RNA–Protein interactions for RNA: ENST00000538933.1

CLSTN3-208, Transcript of calsyntenin 3, humanhuman

TSL 3

Gene CLSTN3, Length 583 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-208ENST00000538933 ENPP7Q6UWV6 458 aa12.39□□□□□ -0.43
CLSTN3-208ENST00000538933 ZNF438Q7Z4V0 828 aa12.39□□□□□ -0.43
CLSTN3-208ENST00000538933 SRLQ86TD4 932 aa12.39□□□□□ -0.43
CLSTN3-208ENST00000538933 CNTD1Q8N815 330 aa12.39□□□□□ -0.43
CLSTN3-208ENST00000538933 OR2AP1Q8NGE2 309 aa12.39□□□□□ -0.43
CLSTN3-208ENST00000538933 FUBP1Q96AE4 644 aaKnown RBP12.39□□□□□ -0.43
CLSTN3-208ENST00000538933 FCRL5Q96RD9 977 aa12.39□□□□□ -0.43
CLSTN3-208ENST00000538933 NUDCD1Q96RS6 583 aa12.39□□□□□ -0.43
CLSTN3-208ENST00000538933 NUDT22Q9BRQ3 303 aa12.39□□□□□ -0.43
CLSTN3-208ENST00000538933 ZNF768Q9H5H4 540 aaKnown RBP12.39□□□□□ -0.43
CLSTN3-208ENST00000538933 ZDHHC6Q9H6R6 413 aa12.39□□□□□ -0.43
CLSTN3-208ENST00000538933 ETNK1Q9HBU6 452 aa12.39□□□□□ -0.43
CLSTN3-208ENST00000538933 PRDM8Q9NQV8 689 aa12.39□□□□□ -0.43
CLSTN3-208ENST00000538933 HECAQ9UBI9 543 aaPredicted RBP12.39□□□□□ -0.43
CLSTN3-208ENST00000538933 LHX3Q9UBR4 397 aa12.39□□□□□ -0.43
CLSTN3-208ENST00000538933 FAM153AQ9UHL3 310 aa12.39□□□□□ -0.43
CLSTN3-208ENST00000538933 DGKBQ9Y6T7 804 aa12.39□□□□□ -0.43
CLSTN3-208ENST00000538933 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP12.38□□□□□ -0.43
CLSTN3-208ENST00000538933 LOC107983988A0A1B0GUW6 1196 aaPredicted RBP12.38□□□□□ -0.43
CLSTN3-208ENST00000538933 WIPF3A6NGB9 483 aa12.38□□□□□ -0.43
CLSTN3-208ENST00000538933 VPS4BO75351 444 aa12.38□□□□□ -0.43
CLSTN3-208ENST00000538933 PMPCBO75439 489 aa12.38□□□□□ -0.43
CLSTN3-208ENST00000538933 TM7SF2O76062 418 aa12.38□□□□□ -0.43
CLSTN3-208ENST00000538933 METTL18O95568 372 aa12.38□□□□□ -0.43
CLSTN3-208ENST00000538933 APRTP07741 180 aa12.38□□□□□ -0.43
CLSTN3-208ENST00000538933 MCM3P25205 808 aa12.38□□□□□ -0.43
CLSTN3-208ENST00000538933 CD1CP29017 333 aa12.38□□□□□ -0.43
CLSTN3-208ENST00000538933 OR1D5P58170 312 aa12.38□□□□□ -0.43
CLSTN3-208ENST00000538933 AP1S1P61966 158 aa12.38□□□□□ -0.43
CLSTN3-208ENST00000538933 NSUN2Q08J23 767 aaKnown RBP eCLIP12.38□□□□□ -0.43
CLSTN3-208ENST00000538933 MPP3Q13368 585 aa12.38□□□□□ -0.43
CLSTN3-208ENST00000538933 ARHGEF7Q14155 803 aa12.38□□□□□ -0.43
CLSTN3-208ENST00000538933 GRM3Q14832 879 aa12.38□□□□□ -0.43
CLSTN3-208ENST00000538933 NFATC4Q14934 902 aa12.38□□□□□ -0.43
CLSTN3-208ENST00000538933 NR1D2Q14995 579 aa12.38□□□□□ -0.43
CLSTN3-208ENST00000538933 PCSK7Q16549 785 aa12.38□□□□□ -0.43
CLSTN3-208ENST00000538933 ERCC6LQ2NKX8 1250 aa12.38□□□□□ -0.43
CLSTN3-208ENST00000538933 WSCD2Q2TBF2 565 aa12.38□□□□□ -0.43
CLSTN3-208ENST00000538933 CRTC2Q53ET0 693 aaPredicted RBP12.38□□□□□ -0.43
CLSTN3-208ENST00000538933 RALGPS1Q5JS13 557 aa12.38□□□□□ -0.43
CLSTN3-208ENST00000538933 ATP1A1-AS1Q5TC04 95 aa12.38□□□□□ -0.43
CLSTN3-208ENST00000538933 TCTN3Q6NUS6 607 aa12.38□□□□□ -0.43
CLSTN3-208ENST00000538933 PPP1R21Q6ZMI0 780 aa12.38□□□□□ -0.43
CLSTN3-208ENST00000538933 MAMDC2Q7Z304 686 aaPredicted RBP12.38□□□□□ -0.43
CLSTN3-208ENST00000538933 C17orf82Q86X59 251 aaPredicted RBP12.38□□□□□ -0.43
CLSTN3-208ENST00000538933 PPIL6Q8IXY8 311 aa12.38□□□□□ -0.43
CLSTN3-208ENST00000538933 PGBD5Q8N414 524 aa12.38□□□□□ -0.43
CLSTN3-208ENST00000538933 TEX19Q8NA77 164 aa12.38□□□□□ -0.43
CLSTN3-208ENST00000538933 FAM46DQ8NEK8 389 aa12.38□□□□□ -0.43
CLSTN3-208ENST00000538933 IPMKQ8NFU5 416 aa12.38□□□□□ -0.43
CLSTN3-208ENST00000538933 OR6K2Q8NGY2 324 aa12.38□□□□□ -0.43
CLSTN3-208ENST00000538933 PDCD6IPQ8WUM4 868 aaKnown RBP12.38□□□□□ -0.43
CLSTN3-208ENST00000538933 IFT81Q8WYA0 676 aa12.38□□□□□ -0.43
CLSTN3-208ENST00000538933 ART4Q93070 314 aa12.38□□□□□ -0.43
CLSTN3-208ENST00000538933 PHF12Q96QT6 1004 aa12.38□□□□□ -0.43
CLSTN3-208ENST00000538933 APOOQ9BUR5 198 aa12.38□□□□□ -0.43
CLSTN3-208ENST00000538933 ATP13A3Q9H7F0 1226 aa12.38□□□□□ -0.43
CLSTN3-208ENST00000538933 UBP1Q9NZI7 540 aa12.38□□□□□ -0.43
CLSTN3-208ENST00000538933 AKAP7Q9P0M2 348 aaPredicted RBP12.38□□□□□ -0.43
CLSTN3-208ENST00000538933 WHRNQ9P202 907 aa12.38□□□□□ -0.43
CLSTN3-208ENST00000538933 ANAPC5Q9UJX4 755 aa12.38□□□□□ -0.43
CLSTN3-208ENST00000538933 VPS4AQ9UN37 437 aa12.38□□□□□ -0.43
CLSTN3-208ENST00000538933 KCNMB2Q9Y691 235 aa12.38□□□□□ -0.43
CLSTN3-208ENST00000538933 NIPBLQ6KC79 2804 aaeCLIP12.38□□□□□ -0.43
CLSTN3-208ENST00000538933 MTORP42345 2549 aa12.37□□□□□ -0.43
CLSTN3-208ENST00000538933 ESYT3A0FGR9 886 aa12.37□□□□□ -0.43
CLSTN3-208ENST00000538933 TTC24A2A3L6 582 aaPredicted RBP12.37□□□□□ -0.43
CLSTN3-208ENST00000538933 ERI2A8K979 691 aaKnown RBP12.37□□□□□ -0.43
CLSTN3-208ENST00000538933 SMAPO00193 183 aa12.37□□□□□ -0.43
CLSTN3-208ENST00000538933 POP4O95707 220 aaKnown RBP12.37□□□□□ -0.43
CLSTN3-208ENST00000538933 DDAH2O95865 285 aa12.37□□□□□ -0.43
CLSTN3-208ENST00000538933 MT-CYBP00156 380 aaPredicted RBP12.37□□□□□ -0.43
CLSTN3-208ENST00000538933 SERPINA4P29622 427 aa12.37□□□□□ -0.43
CLSTN3-208ENST00000538933 CD68P34810 354 aaPredicted RBP12.37□□□□□ -0.43
CLSTN3-208ENST00000538933 RPL21P46778 160 aaKnown RBP12.37□□□□□ -0.43
CLSTN3-208ENST00000538933 RGRP47804 291 aa12.37□□□□□ -0.43
CLSTN3-208ENST00000538933 CSNK1DP48730 415 aa12.37□□□□□ -0.43
CLSTN3-208ENST00000538933 LIMK2P53671 638 aa12.37□□□□□ -0.43
CLSTN3-208ENST00000538933 ITGA8P53708 1063 aa12.37□□□□□ -0.43
CLSTN3-208ENST00000538933 CAV1Q03135 178 aa12.37□□□□□ -0.43
CLSTN3-208ENST00000538933 BCL2L1Q07817 233 aa12.37□□□□□ -0.43
CLSTN3-208ENST00000538933 SEMA5AQ13591 1074 aa12.37□□□□□ -0.43
CLSTN3-208ENST00000538933 INPP5AQ14642 412 aa12.37□□□□□ -0.43
CLSTN3-208ENST00000538933 CLPPQ16740 277 aaPredicted RBP12.37□□□□□ -0.43
CLSTN3-208ENST00000538933 MYLK3Q32MK0 819 aa12.37□□□□□ -0.43
CLSTN3-208ENST00000538933 MAP9Q49MG5 647 aa12.37□□□□□ -0.43
CLSTN3-208ENST00000538933 LRRC73Q5JTD7 316 aa12.37□□□□□ -0.43
CLSTN3-208ENST00000538933 DUPD1Q68J44 220 aa12.37□□□□□ -0.43
CLSTN3-208ENST00000538933 TIPARPQ7Z3E1 657 aaKnown RBP12.37□□□□□ -0.43
CLSTN3-208ENST00000538933 HEATR4Q86WZ0 1026 aa12.37□□□□□ -0.43
CLSTN3-208ENST00000538933 UNC5BQ8IZJ1 945 aa12.37□□□□□ -0.43
CLSTN3-208ENST00000538933 BMPERQ8N8U9 685 aa12.37□□□□□ -0.43
CLSTN3-208ENST00000538933 SPATA22Q8NHS9 363 aa12.37□□□□□ -0.43
CLSTN3-208ENST00000538933 IMP4Q96G21 291 aaKnown RBP12.37□□□□□ -0.43
CLSTN3-208ENST00000538933 PDXPQ96GD0 296 aa12.37□□□□□ -0.43
CLSTN3-208ENST00000538933 CCDC74BQ96LY2 380 aa12.37□□□□□ -0.43
CLSTN3-208ENST00000538933 ASPSCR1Q9BZE9 553 aa12.37□□□□□ -0.43
CLSTN3-208ENST00000538933 LRRC40Q9H9A6 602 aa12.37□□□□□ -0.43
CLSTN3-208ENST00000538933 GPN2Q9H9Y4 310 aaPredicted RBP12.37□□□□□ -0.43
CLSTN3-208ENST00000538933 NOD2Q9HC29 1040 aa12.37□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 22.8 ms