RNA–Protein interactions for RNA: ENST00000490398.5

COL9A3-214, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 4

Gene COL9A3, Length 496 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-214ENST00000490398 RAB11FIP2Q7L804 512 aa17.83■□□□□ 0.44
COL9A3-214ENST00000490398 PRELID2Q8N945 189 aa17.83■□□□□ 0.44
COL9A3-214ENST00000490398 GRAMD1AQ96CP6 724 aa17.83■□□□□ 0.44
COL9A3-214ENST00000490398 SLC38A3Q99624 504 aa17.83■□□□□ 0.44
COL9A3-214ENST00000490398 RAB6BQ9NRW1 208 aa17.83■□□□□ 0.44
COL9A3-214ENST00000490398 CPNE7Q9UBL6 633 aa17.83■□□□□ 0.44
COL9A3-214ENST00000490398 FEZ2Q9UHY8 353 aaPredicted RBP17.83■□□□□ 0.44
COL9A3-214ENST00000490398 PCDHGA8Q9Y5G5 932 aa17.83■□□□□ 0.44
COL9A3-214ENST00000490398 ZFC3H1O60293 1989 aaKnown RBP17.82■□□□□ 0.44
COL9A3-214ENST00000490398 UNC13CQ8NB66 2214 aa17.82■□□□□ 0.44
COL9A3-214ENST00000490398 OR52A4PA6NMU1 304 aa17.82■□□□□ 0.44
COL9A3-214ENST00000490398 PDZK1P1A8MUH7 402 aa17.82■□□□□ 0.44
COL9A3-214ENST00000490398 PLD2O14939 933 aa17.82■□□□□ 0.44
COL9A3-214ENST00000490398 SUN1O94901 812 aa17.82■□□□□ 0.44
COL9A3-214ENST00000490398 PBLDP30039 288 aaPredicted RBP17.82■□□□□ 0.44
COL9A3-214ENST00000490398 AKT1P31749 480 aa17.82■□□□□ 0.44
COL9A3-214ENST00000490398 MC4RP32245 332 aa17.82■□□□□ 0.44
COL9A3-214ENST00000490398 SEMA5AQ13591 1074 aa17.82■□□□□ 0.44
COL9A3-214ENST00000490398 LONRF2Q1L5Z9 754 aa17.82■□□□□ 0.44
COL9A3-214ENST00000490398 FNBP1LQ5T0N5 605 aa17.82■□□□□ 0.44
COL9A3-214ENST00000490398 PIM3Q86V86 326 aa17.82■□□□□ 0.44
COL9A3-214ENST00000490398 PIANPQ8IYJ0 282 aa17.82■□□□□ 0.44
COL9A3-214ENST00000490398 FBXO39Q8N4B4 442 aa17.82■□□□□ 0.44
COL9A3-214ENST00000490398 CCDC74BQ96LY2 380 aa17.82■□□□□ 0.44
COL9A3-214ENST00000490398 ZNF578Q96N58 590 aaPredicted RBP17.82■□□□□ 0.44
COL9A3-214ENST00000490398 TTC25Q96NG3 672 aa17.82■□□□□ 0.44
COL9A3-214ENST00000490398 TMEM74Q96NL1 305 aa17.82■□□□□ 0.44
COL9A3-214ENST00000490398 SARS2Q9NP81 518 aaKnown RBP17.82■□□□□ 0.44
COL9A3-214ENST00000490398 NLE1Q9NVX2 485 aaPredicted RBP17.82■□□□□ 0.44
COL9A3-214ENST00000490398 TRMT1Q9NXH9 659 aaKnown RBP17.82■□□□□ 0.44
COL9A3-214ENST00000490398 LOXL2Q9Y4K0 774 aa17.82■□□□□ 0.44
COL9A3-214ENST00000490398 KIR2DS5A0A0G2JLQ3 304 aa17.81■□□□□ 0.44
COL9A3-214ENST00000490398 A0A0G2JNG1 304 aa17.81■□□□□ 0.44
COL9A3-214ENST00000490398 MROH6A6NGR9 719 aa17.81■□□□□ 0.44
COL9A3-214ENST00000490398 OR51F1A6NGY5 319 aa17.81■□□□□ 0.44
COL9A3-214ENST00000490398 CDRT15L2A8MXV6 281 aa17.81■□□□□ 0.44
COL9A3-214ENST00000490398 KIR2DS3K7RE56 304 aa17.81■□□□□ 0.44
COL9A3-214ENST00000490398 PSMD3O43242 534 aa17.81■□□□□ 0.44
COL9A3-214ENST00000490398 NRDCO43847 1150 aa17.81■□□□□ 0.44
COL9A3-214ENST00000490398 CCL4P13236 92 aa17.81■□□□□ 0.44
COL9A3-214ENST00000490398 FDFT1P37268 417 aa17.81■□□□□ 0.44
COL9A3-214ENST00000490398 SQSTM1Q13501 440 aa17.81■□□□□ 0.44
COL9A3-214ENST00000490398 NFE2L1Q14494 772 aa17.81■□□□□ 0.44
COL9A3-214ENST00000490398 KIR2DS5Q14953 304 aa17.81■□□□□ 0.44
COL9A3-214ENST00000490398 TTC27Q6P3X3 843 aa17.81■□□□□ 0.44
COL9A3-214ENST00000490398 DRICH1Q6PGQ1 229 aaPredicted RBP17.81■□□□□ 0.44
COL9A3-214ENST00000490398 IGF2-ASQ6U949 168 aa17.81■□□□□ 0.44
COL9A3-214ENST00000490398 ABRAXAS1Q6UWZ7 409 aa17.81■□□□□ 0.44
COL9A3-214ENST00000490398 SLC9B2Q86UD5 537 aa17.81■□□□□ 0.44
COL9A3-214ENST00000490398 LSMEM2Q8N112 164 aa17.81■□□□□ 0.44
COL9A3-214ENST00000490398 NXPE1Q8N323 547 aa17.81■□□□□ 0.44
COL9A3-214ENST00000490398 SLC35F6Q8N357 371 aa17.81■□□□□ 0.44
COL9A3-214ENST00000490398 LILRA3Q8N6C8 439 aaPredicted RBP17.81■□□□□ 0.44
COL9A3-214ENST00000490398 CDKN2AIPNLQ96HQ2 116 aa17.81■□□□□ 0.44
COL9A3-214ENST00000490398 ZNF778Q96MU6 729 aa17.81■□□□□ 0.44
COL9A3-214ENST00000490398 STRADBQ9C0K7 418 aa17.81■□□□□ 0.44
COL9A3-214ENST00000490398 OGFRQ9NZT2 677 aa17.81■□□□□ 0.44
COL9A3-214ENST00000490398 PISDQ9UG56 409 aa17.81■□□□□ 0.44
COL9A3-214ENST00000490398 SLC2A6Q9UGQ3 507 aa17.81■□□□□ 0.44
COL9A3-214ENST00000490398 CRLS1Q9UJA2 301 aa17.81■□□□□ 0.44
COL9A3-214ENST00000490398 PSMD13Q9UNM6 376 aa17.81■□□□□ 0.44
COL9A3-214ENST00000490398 DRG1Q9Y295 367 aaKnown RBP17.81■□□□□ 0.44
COL9A3-214ENST00000490398 ZNF106Q9H2Y7 1883 aaKnown RBP17.81■□□□□ 0.44
COL9A3-214ENST00000490398 USP27XA6NNY8 438 aa17.8■□□□□ 0.44
COL9A3-214ENST00000490398 MSH3P20585 1137 aa17.8■□□□□ 0.44
COL9A3-214ENST00000490398 IDSP22304 550 aa17.8■□□□□ 0.44
COL9A3-214ENST00000490398 RBMS1P29558 406 aaKnown RBP17.8■□□□□ 0.44
COL9A3-214ENST00000490398 MAPK9P45984 424 aa17.8■□□□□ 0.44
COL9A3-214ENST00000490398 LIMK2P53671 638 aa17.8■□□□□ 0.44
COL9A3-214ENST00000490398 ZRANB3Q5FWF4 1079 aa17.8■□□□□ 0.44
COL9A3-214ENST00000490398 SNX20Q7Z614 316 aa17.8■□□□□ 0.44
COL9A3-214ENST00000490398 AMZ2Q86W34 360 aa17.8■□□□□ 0.44
COL9A3-214ENST00000490398 SERPINA9Q86WD7 417 aa17.8■□□□□ 0.44
COL9A3-214ENST00000490398 CCDC89Q8N998 374 aa17.8■□□□□ 0.44
COL9A3-214ENST00000490398 GPR150Q8NGU9 434 aa17.8■□□□□ 0.44
COL9A3-214ENST00000490398 JPH3Q8WXH2 748 aaPredicted RBP17.8■□□□□ 0.44
COL9A3-214ENST00000490398 PMEPA1Q969W9 287 aa17.8■□□□□ 0.44
COL9A3-214ENST00000490398 PDLIM2Q96JY6 352 aa17.8■□□□□ 0.44
COL9A3-214ENST00000490398 CASS4Q9NQ75 786 aa17.8■□□□□ 0.44
COL9A3-214ENST00000490398 PAK5Q9P286 719 aa17.8■□□□□ 0.44
COL9A3-214ENST00000490398 FAM8A1Q9UBU6 413 aa17.8■□□□□ 0.44
COL9A3-214ENST00000490398 LHX6Q9UPM6 363 aa17.8■□□□□ 0.44
COL9A3-214ENST00000490398 SLC30A1Q9Y6M5 507 aa17.8■□□□□ 0.44
COL9A3-214ENST00000490398 TRBV5-4A0A0C4DH59 114 aa17.79■□□□□ 0.44
COL9A3-214ENST00000490398 TCRBV7S3A2A0A539 114 aa17.79■□□□□ 0.44
COL9A3-214ENST00000490398 CCDC162PA2VCL2 907 aa17.79■□□□□ 0.44
COL9A3-214ENST00000490398 OR5K4A6NMS3 321 aa17.79■□□□□ 0.44
COL9A3-214ENST00000490398 TMX2-CTNND1H3BSU7 103 aa17.79■□□□□ 0.44
COL9A3-214ENST00000490398 H7C0S8 307 aa17.79■□□□□ 0.44
COL9A3-214ENST00000490398 XRCC1P18887 633 aaPredicted RBP17.79■□□□□ 0.44
COL9A3-214ENST00000490398 ITGALP20701 1170 aa17.79■□□□□ 0.44
COL9A3-214ENST00000490398 PSMA3P25788 255 aa17.79■□□□□ 0.44
COL9A3-214ENST00000490398 HADHAP40939 763 aa17.79■□□□□ 0.44
COL9A3-214ENST00000490398 LMAN1P49257 510 aa17.79■□□□□ 0.44
COL9A3-214ENST00000490398 TERF1P54274 439 aa17.79■□□□□ 0.44
COL9A3-214ENST00000490398 ERVPABLB-1P60509 514 aa17.79■□□□□ 0.44
COL9A3-214ENST00000490398 PDE1BQ01064 536 aa17.79■□□□□ 0.44
COL9A3-214ENST00000490398 DMPKQ09013 629 aa17.79■□□□□ 0.44
COL9A3-214ENST00000490398 CDH17Q12864 832 aa17.79■□□□□ 0.44
COL9A3-214ENST00000490398 TRIP13Q15645 432 aaPredicted RBP17.79■□□□□ 0.44
Retrieved 100 of 20,778 RNA–protein pairs in 37.4 ms