RNA–Protein interactions for RNA: ENST00000493341.1

VPS13A-212, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 2

Gene VPS13A, Length 2,001 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-212ENST00000493341 KIR2DS5A0A0G2JLQ3 304 aa4.6□□□□□ -1.67
VPS13A-212ENST00000493341 KIR2DS3K7RE56 304 aa4.6□□□□□ -1.67
VPS13A-212ENST00000493341 SSX4O60224 188 aa4.6□□□□□ -1.67
VPS13A-212ENST00000493341 TSPAN1O60635 241 aa4.6□□□□□ -1.67
VPS13A-212ENST00000493341 TYMPP19971 482 aa4.6□□□□□ -1.67
VPS13A-212ENST00000493341 MYF6P23409 242 aa4.6□□□□□ -1.67
VPS13A-212ENST00000493341 ITGB8P26012 769 aa4.6□□□□□ -1.67
VPS13A-212ENST00000493341 COMPP49747 757 aaPredicted RBP4.6□□□□□ -1.67
VPS13A-212ENST00000493341 KIAA1024LP59773 190 aa4.6□□□□□ -1.67
VPS13A-212ENST00000493341 PTENP60484 403 aa4.6□□□□□ -1.67
VPS13A-212ENST00000493341 SNRPEP62304 92 aaKnown RBP4.6□□□□□ -1.67
VPS13A-212ENST00000493341 PLP2Q04941 152 aa4.6□□□□□ -1.67
VPS13A-212ENST00000493341 MAD2L1Q13257 205 aaPredicted RBP4.6□□□□□ -1.67
VPS13A-212ENST00000493341 ZNF268Q14587 947 aaPredicted RBP4.6□□□□□ -1.67
VPS13A-212ENST00000493341 PROSER3Q2NL68 480 aa4.6□□□□□ -1.67
VPS13A-212ENST00000493341 ZXDCQ2QGD7 858 aaPredicted RBP4.6□□□□□ -1.67
VPS13A-212ENST00000493341 MDH1BQ5I0G3 518 aa4.6□□□□□ -1.67
VPS13A-212ENST00000493341 ETFRF1Q6IPR1 90 aa4.6□□□□□ -1.67
VPS13A-212ENST00000493341 FAM198BQ6UWH4 519 aa4.6□□□□□ -1.67
VPS13A-212ENST00000493341 ANKRD13BQ86YJ7 626 aa4.6□□□□□ -1.67
VPS13A-212ENST00000493341 GPSM1Q86YR5 675 aa4.6□□□□□ -1.67
VPS13A-212ENST00000493341 RTL3Q8N8U3 475 aaKnown RBP4.6□□□□□ -1.67
VPS13A-212ENST00000493341 LPCAT1Q8NF37 534 aa4.6□□□□□ -1.67
VPS13A-212ENST00000493341 NSMAFQ92636 917 aa4.6□□□□□ -1.67
VPS13A-212ENST00000493341 PRMT6Q96LA8 375 aaPredicted RBP4.6□□□□□ -1.67
VPS13A-212ENST00000493341 SEPHS2Q99611 448 aa4.6□□□□□ -1.67
VPS13A-212ENST00000493341 SEMA3CQ99985 751 aa4.6□□□□□ -1.67
VPS13A-212ENST00000493341 SH2D3AQ9BRG2 576 aa4.6□□□□□ -1.67
VPS13A-212ENST00000493341 POLDIP3Q9BY77 421 aaKnown RBP4.6□□□□□ -1.67
VPS13A-212ENST00000493341 IL19Q9UHD0 177 aa4.6□□□□□ -1.67
VPS13A-212ENST00000493341 CHKBQ9Y259 395 aa4.6□□□□□ -1.67
VPS13A-212ENST00000493341 ZNF541Q9H0D2 1346 aa4.59□□□□□ -1.67
VPS13A-212ENST00000493341 COL4A3Q01955 1670 aa4.59□□□□□ -1.67
VPS13A-212ENST00000493341 YDJCA8MPS7 323 aa4.59□□□□□ -1.67
VPS13A-212ENST00000493341 B4DGG1 531 aa4.59□□□□□ -1.67
VPS13A-212ENST00000493341 J3QR06 171 aa4.59□□□□□ -1.67
VPS13A-212ENST00000493341 K7ESM1 405 aa4.59□□□□□ -1.67
VPS13A-212ENST00000493341 SLC30A4O14863 429 aa4.59□□□□□ -1.67
VPS13A-212ENST00000493341 SLC16A5O15375 505 aa4.59□□□□□ -1.67
VPS13A-212ENST00000493341 XRCC3O43542 346 aa4.59□□□□□ -1.67
VPS13A-212ENST00000493341 MAOAP21397 527 aa4.59□□□□□ -1.67
VPS13A-212ENST00000493341 CDK3Q00526 305 aa4.59□□□□□ -1.67
VPS13A-212ENST00000493341 MELKQ14680 651 aa4.59□□□□□ -1.67
VPS13A-212ENST00000493341 SLC9C1Q4G0N8 1177 aa4.59□□□□□ -1.67
VPS13A-212ENST00000493341 EPHA10Q5JZY3 1008 aa4.59□□□□□ -1.67
VPS13A-212ENST00000493341 FNDC7Q5VTL7 733 aa4.59□□□□□ -1.67
VPS13A-212ENST00000493341 ZDHHC20Q5W0Z9 365 aa4.59□□□□□ -1.67
VPS13A-212ENST00000493341 DUS1LQ6P1R4 473 aaKnown RBP4.59□□□□□ -1.67
VPS13A-212ENST00000493341 LCA5Q86VQ0 697 aa4.59□□□□□ -1.67
VPS13A-212ENST00000493341 DSELQ8IZU8 1212 aa4.59□□□□□ -1.67
VPS13A-212ENST00000493341 C9orf43Q8TAL5 461 aaPredicted RBP4.59□□□□□ -1.67
VPS13A-212ENST00000493341 HASPINQ8TF76 798 aa4.59□□□□□ -1.67
VPS13A-212ENST00000493341 SLC9A6Q92581 669 aa4.59□□□□□ -1.67
VPS13A-212ENST00000493341 ORAI1Q96D31 301 aa4.59□□□□□ -1.67
VPS13A-212ENST00000493341 OTUB1Q96FW1 271 aaPredicted RBP4.59□□□□□ -1.67
VPS13A-212ENST00000493341 LRRC3BQ96PB8 259 aa4.59□□□□□ -1.67
VPS13A-212ENST00000493341 MSTO1Q9BUK6 570 aa4.59□□□□□ -1.67
VPS13A-212ENST00000493341 FNDC11Q9BVV2 318 aa4.59□□□□□ -1.67
VPS13A-212ENST00000493341 TRIM7Q9C029 511 aa4.59□□□□□ -1.67
VPS13A-212ENST00000493341 ZNF350Q9GZX5 532 aa4.59□□□□□ -1.67
VPS13A-212ENST00000493341 FAM234AQ9H0X4 552 aa4.59□□□□□ -1.67
VPS13A-212ENST00000493341 DNAJC17Q9NVM6 304 aaKnown RBP4.59□□□□□ -1.67
VPS13A-212ENST00000493341 SH3BGRL2Q9UJC5 107 aa4.59□□□□□ -1.67
VPS13A-212ENST00000493341 APPL1Q9UKG1 709 aa4.59□□□□□ -1.67
VPS13A-212ENST00000493341 AGO2Q9UKV8 859 aaKnown RBP4.59□□□□□ -1.67
VPS13A-212ENST00000493341 ACSL5Q9ULC5 683 aa4.59□□□□□ -1.67
VPS13A-212ENST00000493341 ANKUB1A6NFN9 424 aa4.58□□□□□ -1.68
VPS13A-212ENST00000493341 KCNU1A8MYU2 1149 aa4.58□□□□□ -1.68
VPS13A-212ENST00000493341 PPP6CO00743 305 aa4.58□□□□□ -1.68
VPS13A-212ENST00000493341 CLDN4O14493 209 aa4.58□□□□□ -1.68
VPS13A-212ENST00000493341 AKAP3O75969 853 aa4.58□□□□□ -1.68
VPS13A-212ENST00000493341 LBPP18428 481 aa4.58□□□□□ -1.68
VPS13A-212ENST00000493341 GPD1P21695 349 aa4.58□□□□□ -1.68
VPS13A-212ENST00000493341 HRH2P25021 359 aa4.58□□□□□ -1.68
VPS13A-212ENST00000493341 ME1P48163 572 aa4.58□□□□□ -1.68
VPS13A-212ENST00000493341 LUMP51884 338 aaPredicted RBP4.58□□□□□ -1.68
VPS13A-212ENST00000493341 LIMK1P53667 647 aa4.58□□□□□ -1.68
VPS13A-212ENST00000493341 STARD6P59095 220 aa4.58□□□□□ -1.68
VPS13A-212ENST00000493341 LAMB3Q13751 1172 aa4.58□□□□□ -1.68
VPS13A-212ENST00000493341 SLC39A14Q15043 492 aa4.58□□□□□ -1.68
VPS13A-212ENST00000493341 RPS6KA1Q15418 735 aa4.58□□□□□ -1.68
VPS13A-212ENST00000493341 SMTNL2Q2TAL5 461 aa4.58□□□□□ -1.68
VPS13A-212ENST00000493341 LRRC73Q5JTD7 316 aa4.58□□□□□ -1.68
VPS13A-212ENST00000493341 C6orf10Q5SRN2 563 aa4.58□□□□□ -1.68
VPS13A-212ENST00000493341 UNC5DQ6UXZ4 953 aa4.58□□□□□ -1.68
VPS13A-212ENST00000493341 ZNF813Q6ZN06 617 aa4.58□□□□□ -1.68
VPS13A-212ENST00000493341 LCNL1Q6ZST4 164 aa4.58□□□□□ -1.68
VPS13A-212ENST00000493341 TPRG1Q6ZUI0 275 aa4.58□□□□□ -1.68
VPS13A-212ENST00000493341 ANKRD13CQ8N6S4 541 aa4.58□□□□□ -1.68
VPS13A-212ENST00000493341 SLC35F5Q8WV83 523 aa4.58□□□□□ -1.68
VPS13A-212ENST00000493341 DVL3Q92997 716 aaPredicted RBP4.58□□□□□ -1.68
VPS13A-212ENST00000493341 SLAMF9Q96A28 289 aa4.58□□□□□ -1.68
VPS13A-212ENST00000493341 STAMBPL1Q96FJ0 436 aa4.58□□□□□ -1.68
VPS13A-212ENST00000493341 SFXN2Q96NB2 322 aa4.58□□□□□ -1.68
VPS13A-212ENST00000493341 GAL3ST4Q96RP7 486 aa4.58□□□□□ -1.68
VPS13A-212ENST00000493341 GFM1Q96RP9 751 aaKnown RBP4.58□□□□□ -1.68
VPS13A-212ENST00000493341 TMEM79Q9BSE2 394 aa4.58□□□□□ -1.68
VPS13A-212ENST00000493341 HAUS8Q9BT25 410 aa4.58□□□□□ -1.68
VPS13A-212ENST00000493341 FN3KQ9H479 309 aa4.58□□□□□ -1.68
VPS13A-212ENST00000493341 MMRN2Q9H8L6 949 aa4.58□□□□□ -1.68
Retrieved 100 of 20,778 RNA–protein pairs in 78.5 ms