RNA–Protein interactions for RNA: ENST00000488520.5

USP4-213, Transcript of ubiquitin specific peptidase 4, human

TSL 3

Gene USP4, Length 1,155 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
USP4-213	ENST00000488520	C16orf96	A6NNT2	1141 aa		8.69	□□□□□ -1.02
USP4-213	ENST00000488520	LMO7DN	F2Z398	122 aa		8.69	□□□□□ -1.02
USP4-213	ENST00000488520	NTN3	O00634	580 aa	Predicted RBP	8.69	□□□□□ -1.02
USP4-213	ENST00000488520	NDC80	O14777	642 aa		8.69	□□□□□ -1.02
USP4-213	ENST00000488520	TSPAN6	O43657	245 aa		8.69	□□□□□ -1.02
USP4-213	ENST00000488520	AP1G1	O43747	822 aa		8.69	□□□□□ -1.02
USP4-213	ENST00000488520	ZNF500	O60304	480 aa	Predicted RBP	8.69	□□□□□ -1.02
USP4-213	ENST00000488520	ECEL1	O95672	775 aa		8.69	□□□□□ -1.02
USP4-213	ENST00000488520	PEX11B	O96011	259 aa		8.69	□□□□□ -1.02
USP4-213	ENST00000488520	KRT14	P02533	472 aa		8.69	□□□□□ -1.02
USP4-213	ENST00000488520	RPLP0	P05388	317 aa	Known RBP	8.69	□□□□□ -1.02
USP4-213	ENST00000488520	HLA-DQB2	P05538	268 aa		8.69	□□□□□ -1.02
USP4-213	ENST00000488520	JMJD7	P0C870	316 aa		8.69	□□□□□ -1.02
USP4-213	ENST00000488520	CTSE	P14091	401 aa		8.69	□□□□□ -1.02
USP4-213	ENST00000488520	ITGB6	P18564	788 aa		8.69	□□□□□ -1.02
USP4-213	ENST00000488520	ITIH2	P19823	946 aa		8.69	□□□□□ -1.02
USP4-213	ENST00000488520	ITIH1	P19827	911 aa		8.69	□□□□□ -1.02
USP4-213	ENST00000488520	ADCY8	P40145	1251 aa		8.69	□□□□□ -1.02
USP4-213	ENST00000488520	CD86	P42081	329 aa		8.69	□□□□□ -1.02
USP4-213	ENST00000488520	FNTA	P49354	379 aa		8.69	□□□□□ -1.02
USP4-213	ENST00000488520	SUOX	P51687	545 aa		8.69	□□□□□ -1.02
USP4-213	ENST00000488520	PFN3	P60673	137 aa		8.69	□□□□□ -1.02
USP4-213	ENST00000488520	RAC1	P63000	192 aa		8.69	□□□□□ -1.02
USP4-213	ENST00000488520	WASHC5	Q12768	1159 aa		8.69	□□□□□ -1.02
USP4-213	ENST00000488520	ZBTB17	Q13105	803 aa		8.69	□□□□□ -1.02
USP4-213	ENST00000488520	MPP3	Q13368	585 aa		8.69	□□□□□ -1.02
USP4-213	ENST00000488520	PTK2B	Q14289	1009 aa		8.69	□□□□□ -1.02
USP4-213	ENST00000488520	MANEA	Q5SRI9	462 aa		8.69	□□□□□ -1.02
USP4-213	ENST00000488520	BRAT1	Q6PJG6	821 aa		8.69	□□□□□ -1.02
USP4-213	ENST00000488520	RD3	Q7Z3Z2	195 aa		8.69	□□□□□ -1.02
USP4-213	ENST00000488520	KDELC2	Q7Z4H8	507 aa		8.69	□□□□□ -1.02
USP4-213	ENST00000488520	CAMK1D	Q8IU85	385 aa		8.69	□□□□□ -1.02
USP4-213	ENST00000488520	LURAP1L	Q8IV03	231 aa		8.69	□□□□□ -1.02
USP4-213	ENST00000488520	HID1	Q8IV36	788 aa		8.69	□□□□□ -1.02
USP4-213	ENST00000488520	PRELID2	Q8N945	189 aa		8.69	□□□□□ -1.02
USP4-213	ENST00000488520	KY	Q8NBH2	561 aa		8.69	□□□□□ -1.02
USP4-213	ENST00000488520	WDR48	Q8TAF3	677 aa		8.69	□□□□□ -1.02
USP4-213	ENST00000488520	CCDC110	Q8TBZ0	833 aa		8.69	□□□□□ -1.02
USP4-213	ENST00000488520	TSACC	Q96A04	125 aa	Predicted RBP	8.69	□□□□□ -1.02
USP4-213	ENST00000488520	RAB7B	Q96AH8	199 aa		8.69	□□□□□ -1.02
USP4-213	ENST00000488520	CENPT	Q96BT3	561 aa		8.69	□□□□□ -1.02
USP4-213	ENST00000488520	LIN37	Q96GY3	246 aa	Predicted RBP	8.69	□□□□□ -1.02
USP4-213	ENST00000488520	SPATA13	Q96N96	652 aa		8.69	□□□□□ -1.02
USP4-213	ENST00000488520	FCRL5	Q96RD9	977 aa		8.69	□□□□□ -1.02
USP4-213	ENST00000488520	GFM1	Q96RP9	751 aa	Known RBP	8.69	□□□□□ -1.02
USP4-213	ENST00000488520	SRPK1	Q96SB4	655 aa	Known RBP	8.69	□□□□□ -1.02
USP4-213	ENST00000488520	RBM15	Q96T37	977 aa	Known RBP eCLIP	8.69	□□□□□ -1.02
USP4-213	ENST00000488520	FSD1L	Q9BXM9	530 aa		8.69	□□□□□ -1.02
USP4-213	ENST00000488520	STRADB	Q9C0K7	418 aa		8.69	□□□□□ -1.02
USP4-213	ENST00000488520	MBNL1	Q9NR56	388 aa	Known RBP	8.69	□□□□□ -1.02
USP4-213	ENST00000488520	STARD5	Q9NSY2	213 aa		8.69	□□□□□ -1.02
USP4-213	ENST00000488520	PHTF1	Q9UMS5	762 aa		8.69	□□□□□ -1.02
USP4-213	ENST00000488520		A0A1W2PQM1	296 aa		8.68	□□□□□ -1.02
USP4-213	ENST00000488520	CTAGE15	A4D2H0	777 aa		8.68	□□□□□ -1.02
USP4-213	ENST00000488520		D6RAR5	112 aa		8.68	□□□□□ -1.02
USP4-213	ENST00000488520	AP3B1	O00203	1094 aa		8.68	□□□□□ -1.02
USP4-213	ENST00000488520	SUV39H1	O43463	412 aa		8.68	□□□□□ -1.02
USP4-213	ENST00000488520	SOCS5	O75159	536 aa		8.68	□□□□□ -1.02
USP4-213	ENST00000488520	PMPCB	O75439	489 aa		8.68	□□□□□ -1.02
USP4-213	ENST00000488520	GHRH	P01286	108 aa		8.68	□□□□□ -1.02
USP4-213	ENST00000488520	CTAGE8	P0CG41	777 aa		8.68	□□□□□ -1.02
USP4-213	ENST00000488520	CYP2A6	P11509	494 aa	Predicted RBP	8.68	□□□□□ -1.02
USP4-213	ENST00000488520	WT1	P19544	449 aa	Predicted RBP	8.68	□□□□□ -1.02
USP4-213	ENST00000488520	ETV5	P41161	510 aa		8.68	□□□□□ -1.02
USP4-213	ENST00000488520	MAPK10	P53779	464 aa		8.68	□□□□□ -1.02
USP4-213	ENST00000488520	INHBC	P55103	352 aa		8.68	□□□□□ -1.02
USP4-213	ENST00000488520	DR1	Q01658	176 aa		8.68	□□□□□ -1.02
USP4-213	ENST00000488520	DSC2	Q02487	901 aa		8.68	□□□□□ -1.02
USP4-213	ENST00000488520	PPARD	Q03181	441 aa		8.68	□□□□□ -1.02
USP4-213	ENST00000488520	CDK18	Q07002	472 aa		8.68	□□□□□ -1.02
USP4-213	ENST00000488520	ELP6	Q0PNE2	266 aa		8.68	□□□□□ -1.02
USP4-213	ENST00000488520	ARHGEF7	Q14155	803 aa		8.68	□□□□□ -1.02
USP4-213	ENST00000488520	TRIP13	Q15645	432 aa	Predicted RBP	8.68	□□□□□ -1.02
USP4-213	ENST00000488520	OASL	Q15646	514 aa	Known RBP	8.68	□□□□□ -1.02
USP4-213	ENST00000488520	TBR1	Q16650	682 aa		8.68	□□□□□ -1.02
USP4-213	ENST00000488520	CYP1B1	Q16678	543 aa		8.68	□□□□□ -1.02
USP4-213	ENST00000488520	SYDE1	Q6ZW31	735 aa	Predicted RBP	8.68	□□□□□ -1.02
USP4-213	ENST00000488520	PCGF5	Q86SE9	256 aa		8.68	□□□□□ -1.02
USP4-213	ENST00000488520	LINC00523	Q86TU6	105 aa		8.68	□□□□□ -1.02
USP4-213	ENST00000488520	CTAGE6	Q86UF2	777 aa		8.68	□□□□□ -1.02
USP4-213	ENST00000488520	ZFAND4	Q86XD8	727 aa		8.68	□□□□□ -1.02
USP4-213	ENST00000488520	PTRH1	Q86Y79	214 aa	Known RBP	8.68	□□□□□ -1.02
USP4-213	ENST00000488520	CTAGE4	Q8IX94	777 aa		8.68	□□□□□ -1.02
USP4-213	ENST00000488520	PGBD5	Q8N414	524 aa		8.68	□□□□□ -1.02
USP4-213	ENST00000488520	CNTD1	Q8N815	330 aa		8.68	□□□□□ -1.02
USP4-213	ENST00000488520		Q8N9G6	341 aa	Predicted RBP	8.68	□□□□□ -1.02
USP4-213	ENST00000488520	DENND6B	Q8NEG7	585 aa		8.68	□□□□□ -1.02
USP4-213	ENST00000488520	SPATA4	Q8NEY3	305 aa		8.68	□□□□□ -1.02
USP4-213	ENST00000488520	JPH3	Q8WXH2	748 aa	Predicted RBP	8.68	□□□□□ -1.02
USP4-213	ENST00000488520	IMP4	Q96G21	291 aa	Known RBP	8.68	□□□□□ -1.02
USP4-213	ENST00000488520	NSUN5	Q96P11	429 aa	Known RBP	8.68	□□□□□ -1.02
USP4-213	ENST00000488520	KRT12	Q99456	494 aa		8.68	□□□□□ -1.02
USP4-213	ENST00000488520	WRAP53	Q9BUR4	548 aa	Known RBP	8.68	□□□□□ -1.02
USP4-213	ENST00000488520	MLPH	Q9BV36	600 aa	Predicted RBP	8.68	□□□□□ -1.02
USP4-213	ENST00000488520	GBA3	Q9H227	469 aa		8.68	□□□□□ -1.02
USP4-213	ENST00000488520	PCDH9	Q9HC56	1237 aa		8.68	□□□□□ -1.02
USP4-213	ENST00000488520	SMARCAL1	Q9NZC9	954 aa		8.68	□□□□□ -1.02
USP4-213	ENST00000488520	UBP1	Q9NZI7	540 aa		8.68	□□□□□ -1.02
USP4-213	ENST00000488520	DKK3	Q9UBP4	350 aa		8.68	□□□□□ -1.02
USP4-213	ENST00000488520	ASIC3	Q9UHC3	531 aa		8.68	□□□□□ -1.02

Retrieved 100 of 20,778 RNA–protein pairs in 52.5 ms