RNA–Protein interactions for RNA: ENST00000514987.5

NUP54-217, Transcript of nucleoporin 54, humanhuman

TSL 2 BASIC

Gene NUP54, Length 1,563 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-217ENST00000514987 ADAMTS19Q8TE59 1207 aa14.68□□□□□ -0.06
NUP54-217ENST00000514987 MRPS31Q92665 395 aaKnown RBP14.68□□□□□ -0.06
NUP54-217ENST00000514987 SLCO4A1Q96BD0 722 aa14.68□□□□□ -0.06
NUP54-217ENST00000514987 ZNF689Q96CS4 500 aaPredicted RBP14.68□□□□□ -0.06
NUP54-217ENST00000514987 FAM126AQ9BYI3 521 aaPredicted RBP14.68□□□□□ -0.06
NUP54-217ENST00000514987 ZNF696Q9H7X3 374 aa14.68□□□□□ -0.06
NUP54-217ENST00000514987 IL21Q9HBE4 155 aa14.68□□□□□ -0.06
NUP54-217ENST00000514987 SARS2Q9NP81 518 aaKnown RBP14.68□□□□□ -0.06
NUP54-217ENST00000514987 SLC52A3Q9NQ40 469 aa14.68□□□□□ -0.06
NUP54-217ENST00000514987 CCM2LQ9NUG4 571 aaPredicted RBP14.68□□□□□ -0.06
NUP54-217ENST00000514987 KLHL42Q9P2K6 505 aa14.68□□□□□ -0.06
NUP54-217ENST00000514987 PADI4Q9UM07 663 aa14.68□□□□□ -0.06
NUP54-217ENST00000514987 FNDC3AQ9Y2H6 1198 aaKnown RBP14.68□□□□□ -0.06
NUP54-217ENST00000514987 COL4A6Q14031 1691 aa14.67□□□□□ -0.06
NUP54-217ENST00000514987 TRBV5-4A0A0C4DH59 114 aa14.67□□□□□ -0.06
NUP54-217ENST00000514987 CCDC154A6NI56 674 aa14.67□□□□□ -0.06
NUP54-217ENST00000514987 FXYD1O00168 92 aa14.67□□□□□ -0.06
NUP54-217ENST00000514987 PRAMEF1O95521 474 aa14.67□□□□□ -0.06
NUP54-217ENST00000514987 GPIP06744 558 aa14.67□□□□□ -0.06
NUP54-217ENST00000514987 FAM58BPP0C7Q3 252 aa14.67□□□□□ -0.06
NUP54-217ENST00000514987 FCGR1AP12314 374 aa14.67□□□□□ -0.06
NUP54-217ENST00000514987 SLC6A2P23975 617 aa14.67□□□□□ -0.06
NUP54-217ENST00000514987 NME5P56597 212 aa14.67□□□□□ -0.06
NUP54-217ENST00000514987 EEFSECP57772 596 aaKnown RBP14.67□□□□□ -0.06
NUP54-217ENST00000514987 SLC7A9P82251 487 aa14.67□□□□□ -0.06
NUP54-217ENST00000514987 NFATC2Q13469 925 aa14.67□□□□□ -0.06
NUP54-217ENST00000514987 NFYCQ13952 458 aa14.67□□□□□ -0.06
NUP54-217ENST00000514987 TTC23LQ6PF05 361 aa14.67□□□□□ -0.06
NUP54-217ENST00000514987 RNF165Q6ZSG1 346 aa14.67□□□□□ -0.06
NUP54-217ENST00000514987 ERMP1Q7Z2K6 904 aa14.67□□□□□ -0.06
NUP54-217ENST00000514987 SERPINA9Q86WD7 417 aa14.67□□□□□ -0.06
NUP54-217ENST00000514987 TMEM199Q8N511 208 aa14.67□□□□□ -0.06
NUP54-217ENST00000514987 PAF1Q8N7H5 531 aa14.67□□□□□ -0.06
NUP54-217ENST00000514987 SNX31Q8N9S9 440 aa14.67□□□□□ -0.06
NUP54-217ENST00000514987 PHC3Q8NDX5 983 aa14.67□□□□□ -0.06
NUP54-217ENST00000514987 DDI1Q8WTU0 396 aa14.67□□□□□ -0.06
NUP54-217ENST00000514987 ZNF296Q8WUU4 475 aaPredicted RBP14.67□□□□□ -0.06
NUP54-217ENST00000514987 SLC45A3Q96JT2 553 aa14.67□□□□□ -0.06
NUP54-217ENST00000514987 DEFB118Q96PH6 123 aa14.67□□□□□ -0.06
NUP54-217ENST00000514987 MRPS26Q9BYN8 205 aaKnown RBP14.67□□□□□ -0.06
NUP54-217ENST00000514987 HEBP1Q9NRV9 189 aa14.67□□□□□ -0.06
NUP54-217ENST00000514987 ABCB8Q9NUT2 735 aa14.67□□□□□ -0.06
NUP54-217ENST00000514987 GIMAP2Q9UG22 337 aa14.67□□□□□ -0.06
NUP54-217ENST00000514987 ZNF225Q9UK10 706 aa14.67□□□□□ -0.06
NUP54-217ENST00000514987 CNOT6Q9ULM6 557 aaKnown RBP14.67□□□□□ -0.06
NUP54-217ENST00000514987 SH3BP1Q9Y3L3 701 aa14.67□□□□□ -0.06
NUP54-217ENST00000514987 OARD1Q9Y530 152 aa14.67□□□□□ -0.06
NUP54-217ENST00000514987 PCDHA9Q9Y5H5 950 aa14.67□□□□□ -0.06
NUP54-217ENST00000514987 SNX13Q9Y5W8 968 aa14.67□□□□□ -0.06
NUP54-217ENST00000514987 ZNF106Q9H2Y7 1883 aaKnown RBP14.66□□□□□ -0.06
NUP54-217ENST00000514987 C1orf232A0A0U1RR37 186 aa14.66□□□□□ -0.06
NUP54-217ENST00000514987 SYNCRIPO60506 623 aaKnown RBP14.66□□□□□ -0.06
NUP54-217ENST00000514987 OR4F21O95013 312 aa14.66□□□□□ -0.06
NUP54-217ENST00000514987 UMPSP11172 480 aa14.66□□□□□ -0.06
NUP54-217ENST00000514987 CTPS1P17812 591 aa14.66□□□□□ -0.06
NUP54-217ENST00000514987 PSMA4P25789 261 aaKnown RBP14.66□□□□□ -0.06
NUP54-217ENST00000514987 SERPINA4P29622 427 aa14.66□□□□□ -0.06
NUP54-217ENST00000514987 PPM1AP35813 382 aa14.66□□□□□ -0.06
NUP54-217ENST00000514987 GRIA3P42263 894 aa14.66□□□□□ -0.06
NUP54-217ENST00000514987 DIO3P55073 304 aa14.66□□□□□ -0.06
NUP54-217ENST00000514987 ECT2LQ008S8 904 aa14.66□□□□□ -0.06
NUP54-217ENST00000514987 CREB5Q02930 508 aa14.66□□□□□ -0.06
NUP54-217ENST00000514987 EMX2Q04743 252 aa14.66□□□□□ -0.06
NUP54-217ENST00000514987 PRKG2Q13237 762 aa14.66□□□□□ -0.06
NUP54-217ENST00000514987 GTF2H2Q13888 395 aa14.66□□□□□ -0.06
NUP54-217ENST00000514987 TTLL9Q3SXZ7 439 aa14.66□□□□□ -0.06
NUP54-217ENST00000514987 C6orf136Q5SQH8 315 aa14.66□□□□□ -0.06
NUP54-217ENST00000514987 FOXB2Q5VYV0 432 aa14.66□□□□□ -0.06
NUP54-217ENST00000514987 GTF2H2CQ6P1K8 395 aa14.66□□□□□ -0.06
NUP54-217ENST00000514987 SLC30A9Q6PML9 568 aa14.66□□□□□ -0.06
NUP54-217ENST00000514987 CYP2R1Q6VVX0 501 aa14.66□□□□□ -0.06
NUP54-217ENST00000514987 MACC1Q6ZN28 852 aa14.66□□□□□ -0.06
NUP54-217ENST00000514987 PTRH1Q86Y79 214 aaKnown RBP14.66□□□□□ -0.06
NUP54-217ENST00000514987 CAMK1DQ8IU85 385 aa14.66□□□□□ -0.06
NUP54-217ENST00000514987 GALNT4Q8N4A0 578 aa14.66□□□□□ -0.06
NUP54-217ENST00000514987 FIBINQ8TAL6 211 aa14.66□□□□□ -0.06
NUP54-217ENST00000514987 METTL6Q8TCB7 284 aa14.66□□□□□ -0.06
NUP54-217ENST00000514987 ZFAND2BQ8WV99 257 aa14.66□□□□□ -0.06
NUP54-217ENST00000514987 LRTOMTQ8WZ04 291 aa14.66□□□□□ -0.06
NUP54-217ENST00000514987 PPWD1Q96BP3 646 aaKnown RBP14.66□□□□□ -0.06
NUP54-217ENST00000514987 PLEKHG4BQ96PX9 1271 aa14.66□□□□□ -0.06
NUP54-217ENST00000514987 LYSMD1Q96S90 227 aa14.66□□□□□ -0.06
NUP54-217ENST00000514987 HTATIP2Q9BUP3 242 aa14.66□□□□□ -0.06
NUP54-217ENST00000514987 SPATA16Q9BXB7 569 aa14.66□□□□□ -0.06
NUP54-217ENST00000514987 CIPCQ9C0C6 399 aa14.66□□□□□ -0.06
NUP54-217ENST00000514987 ASB8Q9H765 288 aa14.66□□□□□ -0.06
NUP54-217ENST00000514987 ZNF334Q9HCZ1 680 aaPredicted RBP14.66□□□□□ -0.06
NUP54-217ENST00000514987 SLC4A7Q9Y6M7 1214 aa14.66□□□□□ -0.06
NUP54-217ENST00000514987 GLYATL1P3A0A0U1RQE8 302 aa14.65□□□□□ -0.06
NUP54-217ENST00000514987 A0A1B0GTL3 188 aa14.65□□□□□ -0.06
NUP54-217ENST00000514987 DHRS12A0PJE2 317 aa14.65□□□□□ -0.06
NUP54-217ENST00000514987 FFAR2O15552 330 aa14.65□□□□□ -0.06
NUP54-217ENST00000514987 EFCAB14O75071 495 aa14.65□□□□□ -0.06
NUP54-217ENST00000514987 ALPIP09923 528 aa14.65□□□□□ -0.06
NUP54-217ENST00000514987 CBSLP0DN79 551 aa14.65□□□□□ -0.06
NUP54-217ENST00000514987 PSMC3P17980 439 aa14.65□□□□□ -0.06
NUP54-217ENST00000514987 ACRV1P26436 265 aa14.65□□□□□ -0.06
NUP54-217ENST00000514987 PRDX3P30048 256 aaKnown RBP14.65□□□□□ -0.06
NUP54-217ENST00000514987 CBSP35520 551 aa14.65□□□□□ -0.06
NUP54-217ENST00000514987 SPAM1P38567 509 aa14.65□□□□□ -0.06
Retrieved 100 of 20,778 RNA–protein pairs in 49 ms