RNA–Protein interactions for RNA: ENST00000493468.6

PRPF40A-211, Transcript of pre-mRNA processing factor 40 homolog A, humanhuman

TSL 1 (best)

Gene PRPF40A, Length 1,043 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40A-211ENST00000493468 VEGFDO43915 354 aa13.96□□□□□ -0.17
PRPF40A-211ENST00000493468 SCRG1O75711 98 aa13.96□□□□□ -0.17
PRPF40A-211ENST00000493468 AMPD1P23109 780 aa13.96□□□□□ -0.17
PRPF40A-211ENST00000493468 DCDC1P59894 354 aa13.96□□□□□ -0.17
PRPF40A-211ENST00000493468 PPP1CAP62136 330 aa13.96□□□□□ -0.17
PRPF40A-211ENST00000493468 IHHQ14623 411 aa13.96□□□□□ -0.17
PRPF40A-211ENST00000493468 KCNAB1Q14722 419 aa13.96□□□□□ -0.17
PRPF40A-211ENST00000493468 DPCR1Q3MIW9 517 aa13.96□□□□□ -0.17
PRPF40A-211ENST00000493468 PLEKHN1Q494U1 663 aaPredicted RBP13.96□□□□□ -0.17
PRPF40A-211ENST00000493468 TDRD12Q587J7 1177 aaKnown RBP13.96□□□□□ -0.17
PRPF40A-211ENST00000493468 ANKRD20A8PQ5CZ79 823 aa13.96□□□□□ -0.17
PRPF40A-211ENST00000493468 CRB2Q5IJ48 1285 aa13.96□□□□□ -0.17
PRPF40A-211ENST00000493468 KLHL35Q6PF15 583 aa13.96□□□□□ -0.17
PRPF40A-211ENST00000493468 IGFL3Q6UXB1 125 aa13.96□□□□□ -0.17
PRPF40A-211ENST00000493468 POLNQ7Z5Q5 900 aa13.96□□□□□ -0.17
PRPF40A-211ENST00000493468 ADGRG6Q86SQ4 1221 aa13.96□□□□□ -0.17
PRPF40A-211ENST00000493468 LRRTM4Q86VH4 590 aa13.96□□□□□ -0.17
PRPF40A-211ENST00000493468 ENDOVQ8N8Q3 282 aaKnown RBP13.96□□□□□ -0.17
PRPF40A-211ENST00000493468 CCHCR1Q8TD31 782 aa13.96□□□□□ -0.17
PRPF40A-211ENST00000493468 CXorf40BQ96DE9 158 aa13.96□□□□□ -0.17
PRPF40A-211ENST00000493468 CSPG4P5Q96PW8 444 aa13.96□□□□□ -0.17
PRPF40A-211ENST00000493468 ZSCAN5AQ9BUG6 496 aa13.96□□□□□ -0.17
PRPF40A-211ENST00000493468 NLNQ9BYT8 704 aa13.96□□□□□ -0.17
PRPF40A-211ENST00000493468 CHST8Q9H2A9 424 aa13.96□□□□□ -0.17
PRPF40A-211ENST00000493468 HAUS2Q9NVX0 235 aa13.96□□□□□ -0.17
PRPF40A-211ENST00000493468 TCFL5Q9UL49 500 aa13.96□□□□□ -0.17
PRPF40A-211ENST00000493468 CHKBQ9Y259 395 aa13.96□□□□□ -0.17
PRPF40A-211ENST00000493468 PCM1Q15154 2024 aa13.96□□□□□ -0.17
PRPF40A-211ENST00000493468 TLCD2A6NGC4 264 aa13.95□□□□□ -0.18
PRPF40A-211ENST00000493468 OR52A4PA6NMU1 304 aa13.95□□□□□ -0.18
PRPF40A-211ENST00000493468 SLC25A14O95258 325 aaPredicted RBP13.95□□□□□ -0.18
PRPF40A-211ENST00000493468 KLK3P07288 261 aaPredicted RBP13.95□□□□□ -0.18
PRPF40A-211ENST00000493468 SPTBP11277 2137 aa13.95□□□□□ -0.18
PRPF40A-211ENST00000493468 IDSP22304 550 aa13.95□□□□□ -0.18
PRPF40A-211ENST00000493468 FECHP22830 423 aa13.95□□□□□ -0.18
PRPF40A-211ENST00000493468 PCK1P35558 622 aa13.95□□□□□ -0.18
PRPF40A-211ENST00000493468 PER3P56645 1201 aa13.95□□□□□ -0.18
PRPF40A-211ENST00000493468 HSD11B2P80365 405 aa13.95□□□□□ -0.18
PRPF40A-211ENST00000493468 SEPT7Q16181 437 aaKnown RBP13.95□□□□□ -0.18
PRPF40A-211ENST00000493468 FKBP15Q5T1M5 1219 aa13.95□□□□□ -0.18
PRPF40A-211ENST00000493468 CRTC3Q6UUV7 619 aa13.95□□□□□ -0.18
PRPF40A-211ENST00000493468 TMEM126BQ8IUX1 230 aa13.95□□□□□ -0.18
PRPF40A-211ENST00000493468 DSELQ8IZU8 1212 aa13.95□□□□□ -0.18
PRPF40A-211ENST00000493468 CARFQ8N187 725 aa13.95□□□□□ -0.18
PRPF40A-211ENST00000493468 CISD2Q8N5K1 135 aaKnown RBP13.95□□□□□ -0.18
PRPF40A-211ENST00000493468 ST6GALNAC3Q8NDV1 305 aa13.95□□□□□ -0.18
PRPF40A-211ENST00000493468 LPCAT1Q8NF37 534 aa13.95□□□□□ -0.18
PRPF40A-211ENST00000493468 MAML1Q92585 1016 aa13.95□□□□□ -0.18
PRPF40A-211ENST00000493468 FATE1Q969F0 183 aa13.95□□□□□ -0.18
PRPF40A-211ENST00000493468 ZNF501Q96CX3 271 aaPredicted RBP13.95□□□□□ -0.18
PRPF40A-211ENST00000493468 PCDH9Q9HC56 1237 aa13.95□□□□□ -0.18
PRPF40A-211ENST00000493468 ITPR3Q14573 2671 aa13.94□□□□□ -0.18
PRPF40A-211ENST00000493468 HEATR9A2RTY3 570 aa13.94□□□□□ -0.18
PRPF40A-211ENST00000493468 KLHL41O60662 606 aa13.94□□□□□ -0.18
PRPF40A-211ENST00000493468 RPL10P27635 214 aaKnown RBP13.94□□□□□ -0.18
PRPF40A-211ENST00000493468 ARL4DP49703 201 aa13.94□□□□□ -0.18
PRPF40A-211ENST00000493468 DSC2Q02487 901 aa13.94□□□□□ -0.18
PRPF40A-211ENST00000493468 ITKQ08881 620 aa13.94□□□□□ -0.18
PRPF40A-211ENST00000493468 PLA2G4EQ3MJ16 856 aa13.94□□□□□ -0.18
PRPF40A-211ENST00000493468 CT47A1Q5JQC4 288 aaPredicted RBP13.94□□□□□ -0.18
PRPF40A-211ENST00000493468 PLEKHS1Q5SXH7 462 aa13.94□□□□□ -0.18
PRPF40A-211ENST00000493468 ZNF547Q8IVP9 402 aa13.94□□□□□ -0.18
PRPF40A-211ENST00000493468 TRAM1L1Q8N609 369 aa13.94□□□□□ -0.18
PRPF40A-211ENST00000493468 ZBTB2Q8N680 514 aa13.94□□□□□ -0.18
PRPF40A-211ENST00000493468 SLC38A9Q8NBW4 561 aa13.94□□□□□ -0.18
PRPF40A-211ENST00000493468 ARRDC2Q8TBH0 407 aa13.94□□□□□ -0.18
PRPF40A-211ENST00000493468 UBE2Q2Q8WVN8 375 aa13.94□□□□□ -0.18
PRPF40A-211ENST00000493468 GLYATL1Q969I3 302 aa13.94□□□□□ -0.18
PRPF40A-211ENST00000493468 SGSM3Q96HU1 749 aa13.94□□□□□ -0.18
PRPF40A-211ENST00000493468 MAP3K3Q99759 626 aa13.94□□□□□ -0.18
PRPF40A-211ENST00000493468 SPATA16Q9BXB7 569 aa13.94□□□□□ -0.18
PRPF40A-211ENST00000493468 RUBCNLQ9H714 662 aa13.94□□□□□ -0.18
PRPF40A-211ENST00000493468 KCND1Q9NSA2 647 aa13.94□□□□□ -0.18
PRPF40A-211ENST00000493468 DNAJC16Q9Y2G8 782 aa13.94□□□□□ -0.18
PRPF40A-211ENST00000493468 HIVEP1P15822 2718 aa13.94□□□□□ -0.18
PRPF40A-211ENST00000493468 ZGRF1Q86YA3 2104 aa13.93□□□□□ -0.18
PRPF40A-211ENST00000493468 ARHGAP10A1A4S6 786 aa13.93□□□□□ -0.18
PRPF40A-211ENST00000493468 A6NL46 340 aa13.93□□□□□ -0.18
PRPF40A-211ENST00000493468 ANKRD66B4E2M5 251 aa13.93□□□□□ -0.18
PRPF40A-211ENST00000493468 MEN1O00255 615 aa13.93□□□□□ -0.18
PRPF40A-211ENST00000493468 ATMINO43313 823 aaPredicted RBP13.93□□□□□ -0.18
PRPF40A-211ENST00000493468 ALPPP05187 535 aa13.93□□□□□ -0.18
PRPF40A-211ENST00000493468 CAPN1P07384 714 aa13.93□□□□□ -0.18
PRPF40A-211ENST00000493468 TPM2P07951 284 aa13.93□□□□□ -0.18
PRPF40A-211ENST00000493468 CCDC172P0C7W6 258 aa13.93□□□□□ -0.18
PRPF40A-211ENST00000493468 VCLP18206 1134 aa13.93□□□□□ -0.18
PRPF40A-211ENST00000493468 IL4RP24394 825 aa13.93□□□□□ -0.18
PRPF40A-211ENST00000493468 IL1R2P27930 398 aa13.93□□□□□ -0.18
PRPF40A-211ENST00000493468 RORAP35398 523 aa13.93□□□□□ -0.18
PRPF40A-211ENST00000493468 HALP42357 657 aa13.93□□□□□ -0.18
PRPF40A-211ENST00000493468 CDK18Q07002 472 aa13.93□□□□□ -0.18
PRPF40A-211ENST00000493468 KRT31Q15323 416 aa13.93□□□□□ -0.18
PRPF40A-211ENST00000493468 ZRSR2Q15696 482 aaKnown RBP13.93□□□□□ -0.18
PRPF40A-211ENST00000493468 QPCTQ16769 361 aa13.93□□□□□ -0.18
PRPF40A-211ENST00000493468 KRTAP21-3Q3LHN1 58 aa13.93□□□□□ -0.18
PRPF40A-211ENST00000493468 BOLA3Q53S33 107 aa13.93□□□□□ -0.18
PRPF40A-211ENST00000493468 DNTTIP2Q5QJE6 756 aaKnown RBP13.93□□□□□ -0.18
PRPF40A-211ENST00000493468 ZNF648Q5T619 568 aaPredicted RBP13.93□□□□□ -0.18
PRPF40A-211ENST00000493468 LYPLAL1Q5VWZ2 237 aa13.93□□□□□ -0.18
PRPF40A-211ENST00000493468 TIGD7Q6NT04 549 aaPredicted RBP13.93□□□□□ -0.18
Retrieved 100 of 20,778 RNA–protein pairs in 42.2 ms