RNA–Protein interactions for RNA: ENST00000498473.6

MSH5-SAPCD1-208, Transcript of MSH5-SAPCD1 readthrough (NMD candidate), humanhuman

APPRIS ALT2 TSL 1 (best)

Gene MSH5-SAPCD1, Length 2,216 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-SAPCD1-208ENST00000498473 MERTKQ12866 999 aa15.93■□□□□ 0.14
MSH5-SAPCD1-208ENST00000498473 GRIK2Q13002 908 aa15.93■□□□□ 0.14
MSH5-SAPCD1-208ENST00000498473 NFYCQ13952 458 aa15.93■□□□□ 0.14
MSH5-SAPCD1-208ENST00000498473 SLC36A3Q495N2 470 aa15.93■□□□□ 0.14
MSH5-SAPCD1-208ENST00000498473 AFTPHQ6ULP2 937 aa15.93■□□□□ 0.14
MSH5-SAPCD1-208ENST00000498473 NUSAP1Q9BXS6 441 aaKnown RBP15.93■□□□□ 0.14
MSH5-SAPCD1-208ENST00000498473 LIN28AQ9H9Z2 209 aaKnown RBP15.93■□□□□ 0.14
MSH5-SAPCD1-208ENST00000498473 TIMMDC1Q9NPL8 285 aa15.93■□□□□ 0.14
MSH5-SAPCD1-208ENST00000498473 SLAMF8Q9P0V8 285 aa15.93■□□□□ 0.14
MSH5-SAPCD1-208ENST00000498473 PAIP2BQ9ULR5 123 aaKnown RBP15.93■□□□□ 0.14
MSH5-SAPCD1-208ENST00000498473 ASB1Q9Y576 335 aa15.93■□□□□ 0.14
MSH5-SAPCD1-208ENST00000498473 PFDN1O60925 122 aa15.92■□□□□ 0.14
MSH5-SAPCD1-208ENST00000498473 EEDO75530 441 aaKnown RBP15.92■□□□□ 0.14
MSH5-SAPCD1-208ENST00000498473 ESRRBO95718 433 aa15.92■□□□□ 0.14
MSH5-SAPCD1-208ENST00000498473 GPIP06744 558 aa15.92■□□□□ 0.14
MSH5-SAPCD1-208ENST00000498473 GATMP50440 423 aa15.92■□□□□ 0.14
MSH5-SAPCD1-208ENST00000498473 HPCAP84074 193 aa15.92■□□□□ 0.14
MSH5-SAPCD1-208ENST00000498473 SCIMPQ6UWF3 145 aa15.92■□□□□ 0.14
MSH5-SAPCD1-208ENST00000498473 LPCAT2Q7L5N7 544 aa15.92■□□□□ 0.14
MSH5-SAPCD1-208ENST00000498473 OTOP2Q7RTS6 562 aa15.92■□□□□ 0.14
MSH5-SAPCD1-208ENST00000498473 ERI1Q8IV48 349 aaKnown RBP15.92■□□□□ 0.14
MSH5-SAPCD1-208ENST00000498473 KIAA2013Q8IYS2 634 aa15.92■□□□□ 0.14
MSH5-SAPCD1-208ENST00000498473 GAB3Q8WWW8 586 aa15.92■□□□□ 0.14
MSH5-SAPCD1-208ENST00000498473 BADQ92934 168 aa15.92■□□□□ 0.14
MSH5-SAPCD1-208ENST00000498473 PSKH2Q96QS6 385 aa15.92■□□□□ 0.14
MSH5-SAPCD1-208ENST00000498473 C9orf16Q9BUW7 83 aa15.92■□□□□ 0.14
MSH5-SAPCD1-208ENST00000498473 BRINP2Q9C0B6 783 aa15.92■□□□□ 0.14
MSH5-SAPCD1-208ENST00000498473 ALG2Q9H553 416 aa15.92■□□□□ 0.14
MSH5-SAPCD1-208ENST00000498473 HCSTQ9UBK5 93 aa15.92■□□□□ 0.14
MSH5-SAPCD1-208ENST00000498473 ITGB1BP2Q9UKP3 347 aa15.92■□□□□ 0.14
MSH5-SAPCD1-208ENST00000498473 OAZ3Q9UMX2 235 aa15.92■□□□□ 0.14
MSH5-SAPCD1-208ENST00000498473 NCF1BA6NI72 391 aaPredicted RBP15.92■□□□□ 0.14
MSH5-SAPCD1-208ENST00000498473 NCF1CA8MVU1 366 aaPredicted RBP15.92■□□□□ 0.14
MSH5-SAPCD1-208ENST00000498473 BTN3A1O00481 513 aa15.92■□□□□ 0.14
MSH5-SAPCD1-208ENST00000498473 SYN3O14994 580 aa15.92■□□□□ 0.14
MSH5-SAPCD1-208ENST00000498473 NDUFS3O75489 264 aa15.92■□□□□ 0.14
MSH5-SAPCD1-208ENST00000498473 CRCPO75575 148 aa15.92■□□□□ 0.14
MSH5-SAPCD1-208ENST00000498473 RASAL1O95294 804 aa15.92■□□□□ 0.14
MSH5-SAPCD1-208ENST00000498473 ZDHHC11BP0C7U3 371 aa15.92■□□□□ 0.14
MSH5-SAPCD1-208ENST00000498473 NCF1P14598 390 aaPredicted RBP15.92■□□□□ 0.14
MSH5-SAPCD1-208ENST00000498473 NCK1P16333 377 aa15.92■□□□□ 0.14
MSH5-SAPCD1-208ENST00000498473 CR2P20023 1033 aa15.92■□□□□ 0.14
MSH5-SAPCD1-208ENST00000498473 CES1P23141 567 aa15.92■□□□□ 0.14
MSH5-SAPCD1-208ENST00000498473 IL12AP29459 219 aa15.92■□□□□ 0.14
MSH5-SAPCD1-208ENST00000498473 ARPP19P56211 112 aa15.92■□□□□ 0.14
MSH5-SAPCD1-208ENST00000498473 KCNK10P57789 538 aa15.92■□□□□ 0.14
MSH5-SAPCD1-208ENST00000498473 PHEXP78562 749 aa15.92■□□□□ 0.14
MSH5-SAPCD1-208ENST00000498473 GNA12Q03113 381 aa15.92■□□□□ 0.14
MSH5-SAPCD1-208ENST00000498473 LIPEQ05469 1076 aa15.92■□□□□ 0.14
MSH5-SAPCD1-208ENST00000498473 BFSP2Q13515 415 aa15.92■□□□□ 0.14
MSH5-SAPCD1-208ENST00000498473 TAF1AQ15573 450 aaPredicted RBP15.92■□□□□ 0.14
MSH5-SAPCD1-208ENST00000498473 PTPRNQ16849 979 aa15.92■□□□□ 0.14
MSH5-SAPCD1-208ENST00000498473 RSPO2Q6UXX9 243 aaPredicted RBP15.92■□□□□ 0.14
MSH5-SAPCD1-208ENST00000498473 PIANPQ8IYJ0 282 aa15.92■□□□□ 0.14
MSH5-SAPCD1-208ENST00000498473 PAPD5Q8NDF8 572 aaKnown RBP15.92■□□□□ 0.14
MSH5-SAPCD1-208ENST00000498473 ADAMTS16Q8TE57 1224 aa15.92■□□□□ 0.14
MSH5-SAPCD1-208ENST00000498473 ESAMQ96AP7 390 aa15.92■□□□□ 0.14
MSH5-SAPCD1-208ENST00000498473 ACOX2Q99424 681 aa15.92■□□□□ 0.14
MSH5-SAPCD1-208ENST00000498473 TUBA8Q9NY65 449 aaPredicted RBP15.92■□□□□ 0.14
MSH5-SAPCD1-208ENST00000498473 USP22Q9UPT9 525 aa15.92■□□□□ 0.14
MSH5-SAPCD1-208ENST00000498473 SYCE1LA8MT33 242 aa15.91■□□□□ 0.14
MSH5-SAPCD1-208ENST00000498473 F5H5T6 163 aa15.91■□□□□ 0.14
MSH5-SAPCD1-208ENST00000498473 H3BNC9 293 aa15.91■□□□□ 0.14
MSH5-SAPCD1-208ENST00000498473 INPP4BO15327 924 aa15.91■□□□□ 0.14
MSH5-SAPCD1-208ENST00000498473 BAIAP3O94812 1187 aa15.91■□□□□ 0.14
MSH5-SAPCD1-208ENST00000498473 UROSP10746 265 aa15.91■□□□□ 0.14
MSH5-SAPCD1-208ENST00000498473 FAM189BP81408 668 aa15.91■□□□□ 0.14
MSH5-SAPCD1-208ENST00000498473 CYP51A1Q16850 503 aa15.91■□□□□ 0.14
MSH5-SAPCD1-208ENST00000498473 CCDC92Q53HC0 331 aaPredicted RBP15.91■□□□□ 0.14
MSH5-SAPCD1-208ENST00000498473 CTSL3PQ5NE16 218 aa15.91■□□□□ 0.14
MSH5-SAPCD1-208ENST00000498473 PSAPL1Q6NUJ1 521 aa15.91■□□□□ 0.14
MSH5-SAPCD1-208ENST00000498473 LIN28BQ6ZN17 250 aaKnown RBP eCLIP15.91■□□□□ 0.14
MSH5-SAPCD1-208ENST00000498473 SLC24A5Q71RS6 500 aa15.91■□□□□ 0.14
MSH5-SAPCD1-208ENST00000498473 GLT6D1Q7Z4J2 308 aa15.91■□□□□ 0.14
MSH5-SAPCD1-208ENST00000498473 IFNEQ86WN2 208 aa15.91■□□□□ 0.14
MSH5-SAPCD1-208ENST00000498473 TMEM199Q8N511 208 aa15.91■□□□□ 0.14
MSH5-SAPCD1-208ENST00000498473 NKAPQ8N5F7 415 aaKnown RBP15.91■□□□□ 0.14
MSH5-SAPCD1-208ENST00000498473 EXOC2Q96KP1 924 aa15.91■□□□□ 0.14
MSH5-SAPCD1-208ENST00000498473 TMEM74Q96NL1 305 aa15.91■□□□□ 0.14
MSH5-SAPCD1-208ENST00000498473 TOX2Q96NM4 488 aa15.91■□□□□ 0.14
MSH5-SAPCD1-208ENST00000498473 HGH1Q9BTY7 390 aa15.91■□□□□ 0.14
MSH5-SAPCD1-208ENST00000498473 MAGEH1Q9H213 219 aa15.91■□□□□ 0.14
MSH5-SAPCD1-208ENST00000498473 CCDC68Q9H2F9 335 aa15.91■□□□□ 0.14
MSH5-SAPCD1-208ENST00000498473 MUC13Q9H3R2 512 aa15.91■□□□□ 0.14
MSH5-SAPCD1-208ENST00000498473 SEPT3Q9UH03 358 aa15.91■□□□□ 0.14
MSH5-SAPCD1-208ENST00000498473 HEMK1Q9Y5R4 338 aaPredicted RBP15.91■□□□□ 0.14
MSH5-SAPCD1-208ENST00000498473 MTMR11A4FU01 709 aa15.91■□□□□ 0.14
MSH5-SAPCD1-208ENST00000498473 INSIG1O15503 277 aa15.91■□□□□ 0.14
MSH5-SAPCD1-208ENST00000498473 OR1I1O60431 355 aa15.91■□□□□ 0.14
MSH5-SAPCD1-208ENST00000498473 TLR5O60602 858 aa15.91■□□□□ 0.14
MSH5-SAPCD1-208ENST00000498473 NIPSNAP2O75323 286 aa15.91■□□□□ 0.14
MSH5-SAPCD1-208ENST00000498473 SLC22A3O75751 556 aa15.91■□□□□ 0.14
MSH5-SAPCD1-208ENST00000498473 C1RP00736 705 aa15.91■□□□□ 0.14
MSH5-SAPCD1-208ENST00000498473 RFC2P35250 354 aa15.91■□□□□ 0.14
MSH5-SAPCD1-208ENST00000498473 EMP3P54852 163 aa15.91■□□□□ 0.14
MSH5-SAPCD1-208ENST00000498473 CTBSQ01459 385 aa15.91■□□□□ 0.14
MSH5-SAPCD1-208ENST00000498473 FUT11Q495W5 492 aa15.91■□□□□ 0.14
MSH5-SAPCD1-208ENST00000498473 PDCD4Q53EL6 469 aaKnown RBP15.91■□□□□ 0.14
MSH5-SAPCD1-208ENST00000498473 FAM171A1Q5VUB5 890 aa15.91■□□□□ 0.14
MSH5-SAPCD1-208ENST00000498473 LRRC43Q8N309 656 aa15.91■□□□□ 0.14
Retrieved 100 of 20,778 RNA–protein pairs in 16.6 ms