RNA–Protein interactions for RNA: ENST00000537706.5

USP28-205, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 1 (best) BASIC

Gene USP28, Length 1,900 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-205ENST00000537706 ADAM8P78325 824 aa8.96□□□□□ -0.97
USP28-205ENST00000537706 NSUN2Q08J23 767 aaKnown RBP eCLIP8.96□□□□□ -0.97
USP28-205ENST00000537706 MYBPHQ13203 477 aa8.96□□□□□ -0.97
USP28-205ENST00000537706 C3AR1Q16581 482 aa8.96□□□□□ -0.97
USP28-205ENST00000537706 ZCWPW2Q504Y3 356 aa8.96□□□□□ -0.97
USP28-205ENST00000537706 ISLR2Q6UXK2 745 aa8.96□□□□□ -0.97
USP28-205ENST00000537706 TRIM72Q6ZMU5 477 aa8.96□□□□□ -0.97
USP28-205ENST00000537706 B4GALNT4Q76KP1 1039 aa8.96□□□□□ -0.97
USP28-205ENST00000537706 CARFQ8N187 725 aa8.96□□□□□ -0.97
USP28-205ENST00000537706 SLC38A9Q8NBW4 561 aa8.96□□□□□ -0.97
USP28-205ENST00000537706 ACRBPQ8NEB7 543 aa8.96□□□□□ -0.97
USP28-205ENST00000537706 SLC35C1Q96A29 364 aa8.96□□□□□ -0.97
USP28-205ENST00000537706 PTERQ96BW5 349 aa8.96□□□□□ -0.97
USP28-205ENST00000537706 COX14Q96I36 57 aa8.96□□□□□ -0.97
USP28-205ENST00000537706 MAP3K3Q99759 626 aa8.96□□□□□ -0.97
USP28-205ENST00000537706 LHPPQ9H008 270 aa8.96□□□□□ -0.97
USP28-205ENST00000537706 RBSNQ9H1K0 784 aa8.96□□□□□ -0.97
USP28-205ENST00000537706 ABCG8Q9H221 673 aa8.96□□□□□ -0.97
USP28-205ENST00000537706 PDCL3Q9H2J4 239 aa8.96□□□□□ -0.97
USP28-205ENST00000537706 KLC4Q9NSK0 619 aa8.96□□□□□ -0.97
USP28-205ENST00000537706 SEPT11Q9NVA2 429 aaKnown RBP8.96□□□□□ -0.97
USP28-205ENST00000537706 DNAJB12Q9NXW2 375 aaKnown RBP8.96□□□□□ -0.97
USP28-205ENST00000537706 ST6GALNAC2Q9UJ37 374 aa8.96□□□□□ -0.97
USP28-205ENST00000537706 SERTAD3Q9UJW9 196 aa8.96□□□□□ -0.97
USP28-205ENST00000537706 PCDHGC3Q9UN70 934 aa8.96□□□□□ -0.97
USP28-205ENST00000537706 FER1L5A0AVI2 2057 aa8.96□□□□□ -0.98
USP28-205ENST00000537706 SOCS5O75159 536 aa8.95□□□□□ -0.98
USP28-205ENST00000537706 PYGMP11217 842 aa8.95□□□□□ -0.98
USP28-205ENST00000537706 PCSK6P29122 969 aa8.95□□□□□ -0.98
USP28-205ENST00000537706 EPHB2P29323 1055 aa8.95□□□□□ -0.98
USP28-205ENST00000537706 SCNN1BP51168 640 aa8.95□□□□□ -0.98
USP28-205ENST00000537706 FKBP3Q00688 224 aaKnown RBP8.95□□□□□ -0.98
USP28-205ENST00000537706 DMPKQ09013 629 aa8.95□□□□□ -0.98
USP28-205ENST00000537706 MFAP5Q13361 173 aa8.95□□□□□ -0.98
USP28-205ENST00000537706 INSCQ1MX18 579 aa8.95□□□□□ -0.98
USP28-205ENST00000537706 PTCHD3Q3KNS1 767 aa8.95□□□□□ -0.98
USP28-205ENST00000537706 ARTNQ5T4W7 220 aa8.95□□□□□ -0.98
USP28-205ENST00000537706 ARHGEF19Q8IW93 802 aa8.95□□□□□ -0.98
USP28-205ENST00000537706 DNAAF3Q8N9W5 541 aa8.95□□□□□ -0.98
USP28-205ENST00000537706 SUN3Q8TAQ9 357 aa8.95□□□□□ -0.98
USP28-205ENST00000537706 NACC2Q96BF6 587 aa8.95□□□□□ -0.98
USP28-205ENST00000537706 KLC2Q9H0B6 622 aa8.95□□□□□ -0.98
USP28-205ENST00000537706 CARD9Q9H257 536 aa8.95□□□□□ -0.98
USP28-205ENST00000537706 CD84Q9UIB8 345 aa8.95□□□□□ -0.98
USP28-205ENST00000537706 CFAP45Q9UL16 551 aa8.95□□□□□ -0.98
USP28-205ENST00000537706 MEMO1Q9Y316 297 aa8.95□□□□□ -0.98
USP28-205ENST00000537706 CCDC66A2RUB6 948 aa8.95□□□□□ -0.98
USP28-205ENST00000537706 ARHGAP42A6NI28 874 aa8.95□□□□□ -0.98
USP28-205ENST00000537706 WASH4PA8MWX3 477 aa8.95□□□□□ -0.98
USP28-205ENST00000537706 TRAFD1O14545 582 aaPredicted RBP8.95□□□□□ -0.98
USP28-205ENST00000537706 RASAL1O95294 804 aa8.95□□□□□ -0.98
USP28-205ENST00000537706 HALP42357 657 aa8.95□□□□□ -0.98
USP28-205ENST00000537706 GPR18Q14330 331 aa8.95□□□□□ -0.98
USP28-205ENST00000537706 RFTN1Q14699 578 aaPredicted RBP8.95□□□□□ -0.98
USP28-205ENST00000537706 WDTC1Q8N5D0 677 aa8.95□□□□□ -0.98
USP28-205ENST00000537706 EHBP1Q8NDI1 1231 aa8.95□□□□□ -0.98
USP28-205ENST00000537706 RMND5BQ96G75 393 aaPredicted RBP8.95□□□□□ -0.98
USP28-205ENST00000537706 SMR3AQ99954 134 aa8.95□□□□□ -0.98
USP28-205ENST00000537706 SLC40A1Q9NP59 571 aa8.95□□□□□ -0.98
USP28-205ENST00000537706 GPATCH2LQ9NWQ4 482 aa8.95□□□□□ -0.98
USP28-205ENST00000537706 DNPEPQ9ULA0 475 aa8.95□□□□□ -0.98
USP28-205ENST00000537706 SIK3Q9Y2K2 1263 aa8.95□□□□□ -0.98
USP28-205ENST00000537706 CSMD2Q7Z408 3487 aa8.95□□□□□ -0.98
USP28-205ENST00000537706 CCDC78A2IDD5 438 aa8.94□□□□□ -0.98
USP28-205ENST00000537706 E7EQ34 232 aa8.94□□□□□ -0.98
USP28-205ENST00000537706 HTRA2O43464 458 aaPredicted RBP8.94□□□□□ -0.98
USP28-205ENST00000537706 PRAMEF11O60813 436 aa8.94□□□□□ -0.98
USP28-205ENST00000537706 ZNF30P17039 623 aa8.94□□□□□ -0.98
USP28-205ENST00000537706 VCLP18206 1134 aa8.94□□□□□ -0.98
USP28-205ENST00000537706 ME1P48163 572 aa8.94□□□□□ -0.98
USP28-205ENST00000537706 CCDC40Q4G0X9 1142 aa8.94□□□□□ -0.98
USP28-205ENST00000537706 PTPN20Q4JDL3 420 aa8.94□□□□□ -0.98
USP28-205ENST00000537706 LINC00696Q6ZRV3 163 aa8.94□□□□□ -0.98
USP28-205ENST00000537706 OOSP2Q86WS3 158 aa8.94□□□□□ -0.98
USP28-205ENST00000537706 TAB3Q8N5C8 712 aaPredicted RBP8.94□□□□□ -0.98
USP28-205ENST00000537706 TSEN2Q8NCE0 465 aaKnown RBP8.94□□□□□ -0.98
USP28-205ENST00000537706 OR2Y1Q8NGV0 311 aa8.94□□□□□ -0.98
USP28-205ENST00000537706 PHF10Q8WUB8 498 aaKnown RBP8.94□□□□□ -0.98
USP28-205ENST00000537706 SPOCK2Q92563 424 aa8.94□□□□□ -0.98
USP28-205ENST00000537706 SDCCAG3Q96C92 435 aa8.94□□□□□ -0.98
USP28-205ENST00000537706 C18orf8Q96DM3 657 aa8.94□□□□□ -0.98
USP28-205ENST00000537706 CFAP57Q96MR6 1250 aa8.94□□□□□ -0.98
USP28-205ENST00000537706 KREMEN1Q96MU8 473 aa8.94□□□□□ -0.98
USP28-205ENST00000537706 TMEM121Q9BTD3 319 aa8.94□□□□□ -0.98
USP28-205ENST00000537706 ZNF395Q9H8N7 513 aaPredicted RBP8.94□□□□□ -0.98
USP28-205ENST00000537706 SP110Q9HB58 689 aa8.94□□□□□ -0.98
USP28-205ENST00000537706 UBE2TQ9NPD8 197 aaPredicted RBP8.94□□□□□ -0.98
USP28-205ENST00000537706 IFT80Q9P2H3 777 aaPredicted RBP8.94□□□□□ -0.98
USP28-205ENST00000537706 ZNF624Q9P2J8 865 aaPredicted RBP8.94□□□□□ -0.98
USP28-205ENST00000537706 MYO7BQ6PIF6 2116 aa8.94□□□□□ -0.98
USP28-205ENST00000537706 TRIM49BA6NDI0 452 aa8.93□□□□□ -0.98
USP28-205ENST00000537706 GOLGA6L4A6NEF3 574 aa8.93□□□□□ -0.98
USP28-205ENST00000537706 TMEM150CB9EJG8 249 aa8.93□□□□□ -0.98
USP28-205ENST00000537706 ACTN4O43707 911 aaKnown RBP8.93□□□□□ -0.98
USP28-205ENST00000537706 VEGFDO43915 354 aa8.93□□□□□ -0.98
USP28-205ENST00000537706 KLF7O75840 302 aaPredicted RBP8.93□□□□□ -0.98
USP28-205ENST00000537706 SOD1P00441 154 aa8.93□□□□□ -0.98
USP28-205ENST00000537706 ATP1A1P05023 1023 aaKnown RBP8.93□□□□□ -0.98
USP28-205ENST00000537706 UQCRHP07919 91 aa8.93□□□□□ -0.98
USP28-205ENST00000537706 IDSP22304 550 aa8.93□□□□□ -0.98
Retrieved 100 of 20,778 RNA–protein pairs in 35.3 ms