RNA–Protein interactions for RNA: ENST00000486741.5

HMGN1-216, Transcript of high mobility group nucleosome binding domain 1, humanhuman

TSL 2

Gene HMGN1, Length 4,299 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGN1-216ENST00000486741 SOD2P04179 222 aa13.09□□□□□ -0.31
HMGN1-216ENST00000486741 CLTBP09497 229 aa13.09□□□□□ -0.31
HMGN1-216ENST00000486741 MTHFD1P11586 935 aaKnown RBP13.09□□□□□ -0.31
HMGN1-216ENST00000486741 COL6A1P12109 1028 aa13.09□□□□□ -0.31
HMGN1-216ENST00000486741 DIO3P55073 304 aa13.09□□□□□ -0.31
HMGN1-216ENST00000486741 SULT2A1Q06520 285 aa13.09□□□□□ -0.31
HMGN1-216ENST00000486741 MAD2L1Q13257 205 aaPredicted RBP13.09□□□□□ -0.31
HMGN1-216ENST00000486741 DMC1Q14565 340 aa13.09□□□□□ -0.31
HMGN1-216ENST00000486741 DHRSXQ8N5I4 330 aa13.09□□□□□ -0.31
HMGN1-216ENST00000486741 ZNF599Q96NL3 588 aa13.09□□□□□ -0.31
HMGN1-216ENST00000486741 SH3GL1Q99961 368 aa13.09□□□□□ -0.31
HMGN1-216ENST00000486741 MIEF1Q9NQG6 463 aa13.09□□□□□ -0.31
HMGN1-216ENST00000486741 INTS10Q9NVR2 710 aaKnown RBP13.09□□□□□ -0.31
HMGN1-216ENST00000486741 C6orf203Q9P0P8 240 aaPredicted RBP13.09□□□□□ -0.31
HMGN1-216ENST00000486741 PCDHB1Q9Y5F3 818 aa13.09□□□□□ -0.31
HMGN1-216ENST00000486741 F5P12259 2224 aa13.08□□□□□ -0.31
HMGN1-216ENST00000486741 FGF18O76093 207 aa13.08□□□□□ -0.31
HMGN1-216ENST00000486741 ZNF37AP17032 561 aaPredicted RBP13.08□□□□□ -0.31
HMGN1-216ENST00000486741 KCNA5P22460 613 aa13.08□□□□□ -0.31
HMGN1-216ENST00000486741 AQP1P29972 269 aa13.08□□□□□ -0.31
HMGN1-216ENST00000486741 SLC6A4P31645 630 aa13.08□□□□□ -0.31
HMGN1-216ENST00000486741 GPC1P35052 558 aa13.08□□□□□ -0.31
HMGN1-216ENST00000486741 DGKQP52824 942 aa13.08□□□□□ -0.31
HMGN1-216ENST00000486741 MTPNP58546 118 aa13.08□□□□□ -0.31
HMGN1-216ENST00000486741 TRIM25Q14258 630 aaKnown RBP13.08□□□□□ -0.31
HMGN1-216ENST00000486741 SPESP1Q6UW49 350 aa13.08□□□□□ -0.31
HMGN1-216ENST00000486741 CHPFQ8IZ52 775 aa13.08□□□□□ -0.31
HMGN1-216ENST00000486741 RAB42Q8N4Z0 105 aa13.08□□□□□ -0.31
HMGN1-216ENST00000486741 TMEM175Q9BSA9 504 aa13.08□□□□□ -0.31
HMGN1-216ENST00000486741 TEX28O15482 410 aa13.08□□□□□ -0.32
HMGN1-216ENST00000486741 FFAR2O15552 330 aa13.08□□□□□ -0.32
HMGN1-216ENST00000486741 UQCRBP14927 111 aa13.08□□□□□ -0.32
HMGN1-216ENST00000486741 ARSAP15289 507 aa13.08□□□□□ -0.32
HMGN1-216ENST00000486741 GABRB3P28472 473 aa13.08□□□□□ -0.32
HMGN1-216ENST00000486741 RGRP47804 291 aa13.08□□□□□ -0.32
HMGN1-216ENST00000486741 LEPRP48357 1165 aaKnown RBP13.08□□□□□ -0.32
HMGN1-216ENST00000486741 VEGFBP49765 207 aa13.08□□□□□ -0.32
HMGN1-216ENST00000486741 LIPEQ05469 1076 aa13.08□□□□□ -0.32
HMGN1-216ENST00000486741 TECRLQ5HYJ1 363 aa13.08□□□□□ -0.32
HMGN1-216ENST00000486741 SORT1Q99523 831 aa13.08□□□□□ -0.32
HMGN1-216ENST00000486741 FEM1AQ9BSK4 669 aa13.08□□□□□ -0.32
HMGN1-216ENST00000486741 TFB2MQ9H5Q4 396 aaKnown RBP13.08□□□□□ -0.32
HMGN1-216ENST00000486741 SNX6Q9UNH7 406 aa13.08□□□□□ -0.32
HMGN1-216ENST00000486741 TBC1D30Q9Y2I9 924 aa13.08□□□□□ -0.32
HMGN1-216ENST00000486741 PPP6CO00743 305 aa13.08□□□□□ -0.32
HMGN1-216ENST00000486741 TNFAIP8O95379 198 aa13.08□□□□□ -0.32
HMGN1-216ENST00000486741 LYNP07948 512 aa13.08□□□□□ -0.32
HMGN1-216ENST00000486741 IRF5Q13568 498 aa13.08□□□□□ -0.32
HMGN1-216ENST00000486741 TNIP2Q8NFZ5 429 aa13.08□□□□□ -0.32
HMGN1-216ENST00000486741 PXYLP1Q8TE99 480 aa13.08□□□□□ -0.32
HMGN1-216ENST00000486741 AP2M1Q96CW1 435 aa13.08□□□□□ -0.32
HMGN1-216ENST00000486741 ZDHHC4Q9NPG8 344 aa13.08□□□□□ -0.32
HMGN1-216ENST00000486741 SLCO3A1Q9UIG8 710 aa13.08□□□□□ -0.32
HMGN1-216ENST00000486741 LZTS1Q9Y250 596 aa13.08□□□□□ -0.32
HMGN1-216ENST00000486741 SQORQ9Y6N5 450 aa13.08□□□□□ -0.32
HMGN1-216ENST00000486741 TTC3P53804 2025 aa13.08□□□□□ -0.32
HMGN1-216ENST00000486741 SDHDO14521 159 aa13.08□□□□□ -0.32
HMGN1-216ENST00000486741 B4GALT3O60512 393 aa13.08□□□□□ -0.32
HMGN1-216ENST00000486741 RFPL2O75678 378 aa13.08□□□□□ -0.32
HMGN1-216ENST00000486741 UROSP10746 265 aa13.08□□□□□ -0.32
HMGN1-216ENST00000486741 GNPDA1P46926 289 aa13.08□□□□□ -0.32
HMGN1-216ENST00000486741 CCNHP51946 323 aaPredicted RBP13.08□□□□□ -0.32
HMGN1-216ENST00000486741 RING1Q06587 406 aa13.08□□□□□ -0.32
HMGN1-216ENST00000486741 PPP1R8Q12972 351 aaKnown RBP13.08□□□□□ -0.32
HMGN1-216ENST00000486741 APCDD1Q8J025 514 aa13.08□□□□□ -0.32
HMGN1-216ENST00000486741 EBPLQ9BY08 206 aa13.08□□□□□ -0.32
HMGN1-216ENST00000486741 MKS1Q9NXB0 559 aa13.08□□□□□ -0.32
HMGN1-216ENST00000486741 PADI4Q9UM07 663 aa13.08□□□□□ -0.32
HMGN1-216ENST00000486741 C15orf38-AP3S2A0A0A6YYH1 394 aa13.07□□□□□ -0.32
HMGN1-216ENST00000486741 CCDC189A1A4V9 331 aa13.07□□□□□ -0.32
HMGN1-216ENST00000486741 RNASEH1O60930 286 aaKnown RBP13.07□□□□□ -0.32
HMGN1-216ENST00000486741 RFX3P48380 749 aa13.07□□□□□ -0.32
HMGN1-216ENST00000486741 IL5RAQ01344 420 aa13.07□□□□□ -0.32
HMGN1-216ENST00000486741 PWP1Q13610 501 aa13.07□□□□□ -0.32
HMGN1-216ENST00000486741 DSC3Q14574 896 aa13.07□□□□□ -0.32
HMGN1-216ENST00000486741 PLCL1Q15111 1095 aa13.07□□□□□ -0.32
HMGN1-216ENST00000486741 CCDC92Q53HC0 331 aaPredicted RBP13.07□□□□□ -0.32
HMGN1-216ENST00000486741 SDE2Q6IQ49 451 aa13.07□□□□□ -0.32
HMGN1-216ENST00000486741 CNKSR3Q6P9H4 555 aa13.07□□□□□ -0.32
HMGN1-216ENST00000486741 ARPINQ7Z6K5 226 aa13.07□□□□□ -0.32
HMGN1-216ENST00000486741 ZDHHC13Q8IUH4 622 aa13.07□□□□□ -0.32
HMGN1-216ENST00000486741 SORCS1Q8WY21 1168 aa13.07□□□□□ -0.32
HMGN1-216ENST00000486741 RNF38Q9H0F5 515 aa13.07□□□□□ -0.32
HMGN1-216ENST00000486741 SUV39H2Q9H5I1 410 aa13.07□□□□□ -0.32
HMGN1-216ENST00000486741 ZBTB26Q9HCK0 441 aa13.07□□□□□ -0.32
HMGN1-216ENST00000486741 KCTD5Q9NXV2 234 aa13.07□□□□□ -0.32
HMGN1-216ENST00000486741 IFRD1O00458 451 aaPredicted RBP13.07□□□□□ -0.32
HMGN1-216ENST00000486741 SEC24AO95486 1093 aa13.07□□□□□ -0.32
HMGN1-216ENST00000486741 POP4O95707 220 aaKnown RBP13.07□□□□□ -0.32
HMGN1-216ENST00000486741 JUNP05412 331 aaKnown RBP13.07□□□□□ -0.32
HMGN1-216ENST00000486741 ALOX15P16050 662 aaPredicted RBP13.07□□□□□ -0.32
HMGN1-216ENST00000486741 GM2AP17900 193 aa13.07□□□□□ -0.32
HMGN1-216ENST00000486741 NEK2P51955 445 aa13.07□□□□□ -0.32
HMGN1-216ENST00000486741 RFTN1Q14699 578 aaPredicted RBP13.07□□□□□ -0.32
HMGN1-216ENST00000486741 ZNF678Q5SXM1 525 aa13.07□□□□□ -0.32
HMGN1-216ENST00000486741 C16orf87Q6PH81 154 aa13.07□□□□□ -0.32
HMGN1-216ENST00000486741 GET4Q7L5D6 327 aaPredicted RBP13.07□□□□□ -0.32
HMGN1-216ENST00000486741 RAVER1Q8IY67 606 aaKnown RBP13.07□□□□□ -0.32
HMGN1-216ENST00000486741 FAM47BQ8NA70 645 aa13.07□□□□□ -0.32
HMGN1-216ENST00000486741 MYLIPQ8WY64 445 aa13.07□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 23.1 ms