RNA–Protein interactions for RNA: ENST00000540438.5

USP28-208, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 2

Gene USP28, Length 3,015 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-208ENST00000540438 TRIM60Q495X7 471 aa16.71■□□□□ 0.27
USP28-208ENST00000540438 ANKRD34AQ69YU3 496 aa16.71■□□□□ 0.27
USP28-208ENST00000540438 SLC22A17Q8WUG5 538 aa16.71■□□□□ 0.27
USP28-208ENST00000540438 SPATA16Q9BXB7 569 aa16.71■□□□□ 0.27
USP28-208ENST00000540438 SYTL2Q9HCH5 934 aa16.71■□□□□ 0.27
USP28-208ENST00000540438 RNF11Q9Y3C5 154 aa16.71■□□□□ 0.27
USP28-208ENST00000540438 ZNF189O75820 626 aaPredicted RBP16.71■□□□□ 0.27
USP28-208ENST00000540438 TFAP2AP05549 437 aa16.71■□□□□ 0.27
USP28-208ENST00000540438 GSNP06396 782 aa16.71■□□□□ 0.27
USP28-208ENST00000540438 HSPA1AP0DMV8 641 aaKnown RBP16.71■□□□□ 0.27
USP28-208ENST00000540438 HSPA1BP0DMV9 641 aaKnown RBP16.71■□□□□ 0.27
USP28-208ENST00000540438 TUFMP49411 452 aaKnown RBP16.71■□□□□ 0.27
USP28-208ENST00000540438 RHDQ02161 417 aa16.71■□□□□ 0.27
USP28-208ENST00000540438 ACVR1Q04771 509 aa16.71■□□□□ 0.27
USP28-208ENST00000540438 BFSP2Q13515 415 aa16.71■□□□□ 0.27
USP28-208ENST00000540438 PLCL1Q15111 1095 aa16.71■□□□□ 0.27
USP28-208ENST00000540438 KANK2Q63ZY3 851 aa16.71■□□□□ 0.27
USP28-208ENST00000540438 OTOP2Q7RTS6 562 aa16.71■□□□□ 0.27
USP28-208ENST00000540438 OR4F6Q8NGB9 312 aa16.71■□□□□ 0.27
USP28-208ENST00000540438 CYGBQ8WWM9 190 aa16.71■□□□□ 0.27
USP28-208ENST00000540438 BEGAINQ9BUH8 593 aa16.71■□□□□ 0.27
USP28-208ENST00000540438 CFAP97Q9P2B7 532 aa16.71■□□□□ 0.27
USP28-208ENST00000540438 TMEM181Q9P2C4 612 aa16.71■□□□□ 0.27
USP28-208ENST00000540438 LHX3Q9UBR4 397 aa16.71■□□□□ 0.27
USP28-208ENST00000540438 CCL26Q9Y258 94 aa16.71■□□□□ 0.27
USP28-208ENST00000540438 hCG_2014768A0A024R1R8 64 aa16.7■□□□□ 0.26
USP28-208ENST00000540438 LCHNA4D1U4 455 aa16.7■□□□□ 0.26
USP28-208ENST00000540438 ARHGEF7Q14155 803 aa16.7■□□□□ 0.26
USP28-208ENST00000540438 IKBKEQ14164 716 aa16.7■□□□□ 0.26
USP28-208ENST00000540438 TYSND1Q2T9J0 566 aa16.7■□□□□ 0.26
USP28-208ENST00000540438 PYCR3Q53H96 274 aa16.7■□□□□ 0.26
USP28-208ENST00000540438 LCA5Q86VQ0 697 aa16.7■□□□□ 0.26
USP28-208ENST00000540438 ANKRD46Q86W74 232 aa16.7■□□□□ 0.26
USP28-208ENST00000540438 KIAA2013Q8IYS2 634 aa16.7■□□□□ 0.26
USP28-208ENST00000540438 AURKBQ96GD4 344 aaPredicted RBP16.7■□□□□ 0.26
USP28-208ENST00000540438 FBXL20Q96IG2 436 aa16.7■□□□□ 0.26
USP28-208ENST00000540438 FAR2Q96K12 515 aa16.7■□□□□ 0.26
USP28-208ENST00000540438 ADGRE3Q9BY15 652 aa16.7■□□□□ 0.26
USP28-208ENST00000540438 TFB2MQ9H5Q4 396 aaKnown RBP16.7■□□□□ 0.26
USP28-208ENST00000540438 CD300AQ9UGN4 299 aa16.7■□□□□ 0.26
USP28-208ENST00000540438 ZNF711Q9Y462 761 aa16.7■□□□□ 0.26
USP28-208ENST00000540438 CHD5Q8TDI0 1954 aa16.7■□□□□ 0.26
USP28-208ENST00000540438 H3BSA7 217 aa16.7■□□□□ 0.26
USP28-208ENST00000540438 FOXD2O60548 495 aaPredicted RBP16.7■□□□□ 0.26
USP28-208ENST00000540438 KCNK10P57789 538 aa16.7■□□□□ 0.26
USP28-208ENST00000540438 HERC3Q15034 1050 aa16.7■□□□□ 0.26
USP28-208ENST00000540438 CHRNA6Q15825 494 aa16.7■□□□□ 0.26
USP28-208ENST00000540438 CPSF6Q16630 551 aaKnown RBP eCLIP16.7■□□□□ 0.26
USP28-208ENST00000540438 SLC5A9Q2M3M2 681 aa16.7■□□□□ 0.26
USP28-208ENST00000540438 Q6ZSR9 355 aa16.7■□□□□ 0.26
USP28-208ENST00000540438 GPRIN3Q6ZVF9 776 aa16.7■□□□□ 0.26
USP28-208ENST00000540438 SFRP1Q8N474 314 aa16.7■□□□□ 0.26
USP28-208ENST00000540438 FAM47BQ8NA70 645 aa16.7■□□□□ 0.26
USP28-208ENST00000540438 CDC26Q8NHZ8 85 aa16.7■□□□□ 0.26
USP28-208ENST00000540438 ADAMTS19Q8TE59 1207 aa16.7■□□□□ 0.26
USP28-208ENST00000540438 OCEL1Q9H607 264 aa16.7■□□□□ 0.26
USP28-208ENST00000540438 IPPKQ9H8X2 491 aa16.7■□□□□ 0.26
USP28-208ENST00000540438 ELOVL2Q9NXB9 296 aa16.7■□□□□ 0.26
USP28-208ENST00000540438 MTRRQ9UBK8 725 aa16.7■□□□□ 0.26
USP28-208ENST00000540438 SLCO3A1Q9UIG8 710 aa16.7■□□□□ 0.26
USP28-208ENST00000540438 UTS2RQ9UKP6 389 aa16.7■□□□□ 0.26
USP28-208ENST00000540438 KANSL1LA0AUZ9 987 aa16.7■□□□□ 0.26
USP28-208ENST00000540438 ILVBLA1L0T0 632 aa16.7■□□□□ 0.26
USP28-208ENST00000540438 CLGNO14967 610 aa16.7■□□□□ 0.26
USP28-208ENST00000540438 LRATO95237 230 aa16.7■□□□□ 0.26
USP28-208ENST00000540438 PYGLP06737 847 aa16.7■□□□□ 0.26
USP28-208ENST00000540438 SLC2A4P14672 509 aa16.7■□□□□ 0.26
USP28-208ENST00000540438 HNF1BP35680 557 aa16.7■□□□□ 0.26
USP28-208ENST00000540438 INHBCP55103 352 aa16.7■□□□□ 0.26
USP28-208ENST00000540438 OR4D2P58180 307 aa16.7■□□□□ 0.26
USP28-208ENST00000540438 RPL38P63173 70 aaKnown RBP16.7■□□□□ 0.26
USP28-208ENST00000540438 PRKCQQ04759 706 aa16.7■□□□□ 0.26
USP28-208ENST00000540438 HSPA14Q0VDF9 509 aa16.7■□□□□ 0.26
USP28-208ENST00000540438 LAPTM5Q13571 262 aa16.7■□□□□ 0.26
USP28-208ENST00000540438 GTDC1Q4AE62 458 aa16.7■□□□□ 0.26
USP28-208ENST00000540438 SAMD4BQ5PRF9 694 aaKnown RBP16.7■□□□□ 0.26
USP28-208ENST00000540438 ZNF697Q5TEC3 545 aa16.7■□□□□ 0.26
USP28-208ENST00000540438 LRRC43Q8N309 656 aa16.7■□□□□ 0.26
USP28-208ENST00000540438 TTC30BQ8N4P2 665 aa16.7■□□□□ 0.26
USP28-208ENST00000540438 KRTCAP2Q8N6L1 136 aa16.7■□□□□ 0.26
USP28-208ENST00000540438 KLF16Q9BXK1 252 aaPredicted RBP16.7■□□□□ 0.26
USP28-208ENST00000540438 DERL2Q9GZP9 239 aa16.7■□□□□ 0.26
USP28-208ENST00000540438 KLQ9UEF7 1012 aa16.7■□□□□ 0.26
USP28-208ENST00000540438 OAZ3Q9UMX2 235 aa16.7■□□□□ 0.26
USP28-208ENST00000540438 THSD7BQ9C0I4 1608 aa16.69■□□□□ 0.26
USP28-208ENST00000540438 CCDC154A6NI56 674 aa16.69■□□□□ 0.26
USP28-208ENST00000540438 E2F3O00716 465 aa16.69■□□□□ 0.26
USP28-208ENST00000540438 ARPC2O15144 300 aa16.69■□□□□ 0.26
USP28-208ENST00000540438 LIPEQ05469 1076 aa16.69■□□□□ 0.26
USP28-208ENST00000540438 MAPRE2Q15555 327 aa16.69■□□□□ 0.26
USP28-208ENST00000540438 DGKKQ5KSL6 1271 aa16.69■□□□□ 0.26
USP28-208ENST00000540438 C6orf136Q5SQH8 315 aa16.69■□□□□ 0.26
USP28-208ENST00000540438 SLC8B1Q6J4K2 584 aa16.69■□□□□ 0.26
USP28-208ENST00000540438 KRT80Q6KB66 452 aa16.69■□□□□ 0.26
USP28-208ENST00000540438 BEND7Q8N7W2 519 aaPredicted RBP16.69■□□□□ 0.26
USP28-208ENST00000540438 PCYOX1LQ8NBM8 494 aa16.69■□□□□ 0.26
USP28-208ENST00000540438 VPS50Q96JG6 964 aa16.69■□□□□ 0.26
USP28-208ENST00000540438 CWH43Q9H720 699 aa16.69■□□□□ 0.26
USP28-208ENST00000540438 ZDHHC4Q9NPG8 344 aa16.69■□□□□ 0.26
USP28-208ENST00000540438 IL26Q9NPH9 171 aa16.69■□□□□ 0.26
Retrieved 100 of 20,778 RNA–protein pairs in 21.5 ms