RNA–Protein interactions for RNA: ENST00000495981.5

VPS52-222, Transcript of VPS52, GARP complex subunit, human

TSL 1 (best)

Gene VPS52, Length 743 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
VPS52-222	ENST00000495981	HHLA1	C9JL84	531 aa		4.37	□□□□□ -1.71
VPS52-222	ENST00000495981		E7EVH7	732 aa		4.37	□□□□□ -1.71
VPS52-222	ENST00000495981	AGPS	O00116	658 aa		4.37	□□□□□ -1.71
VPS52-222	ENST00000495981	SLC9A3R1	O14745	358 aa	Predicted RBP	4.37	□□□□□ -1.71
VPS52-222	ENST00000495981	RRP8	O43159	456 aa	Known RBP	4.37	□□□□□ -1.71
VPS52-222	ENST00000495981	SUV39H1	O43463	412 aa		4.37	□□□□□ -1.71
VPS52-222	ENST00000495981	PIAS2	O75928	621 aa		4.37	□□□□□ -1.71
VPS52-222	ENST00000495981	BEST1	O76090	585 aa		4.37	□□□□□ -1.71
VPS52-222	ENST00000495981	TMEM63A	O94886	807 aa		4.37	□□□□□ -1.71
VPS52-222	ENST00000495981	RTN3	O95197	1032 aa	Predicted RBP	4.37	□□□□□ -1.71
VPS52-222	ENST00000495981	VNN1	O95497	513 aa		4.37	□□□□□ -1.71
VPS52-222	ENST00000495981	VIP	P01282	170 aa		4.37	□□□□□ -1.71
VPS52-222	ENST00000495981	IGLV3-19	P01714	112 aa		4.37	□□□□□ -1.71
VPS52-222	ENST00000495981	TNNC2	P02585	160 aa		4.37	□□□□□ -1.71
VPS52-222	ENST00000495981	APOD	P05090	189 aa		4.37	□□□□□ -1.71
VPS52-222	ENST00000495981	RNF224	P0DH78	156 aa		4.37	□□□□□ -1.71
VPS52-222	ENST00000495981	DLAT	P10515	647 aa	Known RBP	4.37	□□□□□ -1.71
VPS52-222	ENST00000495981	MBL2	P11226	248 aa	Predicted RBP	4.37	□□□□□ -1.71
VPS52-222	ENST00000495981	CCDC130	P13994	396 aa		4.37	□□□□□ -1.71
VPS52-222	ENST00000495981	HOXB2	P14652	356 aa		4.37	□□□□□ -1.71
VPS52-222	ENST00000495981	CHRM3	P20309	590 aa		4.37	□□□□□ -1.71
VPS52-222	ENST00000495981	ANXA13	P27216	316 aa		4.37	□□□□□ -1.71
VPS52-222	ENST00000495981	PPP3CC	P48454	512 aa		4.37	□□□□□ -1.71
VPS52-222	ENST00000495981	CASP4	P49662	377 aa		4.37	□□□□□ -1.71
VPS52-222	ENST00000495981	CYP2J2	P51589	502 aa		4.37	□□□□□ -1.71
VPS52-222	ENST00000495981	DRG2	P55039	364 aa	Known RBP	4.37	□□□□□ -1.71
VPS52-222	ENST00000495981	MYL6	P60660	151 aa		4.37	□□□□□ -1.71
VPS52-222	ENST00000495981	RIN1	Q13671	783 aa		4.37	□□□□□ -1.71
VPS52-222	ENST00000495981	ENPP2	Q13822	863 aa		4.37	□□□□□ -1.71
VPS52-222	ENST00000495981	IQCB1	Q15051	598 aa		4.37	□□□□□ -1.71
VPS52-222	ENST00000495981	ZMAT1	Q5H9K5	638 aa		4.37	□□□□□ -1.71
VPS52-222	ENST00000495981	KCNT1	Q5JUK3	1230 aa		4.37	□□□□□ -1.71
VPS52-222	ENST00000495981	C1orf220	Q5T0J3	134 aa		4.37	□□□□□ -1.71
VPS52-222	ENST00000495981	C10orf76	Q5T2E6	689 aa		4.37	□□□□□ -1.71
VPS52-222	ENST00000495981	ATXN7L2	Q5T6C5	722 aa	Predicted RBP	4.37	□□□□□ -1.71
VPS52-222	ENST00000495981	XP32	Q5T750	250 aa		4.37	□□□□□ -1.71
VPS52-222	ENST00000495981	ATPAF1	Q5TC12	328 aa	Predicted RBP	4.37	□□□□□ -1.71
VPS52-222	ENST00000495981	ARMC3	Q5W041	872 aa		4.37	□□□□□ -1.71
VPS52-222	ENST00000495981	ATG16L1	Q676U5	607 aa		4.37	□□□□□ -1.71
VPS52-222	ENST00000495981	SHC4	Q6S5L8	630 aa		4.37	□□□□□ -1.71
VPS52-222	ENST00000495981	SCARA5	Q6ZMJ2	495 aa		4.37	□□□□□ -1.71
VPS52-222	ENST00000495981	CCDC73	Q6ZRK6	1079 aa		4.37	□□□□□ -1.71
VPS52-222	ENST00000495981	DOK3	Q7L591	496 aa		4.37	□□□□□ -1.71
VPS52-222	ENST00000495981	TMEM25	Q86YD3	366 aa		4.37	□□□□□ -1.71
VPS52-222	ENST00000495981	GPR135	Q8IZ08	494 aa		4.37	□□□□□ -1.71
VPS52-222	ENST00000495981	NRSN1	Q8IZ57	195 aa		4.37	□□□□□ -1.71
VPS52-222	ENST00000495981	FITM2	Q8N6M3	262 aa		4.37	□□□□□ -1.71
VPS52-222	ENST00000495981	TRIML1	Q8N9V2	468 aa		4.37	□□□□□ -1.71
VPS52-222	ENST00000495981	KIAA0895	Q8NCT3	520 aa		4.37	□□□□□ -1.71
VPS52-222	ENST00000495981	CCDC26	Q8TAB7	109 aa		4.37	□□□□□ -1.71
VPS52-222	ENST00000495981	CEP76	Q8TAP6	659 aa		4.37	□□□□□ -1.71
VPS52-222	ENST00000495981	CREB3L4	Q8TEY5	395 aa		4.37	□□□□□ -1.71
VPS52-222	ENST00000495981	CACTIN	Q8WUQ7	758 aa	Known RBP	4.37	□□□□□ -1.71
VPS52-222	ENST00000495981	EXOC4	Q96A65	974 aa		4.37	□□□□□ -1.71
VPS52-222	ENST00000495981	OTUB2	Q96DC9	234 aa		4.37	□□□□□ -1.71
VPS52-222	ENST00000495981	SMARCD1	Q96GM5	515 aa		4.37	□□□□□ -1.71
VPS52-222	ENST00000495981	TMEM176A	Q96HP8	235 aa		4.37	□□□□□ -1.71
VPS52-222	ENST00000495981	SLITRK1	Q96PX8	696 aa		4.37	□□□□□ -1.71
VPS52-222	ENST00000495981	WDR24	Q96S15	920 aa		4.37	□□□□□ -1.71
VPS52-222	ENST00000495981	KCNK16	Q96T55	309 aa		4.37	□□□□□ -1.71
VPS52-222	ENST00000495981	PNKP	Q96T60	521 aa		4.37	□□□□□ -1.71
VPS52-222	ENST00000495981	SMO	Q99835	787 aa		4.37	□□□□□ -1.71
VPS52-222	ENST00000495981	CHODL	Q9H9P2	273 aa		4.37	□□□□□ -1.71
VPS52-222	ENST00000495981	CSNK1G1	Q9HCP0	422 aa		4.37	□□□□□ -1.71
VPS52-222	ENST00000495981	DMAP1	Q9NPF5	467 aa	Predicted RBP	4.37	□□□□□ -1.71
VPS52-222	ENST00000495981	IRAK4	Q9NWZ3	460 aa		4.37	□□□□□ -1.71
VPS52-222	ENST00000495981	EHD2	Q9NZN4	543 aa		4.37	□□□□□ -1.71
VPS52-222	ENST00000495981	TRPM5	Q9NZQ8	1165 aa		4.37	□□□□□ -1.71
VPS52-222	ENST00000495981	C19orf53	Q9UNZ5	99 aa	Predicted RBP	4.37	□□□□□ -1.71
VPS52-222	ENST00000495981	RAD54B	Q9Y620	910 aa		4.37	□□□□□ -1.71
VPS52-222	ENST00000495981	PMS2P1	A4D2B8	440 aa		4.36	□□□□□ -1.71
VPS52-222	ENST00000495981	ZNF233	A6NK53	670 aa		4.36	□□□□□ -1.71
VPS52-222	ENST00000495981	C10orf142	B7Z368	130 aa		4.36	□□□□□ -1.71
VPS52-222	ENST00000495981	NEDD8-MDP1	E9PL57	170 aa		4.36	□□□□□ -1.71
VPS52-222	ENST00000495981	STX16-NPEPL1	H3BU86	382 aa		4.36	□□□□□ -1.71
VPS52-222	ENST00000495981	STX16	O14662	325 aa		4.36	□□□□□ -1.71
VPS52-222	ENST00000495981	MDM4	O15151	490 aa		4.36	□□□□□ -1.71
VPS52-222	ENST00000495981	CD3EAP	O15446	510 aa	Known RBP	4.36	□□□□□ -1.71
VPS52-222	ENST00000495981	AP5Z1	O43299	807 aa		4.36	□□□□□ -1.71
VPS52-222	ENST00000495981	PENK	P01210	267 aa	Predicted RBP	4.36	□□□□□ -1.71
VPS52-222	ENST00000495981	AFP	P02771	609 aa	Known RBP	4.36	□□□□□ -1.71
VPS52-222	ENST00000495981	IRF1	P10914	325 aa		4.36	□□□□□ -1.71
VPS52-222	ENST00000495981	SYT1	P21579	422 aa		4.36	□□□□□ -1.71
VPS52-222	ENST00000495981	PRKCH	P24723	683 aa		4.36	□□□□□ -1.71
VPS52-222	ENST00000495981	YWHAQ	P27348	245 aa		4.36	□□□□□ -1.71
VPS52-222	ENST00000495981	ABCD3	P28288	659 aa		4.36	□□□□□ -1.71
VPS52-222	ENST00000495981	CASP1	P29466	404 aa		4.36	□□□□□ -1.71
VPS52-222	ENST00000495981	AKT1	P31749	480 aa		4.36	□□□□□ -1.71
VPS52-222	ENST00000495981	HTR7	P34969	479 aa		4.36	□□□□□ -1.71
VPS52-222	ENST00000495981	DPP6	P42658	865 aa		4.36	□□□□□ -1.71
VPS52-222	ENST00000495981	TNFRSF4	P43489	277 aa		4.36	□□□□□ -1.71
VPS52-222	ENST00000495981	TNNC1	P63316	161 aa		4.36	□□□□□ -1.71
VPS52-222	ENST00000495981	KHDRBS1	Q07666	443 aa	Known RBP eCLIP	4.36	□□□□□ -1.71
VPS52-222	ENST00000495981	INCA1	Q0VD86	236 aa		4.36	□□□□□ -1.71
VPS52-222	ENST00000495981	GPS1	Q13098	491 aa		4.36	□□□□□ -1.71
VPS52-222	ENST00000495981	DNAJC3	Q13217	504 aa		4.36	□□□□□ -1.71
VPS52-222	ENST00000495981	SLC39A14	Q15043	492 aa		4.36	□□□□□ -1.71
VPS52-222	ENST00000495981	HLA-B	Q31612	363 aa		4.36	□□□□□ -1.71
VPS52-222	ENST00000495981	ZNF699	Q32M78	642 aa		4.36	□□□□□ -1.71
VPS52-222	ENST00000495981	TBC1D25	Q3MII6	688 aa		4.36	□□□□□ -1.71

Retrieved 100 of 20,778 RNA–protein pairs in 26.3 ms