□ 0.39
CLSTN3-214ENST00000542663 CXorf40BQ96DE9 158 aa17.47■□□□□ 0.39
CLSTN3-214ENST00000542663 THAP2Q9H0W7 228 aa17.47■□□□□ 0.39
CLSTN3-214ENST00000542663 ING2Q9H160 280 aa17.47■□□□□ 0.39
CLSTN3-214ENST00000542663 ANO10Q9NW15 660 aa17.47■□□□□ 0.39
CLSTN3-214ENST00000542663 TRIM10Q9UDY6 481 aa17.47■□□□□ 0.39
CLSTN3-214ENST00000542663 IP6K2Q9UHH9 426 aa17.47■□□□□ 0.39
CLSTN3-214ENST00000542663 ANAPC7Q9UJX3 599 aa17.47■□□□□ 0.39
CLSTN3-214ENST00000542663 DOPEY1Q5JWR5 2465 aa17.47■□□□□ 0.39
CLSTN3-214ENST00000542663 EBLN1P0CF75 366 aa17.46■□□□□ 0.39
CLSTN3-214ENST00000542663 IDSP22304 550 aa17.46■□□□□ 0.39
CLSTN3-214ENST00000542663 COL8A1P27658 744 aa17.46■□□□□ 0.39
CLSTN3-214ENST00000542663 GBE1Q04446 702 aa17.46■□□□□ 0.39
CLSTN3-214ENST00000542663 ZBTB17Q13105 803 aa17.46■□□□□ 0.39
CLSTN3-214ENST00000542663 MRPL49Q13405 166 aaKnown RBP17.46■□□□□ 0.39
CLSTN3-214ENST00000542663 EIF2S3LQ2VIR3 472 aaKnown RBP17.46■□□□□ 0.39
CLSTN3-214ENST00000542663 ZNF787Q6DD87 383 aa17.46■□□□□ 0.39
CLSTN3-214ENST00000542663 ZNF517Q6ZMY9 492 aaPredicted RBP17.46■□□□□ 0.39
CLSTN3-214ENST00000542663 PQLC3Q8N755 202 aa17.46■□□□□ 0.39
CLSTN3-214ENST00000542663 ADAMTS17Q8TE56 1095 aa17.46■□□□□ 0.39
CLSTN3-214ENST00000542663 UBXN4Q92575 508 aa17.46■□□□□ 0.39
CLSTN3-214ENST00000542663 HDAC11Q96DB2 347 aa17.46■□□□□ 0.39
CLSTN3-214ENST00000542663 ADGRE3Q9BY15 652 aa17.46■□□□□ 0.39
CLSTN3-214ENST00000542663 CASS4Q9NQ75 786 aa17.46■□□□□ 0.39
CLSTN3-214ENST00000542663 ACSS2Q9NR19 701 aa17.46■□□□□ 0.39
CLSTN3-214ENST00000542663 HAUS2Q9NVX0 235 aa17.46■□□□□ 0.39
CLSTN3-214ENST00000542663 NUP210LQ5VU65 1888 aa17.46■□□□□ 0.38
CLSTN3-214ENST00000542663 KCNK1O00180 336 aa17.45■□□□□ 0.38
CLSTN3-214ENST00000542663 VEGFDO43915 354 aa17.45■□□□□ 0.38
CLSTN3-214ENST00000542663 CEACAM4O75871 244 aa17.45■□□□□ 0.38
CLSTN3-214ENST00000542663 CDK14O94921 469 aa17.45■□□□□ 0.38
CLSTN3-214ENST00000542663 JCHAINP01591 159 aa17.45■□□□□ 0.38
CLSTN3-214ENST00000542663 BPIP17213 487 aa17.45■□□□□ 0.38
CLSTN3-214ENST00000542663 FECHP22830 423 aa17.45■□□□□ 0.38
CLSTN3-214ENST00000542663 PTGIRP43119 386 aa17.45■□□□□ 0.38
CLSTN3-214ENST00000542663 STX1AQ16623 288 aa17.45■□□□□ 0.38
CLSTN3-214ENST00000542663 JMJD6Q6NYC1 403 aaPredicted RBP17.45■□□□□ 0.38
CLSTN3-214ENST00000542663 SLC38A9Q8NBW4 561 aa17.45■□□□□ 0.38
CLSTN3-214ENST00000542663 FAF2Q96CS3 445 aa17.45■□□□□ 0.38
CLSTN3-214ENST00000542663 ZNF514Q96K75 400 aaPredicted RBP17.45■□□□□ 0.38
CLSTN3-214ENST00000542663 MAP3K3Q99759 626 aa17.45■□□□□ 0.38
CLSTN3-214ENST00000542663 ZNF670Q9BS34 389 aa17.45■□□□□ 0.38
CLSTN3-214ENST00000542663 MAGEE1Q9HCI5 957 aa17.45■□□□□ 0.38
CLSTN3-214ENST00000542663 FGF21Q9NSA1 209 aa17.45■□□□□ 0.38
CLSTN3-214ENST00000542663 LUZP4Q9P127 313 aa17.45■□□□□ 0.38
CLSTN3-214ENST00000542663 ZNF711Q9Y462 761 aa17.45■□□□□ 0.38
CLSTN3-214ENST00000542663 TEP1Q99973 2627 aaKnown RBP17.45■□□□□ 0.38
CLSTN3-214ENST00000542663 ENO4A6NNW6 628 aa17.44■□□□□ 0.38
CLSTN3-214ENST00000542663 CLDN1O95832 211 aa17.44■□□□□ 0.38
CLSTN3-214ENST00000542663 DDAH2O95865 285 aa17.44■□□□□ 0.38
CLSTN3-214ENST00000542663 SLC4A1P02730 911 aa17.44■□□□□ 0.38
CLSTN3-214ENST00000542663 LPOP22079 712 aaPredicted RBP17.44■□□□□ 0.38
CLSTN3-214ENST00000542663 GJC1P36383 396 aa17.44■□□□□ 0.38
CLSTN3-214ENST00000542663 RPS15P62841 145 aaKnown RBP17.44■□□□□ 0.38
CLSTN3-214ENST00000542663 GPS2Q13227 327 aa17.44■□□□□ 0.38
CLSTN3-214ENST00000542663 CHRNA6Q15825 494 aa17.44■□□□□ 0.38
CLSTN3-214ENST00000542663 HGSNATQ68CP4 663 aa17.44■□□□□ 0.38
CLSTN3-214ENST00000542663 SASS6Q6UVJ0 657 aa17.44■□□□□ 0.38
CLSTN3-214ENST00000542663 BPHLQ86WA6 291 aaPredicted RBP17.44■□□□□ 0.38
CLSTN3-214ENST00000542663 VPS35Q96QK1 796 aa17.44■□□□□ 0.38
CLSTN3-214ENST00000542663 RAD18Q9NS91 495 aa17.44■□□□□ 0.38
CLSTN3-214ENST00000542663 FARSAQ9Y285 508 aaKnown RBP17.44■□□□□ 0.38
CLSTN3-214ENST00000542663 WIPF3A6NGB9 483 aa17.43■□□□□ 0.38
CLSTN3-214ENST00000542663 AURKAO14965 403 aa17.43■□□□□ 0.38
CLSTN3-214ENST00000542663 CPNE3O75131 537 aaKnown RBP17.43■□□□□ 0.38
CLSTN3-214ENST00000542663 CYP1A2P05177 515 aa17.43■□□□□ 0.38
CLSTN3-214ENST00000542663 DCTP40126 519 aa17.43■□□□□ 0.38
CLSTN3-214ENST00000542663 SSR1P43307 286 aaKnown RBP17.43■□□□□ 0.38
CLSTN3-214ENST00000542663 IFI35P80217 286 aaPredicted RBP17.43■□□□□ 0.38
CLSTN3-214ENST00000542663 ACY1Q03154 408 aa17.43■□□□□ 0.38
CLSTN3-214ENST00000542663 IZUMO3Q5VZ72 239 aa17.43■□□□□ 0.38
CLSTN3-214ENST00000542663 LCN10Q6JVE6 187 aa17.43■□□□□ 0.38
CLSTN3-214ENST00000542663 TRAPPC5Q8IUR0 188 aa17.43■□□□□ 0.38
CLSTN3-214ENST00000542663 D2HGDHQ8N465 521 aa17.43■□□□□ 0.38
CLSTN3-214ENST00000542663 CCNYQ8ND76 341 aa17.43■□□□□ 0.38
CLSTN3-214ENST00000542663 TCTN2Q96GX1 697 aa17.43■□□□□ 0.38
CLSTN3-214ENST00000542663 NUDT9Q9BW91 350 aa17.43■□□□□ 0.38
CLSTN3-214ENST00000542663 CEP41Q9BYV8 373 aa17.43■□□□□ 0.38
Retrieved 100 of 20,778 RNA–protein pairs in 32.7 ms