RNA–Protein interactions for RNA: ENST00000527889.5

CD44-226, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 543 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-226ENST00000527889 OVCA2Q8WZ82 227 aa4.2□□□□□ -1.74
CD44-226ENST00000527889 CPT1BQ92523 772 aa4.2□□□□□ -1.74
CD44-226ENST00000527889 MAML1Q92585 1016 aa4.2□□□□□ -1.74
CD44-226ENST00000527889 PRCCQ92733 491 aaPredicted RBP4.2□□□□□ -1.74
CD44-226ENST00000527889 NELL1Q92832 810 aa4.2□□□□□ -1.74
CD44-226ENST00000527889 IGSF8Q969P0 613 aa4.2□□□□□ -1.74
CD44-226ENST00000527889 RAB24Q969Q5 203 aa4.2□□□□□ -1.74
CD44-226ENST00000527889 PSMG2Q969U7 264 aa4.2□□□□□ -1.74
CD44-226ENST00000527889 RTP4Q96DX8 246 aa4.2□□□□□ -1.74
CD44-226ENST00000527889 TCEAL4Q96EI5 215 aa4.2□□□□□ -1.74
CD44-226ENST00000527889 MISP3Q96FF7 219 aa4.2□□□□□ -1.74
CD44-226ENST00000527889 P2RY11Q96G91 374 aa4.2□□□□□ -1.74
CD44-226ENST00000527889 CLPTM1LQ96KA5 538 aa4.2□□□□□ -1.74
CD44-226ENST00000527889 MSLNLQ96KJ4 702 aa4.2□□□□□ -1.74
CD44-226ENST00000527889 HIST1H2AHQ96KK5 128 aa4.2□□□□□ -1.74
CD44-226ENST00000527889 BTN2A3PQ96KV6 586 aa4.2□□□□□ -1.74
CD44-226ENST00000527889 MRGPRX4Q96LA9 322 aa4.2□□□□□ -1.74
CD44-226ENST00000527889 C9orf72Q96LT7 481 aa4.2□□□□□ -1.74
CD44-226ENST00000527889 CEP295NLQ96MC4 621 aa4.2□□□□□ -1.74
CD44-226ENST00000527889 ZIM3Q96PE6 472 aa4.2□□□□□ -1.74
CD44-226ENST00000527889 TGS1Q96RS0 853 aaKnown RBP4.2□□□□□ -1.74
CD44-226ENST00000527889 CYP2S1Q96SQ9 504 aa4.2□□□□□ -1.74
CD44-226ENST00000527889 PRMT1Q99873 361 aaKnown RBP4.2□□□□□ -1.74
CD44-226ENST00000527889 HIST1H2AJQ99878 128 aa4.2□□□□□ -1.74
CD44-226ENST00000527889 SOX7Q9BT81 388 aa4.2□□□□□ -1.74
CD44-226ENST00000527889 FAM167BQ9BTA0 163 aa4.2□□□□□ -1.74
CD44-226ENST00000527889 TXLNGYQ9BZA5 131 aa4.2□□□□□ -1.74
CD44-226ENST00000527889 EPB41L4BQ9H329 900 aa4.2□□□□□ -1.74
CD44-226ENST00000527889 CATSPERBQ9H7T0 1116 aa4.2□□□□□ -1.74
CD44-226ENST00000527889 TNFRSF12AQ9NP84 129 aa4.2□□□□□ -1.74
CD44-226ENST00000527889 SAYSD1Q9NPB0 183 aa4.2□□□□□ -1.74
CD44-226ENST00000527889 GKN1Q9NS71 199 aa4.2□□□□□ -1.74
CD44-226ENST00000527889 PNPOQ9NVS9 261 aa4.2□□□□□ -1.74
CD44-226ENST00000527889 DONSONQ9NYP3 566 aa4.2□□□□□ -1.74
CD44-226ENST00000527889 EPS15L1Q9UBC2 864 aa4.2□□□□□ -1.74
CD44-226ENST00000527889 HSFX1Q9UBD0 423 aa4.2□□□□□ -1.74
CD44-226ENST00000527889 UXTQ9UBK9 157 aaPredicted RBP4.2□□□□□ -1.74
CD44-226ENST00000527889 MTRF1LQ9UGC7 380 aaKnown RBP4.2□□□□□ -1.74
CD44-226ENST00000527889 SLC12A6Q9UHW9 1150 aa4.2□□□□□ -1.74
CD44-226ENST00000527889 FBXO10Q9UK96 956 aa4.2□□□□□ -1.74
CD44-226ENST00000527889 SSX2IPQ9Y2D8 614 aa4.2□□□□□ -1.74
CD44-226ENST00000527889 HBS1LQ9Y450 684 aaKnown RBP4.2□□□□□ -1.74
CD44-226ENST00000527889 COL4A2P08572 1712 aa4.2□□□□□ -1.74
CD44-226ENST00000527889 NINQ8N4C6 2090 aa4.2□□□□□ -1.74
CD44-226ENST00000527889 THADAQ6YHU6 1953 aa4.2□□□□□ -1.74
CD44-226ENST00000527889 ZFYVE26Q68DK2 2539 aa4.2□□□□□ -1.74
CD44-226ENST00000527889 PLXND1Q9Y4D7 1925 aa4.19□□□□□ -1.74
CD44-226ENST00000527889 A0A1W2PPC4 97 aa4.19□□□□□ -1.74
CD44-226ENST00000527889 FITM1A5D6W6 292 aa4.19□□□□□ -1.74
CD44-226ENST00000527889 C5orf60A6NFR6 353 aa4.19□□□□□ -1.74
CD44-226ENST00000527889 SMIM23A6NLE4 172 aa4.19□□□□□ -1.74
CD44-226ENST00000527889 C5orf67F2Z3F1 127 aa4.19□□□□□ -1.74
CD44-226ENST00000527889 F5H5T6 163 aa4.19□□□□□ -1.74
CD44-226ENST00000527889 BOLA2-SMG1P6H3BVE0 249 aa4.19□□□□□ -1.74
CD44-226ENST00000527889 AGPSO00116 658 aa4.19□□□□□ -1.74
CD44-226ENST00000527889 KCNK1O00180 336 aa4.19□□□□□ -1.74
CD44-226ENST00000527889 RFXAPO00287 272 aa4.19□□□□□ -1.74
CD44-226ENST00000527889 NCAM2O15394 837 aa4.19□□□□□ -1.74
CD44-226ENST00000527889 FFAR2O15552 330 aa4.19□□□□□ -1.74
CD44-226ENST00000527889 ATP8B1O43520 1251 aa4.19□□□□□ -1.74
CD44-226ENST00000527889 ACSL4O60488 711 aa4.19□□□□□ -1.74
CD44-226ENST00000527889 PSPNO60542 156 aa4.19□□□□□ -1.74
CD44-226ENST00000527889 TMCC2O75069 709 aa4.19□□□□□ -1.74
CD44-226ENST00000527889 GCATO75600 419 aa4.19□□□□□ -1.74
CD44-226ENST00000527889 STC2O76061 302 aa4.19□□□□□ -1.74
CD44-226ENST00000527889 METTL18O95568 372 aa4.19□□□□□ -1.74
CD44-226ENST00000527889 ACSL3O95573 720 aa4.19□□□□□ -1.74
CD44-226ENST00000527889 KLKB1P03952 638 aa4.19□□□□□ -1.74
CD44-226ENST00000527889 CYBBP04839 570 aa4.19□□□□□ -1.74
CD44-226ENST00000527889 RB1P06400 928 aa4.19□□□□□ -1.74
CD44-226ENST00000527889 APRTP07741 180 aa4.19□□□□□ -1.74
CD44-226ENST00000527889 ENO2P09104 434 aaPredicted RBP4.19□□□□□ -1.74
CD44-226ENST00000527889 XPAP23025 273 aaPredicted RBP4.19□□□□□ -1.74
CD44-226ENST00000527889 PTPN3P26045 913 aa4.19□□□□□ -1.74
CD44-226ENST00000527889 PSMB4P28070 264 aa4.19□□□□□ -1.74
CD44-226ENST00000527889 CORO1AP31146 461 aaKnown RBP4.19□□□□□ -1.74
CD44-226ENST00000527889 SERPINB6P35237 376 aa4.19□□□□□ -1.74
CD44-226ENST00000527889 KRT20P35900 424 aa4.19□□□□□ -1.74
CD44-226ENST00000527889 GARSP41250 739 aaKnown RBP4.19□□□□□ -1.74
CD44-226ENST00000527889 CCR2P41597 374 aa4.19□□□□□ -1.74
CD44-226ENST00000527889 SLC6A9P48067 706 aa4.19□□□□□ -1.74
CD44-226ENST00000527889 SGSHP51688 502 aa4.19□□□□□ -1.74
CD44-226ENST00000527889 ZNF135P52742 658 aaPredicted RBP4.19□□□□□ -1.74
CD44-226ENST00000527889 PMS2P54278 862 aa4.19□□□□□ -1.74
CD44-226ENST00000527889 MLLT6P55198 1093 aaPredicted RBP4.19□□□□□ -1.74
CD44-226ENST00000527889 NRG3P56975 720 aa4.19□□□□□ -1.74
CD44-226ENST00000527889 RPS24P62847 133 aaKnown RBP4.19□□□□□ -1.74
CD44-226ENST00000527889 NTHL1P78549 312 aa4.19□□□□□ -1.74
CD44-226ENST00000527889 COG7P83436 770 aa4.19□□□□□ -1.74
CD44-226ENST00000527889 ZXDBP98169 803 aa4.19□□□□□ -1.74
CD44-226ENST00000527889 PFKPQ01813 784 aa4.19□□□□□ -1.74
CD44-226ENST00000527889 CAV1Q03135 178 aa4.19□□□□□ -1.74
CD44-226ENST00000527889 UBE3AQ05086 875 aa4.19□□□□□ -1.74
CD44-226ENST00000527889 ZP2Q05996 745 aa4.19□□□□□ -1.74
CD44-226ENST00000527889 PPIDQ08752 370 aaKnown RBP4.19□□□□□ -1.74
CD44-226ENST00000527889 MGAT5Q09328 741 aa4.19□□□□□ -1.74
CD44-226ENST00000527889 GALNT2Q10471 571 aa4.19□□□□□ -1.74
CD44-226ENST00000527889 GALNT1Q10472 559 aaPredicted RBP4.19□□□□□ -1.74
CD44-226ENST00000527889 PDIA2Q13087 525 aaKnown RBP4.19□□□□□ -1.74
CD44-226ENST00000527889 OLIG2Q13516 323 aa4.19□□□□□ -1.74
Retrieved 100 of 20,778 RNA–protein pairs in 22.1 ms