RNA–Protein interactions for RNA: ENST00000497849.1

VIM-208, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 634 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-208ENST00000497849 PRLP01236 227 aa16.15■□□□□ 0.18
VIM-208ENST00000497849 JCHAINP01591 159 aa16.15■□□□□ 0.18
VIM-208ENST00000497849 CDK11BP21127 795 aaKnown RBP16.15■□□□□ 0.18
VIM-208ENST00000497849 SPINT3P49223 89 aa16.15■□□□□ 0.18
VIM-208ENST00000497849 VAV2P52735 878 aa16.15■□□□□ 0.18
VIM-208ENST00000497849 KRT31Q15323 416 aa16.15■□□□□ 0.18
VIM-208ENST00000497849 KRTAP21-3Q3LHN1 58 aa16.15■□□□□ 0.18
VIM-208ENST00000497849 PLA2G4EQ3MJ16 856 aa16.15■□□□□ 0.18
VIM-208ENST00000497849 MARC1Q5VT66 337 aa16.15■□□□□ 0.18
VIM-208ENST00000497849 CRTC3Q6UUV7 619 aa16.15■□□□□ 0.18
VIM-208ENST00000497849 ABRAXAS1Q6UWZ7 409 aa16.15■□□□□ 0.18
VIM-208ENST00000497849 MED25Q71SY5 747 aa16.15■□□□□ 0.18
VIM-208ENST00000497849 MLPHQ9BV36 600 aaPredicted RBP16.15■□□□□ 0.18
VIM-208ENST00000497849 FAM83DQ9H4H8 585 aa16.15■□□□□ 0.18
VIM-208ENST00000497849 DTLQ9NZJ0 730 aa16.15■□□□□ 0.18
VIM-208ENST00000497849 TCFL5Q9UL49 500 aa16.15■□□□□ 0.18
VIM-208ENST00000497849 DNAJC16Q9Y2G8 782 aa16.15■□□□□ 0.18
VIM-208ENST00000497849 COPG1Q9Y678 874 aaKnown RBP16.15■□□□□ 0.18
VIM-208ENST00000497849 DCHS2Q6V1P9 2916 aa16.14■□□□□ 0.17
VIM-208ENST00000497849 PDZK1P1A8MUH7 402 aa16.14■□□□□ 0.17
VIM-208ENST00000497849 F5H423 210 aaPredicted RBP16.14■□□□□ 0.17
VIM-208ENST00000497849 CHUKO15111 745 aa16.14■□□□□ 0.17
VIM-208ENST00000497849 LRRTM2O43300 516 aa16.14■□□□□ 0.17
VIM-208ENST00000497849 RAB40ALP0C0E4 278 aa16.14■□□□□ 0.17
VIM-208ENST00000497849 PSMA2P25787 234 aa16.14■□□□□ 0.17
VIM-208ENST00000497849 RPL10P27635 214 aaKnown RBP16.14■□□□□ 0.17
VIM-208ENST00000497849 EPHB1P54762 984 aa16.14■□□□□ 0.17
VIM-208ENST00000497849 INSCQ1MX18 579 aa16.14■□□□□ 0.17
VIM-208ENST00000497849 VWA5B1Q5TIE3 1220 aa16.14■□□□□ 0.17
VIM-208ENST00000497849 TEX26Q8N6G2 289 aa16.14■□□□□ 0.17
VIM-208ENST00000497849 UBE2Q2Q8WVN8 375 aa16.14■□□□□ 0.17
VIM-208ENST00000497849 LYSMD1Q96S90 227 aa16.14■□□□□ 0.17
VIM-208ENST00000497849 MAP3K3Q99759 626 aa16.14■□□□□ 0.17
VIM-208ENST00000497849 TDRD1Q9BXT4 1180 aaKnown RBP16.14■□□□□ 0.17
VIM-208ENST00000497849 RBSNQ9H1K0 784 aa16.14■□□□□ 0.17
VIM-208ENST00000497849 NT5MQ9NPB1 228 aa16.14■□□□□ 0.17
VIM-208ENST00000497849 CHKBQ9Y259 395 aa16.14■□□□□ 0.17
VIM-208ENST00000497849 SVILO95425 2214 aa16.13■□□□□ 0.17
VIM-208ENST00000497849 MTA2O94776 668 aa16.13■□□□□ 0.17
VIM-208ENST00000497849 CAPN1P07384 714 aa16.13■□□□□ 0.17
VIM-208ENST00000497849 ZNF7P17097 686 aaPredicted RBP16.13■□□□□ 0.17
VIM-208ENST00000497849 DESP17661 470 aa16.13■□□□□ 0.17
VIM-208ENST00000497849 AMPD1P23109 780 aa16.13■□□□□ 0.17
VIM-208ENST00000497849 IL4RP24394 825 aa16.13■□□□□ 0.17
VIM-208ENST00000497849 MIPP30301 263 aa16.13■□□□□ 0.17
VIM-208ENST00000497849 DRG2P55039 364 aaKnown RBP16.13■□□□□ 0.17
VIM-208ENST00000497849 CDH6P55285 790 aa16.13■□□□□ 0.17
VIM-208ENST00000497849 ATP1A4Q13733 1029 aa16.13■□□□□ 0.17
VIM-208ENST00000497849 TDRD12Q587J7 1177 aaKnown RBP16.13■□□□□ 0.17
VIM-208ENST00000497849 PLEKHS1Q5SXH7 462 aa16.13■□□□□ 0.17
VIM-208ENST00000497849 PRAMEF17Q5VTA0 474 aa16.13■□□□□ 0.17
VIM-208ENST00000497849 IGFL3Q6UXB1 125 aa16.13■□□□□ 0.17
VIM-208ENST00000497849 ADGRG6Q86SQ4 1221 aa16.13■□□□□ 0.17
VIM-208ENST00000497849 TMEM126BQ8IUX1 230 aa16.13■□□□□ 0.17
VIM-208ENST00000497849 RBM12BQ8IXT5 1001 aaKnown RBP16.13■□□□□ 0.17
VIM-208ENST00000497849 MCOLN2Q8IZK6 566 aa16.13■□□□□ 0.17
VIM-208ENST00000497849 D2HGDHQ8N465 521 aa16.13■□□□□ 0.17
VIM-208ENST00000497849 ST6GALNAC3Q8NDV1 305 aa16.13■□□□□ 0.17
VIM-208ENST00000497849 ZNF501Q96CX3 271 aaPredicted RBP16.13■□□□□ 0.17
VIM-208ENST00000497849 PCMTD1Q96MG8 357 aaPredicted RBP16.13■□□□□ 0.17
VIM-208ENST00000497849 LRFN5Q96NI6 719 aa16.13■□□□□ 0.17
VIM-208ENST00000497849 NLNQ9BYT8 704 aa16.13■□□□□ 0.17
VIM-208ENST00000497849 TRIM39Q9HCM9 518 aa16.13■□□□□ 0.17
VIM-208ENST00000497849 SEPT11Q9NVA2 429 aaKnown RBP16.13■□□□□ 0.17
VIM-208ENST00000497849 LIMA1Q9UHB6 759 aaKnown RBP16.13■□□□□ 0.17
VIM-208ENST00000497849 DNPEPQ9ULA0 475 aa16.13■□□□□ 0.17
VIM-208ENST00000497849 C1orf232A0A0U1RR37 186 aa16.12■□□□□ 0.17
VIM-208ENST00000497849 PRSS44E7EML9 344 aa16.12■□□□□ 0.17
VIM-208ENST00000497849 MEN1O00255 615 aa16.12■□□□□ 0.17
VIM-208ENST00000497849 ZG16O60844 167 aa16.12■□□□□ 0.17
VIM-208ENST00000497849 KLK3P07288 261 aaPredicted RBP16.12■□□□□ 0.17
VIM-208ENST00000497849 EEF1GP26641 437 aaKnown RBP16.12■□□□□ 0.17
VIM-208ENST00000497849 CA5AP35218 305 aa16.12■□□□□ 0.17
VIM-208ENST00000497849 ZNF135P52742 658 aaPredicted RBP16.12■□□□□ 0.17
VIM-208ENST00000497849 RRADP55042 308 aa16.12■□□□□ 0.17
VIM-208ENST00000497849 TUBB4BP68371 445 aa16.12■□□□□ 0.17
VIM-208ENST00000497849 MAMLD1Q13495 774 aa16.12■□□□□ 0.17
VIM-208ENST00000497849 TUBB2AQ13885 445 aa16.12■□□□□ 0.17
VIM-208ENST00000497849 GPR19Q15760 415 aa16.12■□□□□ 0.17
VIM-208ENST00000497849 ZXDCQ2QGD7 858 aaPredicted RBP16.12■□□□□ 0.17
VIM-208ENST00000497849 TMCO3Q6UWJ1 677 aa16.12■□□□□ 0.17
VIM-208ENST00000497849 WASH2PQ6VEQ5 465 aa16.12■□□□□ 0.17
VIM-208ENST00000497849 APTXQ7Z2E3 356 aaKnown RBP16.12■□□□□ 0.17
VIM-208ENST00000497849 KMT5CQ86Y97 462 aa16.12■□□□□ 0.17
VIM-208ENST00000497849 PSTKQ8IV42 348 aaKnown RBP16.12■□□□□ 0.17
VIM-208ENST00000497849 ZNF547Q8IVP9 402 aa16.12■□□□□ 0.17
VIM-208ENST00000497849 DSELQ8IZU8 1212 aa16.12■□□□□ 0.17
VIM-208ENST00000497849 ATPAF2Q8N5M1 289 aa16.12■□□□□ 0.17
VIM-208ENST00000497849 NSMCE1Q8WV22 266 aa16.12■□□□□ 0.17
VIM-208ENST00000497849 EID2BQ96D98 161 aa16.12■□□□□ 0.17
VIM-208ENST00000497849 CXorf40BQ96DE9 158 aa16.12■□□□□ 0.17
VIM-208ENST00000497849 TIMM29Q9BSF4 260 aa16.12■□□□□ 0.17
VIM-208ENST00000497849 TUBB2BQ9BVA1 445 aa16.12■□□□□ 0.17
VIM-208ENST00000497849 ILKAPQ9H0C8 392 aaPredicted RBP16.12■□□□□ 0.17
VIM-208ENST00000497849 ZWILCHQ9H900 591 aa16.12■□□□□ 0.17
VIM-208ENST00000497849 KCND1Q9NSA2 647 aa16.12■□□□□ 0.17
VIM-208ENST00000497849 WDR37Q9Y2I8 494 aa16.12■□□□□ 0.17
VIM-208ENST00000497849 PCDHGA10Q9Y5H3 936 aa16.12■□□□□ 0.17
VIM-208ENST00000497849 PKDREJQ9NTG1 2253 aa16.11■□□□□ 0.17
VIM-208ENST00000497849 CCDC88CQ9P219 2028 aa16.11■□□□□ 0.17
Retrieved 100 of 20,778 RNA–protein pairs in 20.2 ms