RNA–Protein interactions for RNA: ENST00000485943.1

USP40-216, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 4

Gene USP40, Length 568 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-216ENST00000485943 RANBP10Q6VN20 620 aa7.94□□□□□ -1.14
USP40-216ENST00000485943 SYT10Q6XYQ8 523 aa7.94□□□□□ -1.14
USP40-216ENST00000485943 RFLNAQ6ZTI6 216 aa7.94□□□□□ -1.14
USP40-216ENST00000485943 MAATS1Q7Z4T9 603 aa7.94□□□□□ -1.14
USP40-216ENST00000485943 SNX20Q7Z614 316 aa7.94□□□□□ -1.14
USP40-216ENST00000485943 GLRX5Q86SX6 157 aa7.94□□□□□ -1.14
USP40-216ENST00000485943 AMZ2Q86W34 360 aa7.94□□□□□ -1.14
USP40-216ENST00000485943 CBARPQ8N350 705 aaPredicted RBP7.94□□□□□ -1.14
USP40-216ENST00000485943 CHCHD4Q8N4Q1 142 aa7.94□□□□□ -1.14
USP40-216ENST00000485943 BBOF1Q8ND07 529 aa7.94□□□□□ -1.14
USP40-216ENST00000485943 OR13C4Q8NGS5 318 aa7.94□□□□□ -1.14
USP40-216ENST00000485943 OR10G6Q8NH81 332 aa7.94□□□□□ -1.14
USP40-216ENST00000485943 RNF217Q8TC41 542 aa7.94□□□□□ -1.14
USP40-216ENST00000485943 SKA2Q8WVK7 121 aaPredicted RBP7.94□□□□□ -1.14
USP40-216ENST00000485943 RTP4Q96DX8 246 aa7.94□□□□□ -1.14
USP40-216ENST00000485943 DNAJC1Q96KC8 554 aaKnown RBP7.94□□□□□ -1.14
USP40-216ENST00000485943 NSMCE3Q96MG7 304 aa7.94□□□□□ -1.14
USP40-216ENST00000485943 VPS35Q96QK1 796 aa7.94□□□□□ -1.14
USP40-216ENST00000485943 GFM1Q96RP9 751 aaKnown RBP7.94□□□□□ -1.14
USP40-216ENST00000485943 AGAP2Q99490 1192 aa7.94□□□□□ -1.14
USP40-216ENST00000485943 LDHAL6BQ9BYZ2 381 aaPredicted RBP7.94□□□□□ -1.14
USP40-216ENST00000485943 FRMD8Q9BZ67 464 aaPredicted RBP7.94□□□□□ -1.14
USP40-216ENST00000485943 IL22Q9GZX6 179 aa7.94□□□□□ -1.14
USP40-216ENST00000485943 TCEAL2Q9H3H9 227 aaPredicted RBP7.94□□□□□ -1.14
USP40-216ENST00000485943 XAB2Q9HCS7 855 aaKnown RBP7.94□□□□□ -1.14
USP40-216ENST00000485943 PPANQ9NQ55 473 aaKnown RBP7.94□□□□□ -1.14
USP40-216ENST00000485943 EIF2B3Q9NR50 452 aaKnown RBP7.94□□□□□ -1.14
USP40-216ENST00000485943 SMARCAL1Q9NZC9 954 aa7.94□□□□□ -1.14
USP40-216ENST00000485943 TAAR2Q9P1P5 351 aa7.94□□□□□ -1.14
USP40-216ENST00000485943 LRIT1Q9P2V4 623 aa7.94□□□□□ -1.14
USP40-216ENST00000485943 CLCA2Q9UQC9 943 aa7.94□□□□□ -1.14
USP40-216ENST00000485943 PRKAB1Q9Y478 270 aa7.94□□□□□ -1.14
USP40-216ENST00000485943 SPO11Q9Y5K1 396 aa7.94□□□□□ -1.14
USP40-216ENST00000485943 CFAP54Q96N23 3096 aa7.94□□□□□ -1.14
USP40-216ENST00000485943 CNOT1A5YKK6 2376 aaKnown RBP7.93□□□□□ -1.14
USP40-216ENST00000485943 TRBV23OR9-2A0A075B6M9 112 aa7.93□□□□□ -1.14
USP40-216ENST00000485943 UBA6A0AVT1 1052 aaPredicted RBP7.93□□□□□ -1.14
USP40-216ENST00000485943 KLHL33A6NCF5 533 aa7.93□□□□□ -1.14
USP40-216ENST00000485943 FADS2P1A8MWK0 482 aa7.93□□□□□ -1.14
USP40-216ENST00000485943 TMX2-CTNND1H3BSU7 103 aa7.93□□□□□ -1.14
USP40-216ENST00000485943 GOLGA8MH3BSY2 632 aa7.93□□□□□ -1.14
USP40-216ENST00000485943 TRIM38O00635 465 aa7.93□□□□□ -1.14
USP40-216ENST00000485943 ZNF185O15231 689 aa7.93□□□□□ -1.14
USP40-216ENST00000485943 NUAK1O60285 661 aa7.93□□□□□ -1.14
USP40-216ENST00000485943 UGT1A9O60656 530 aa7.93□□□□□ -1.14
USP40-216ENST00000485943 KCNJ13O60928 360 aa7.93□□□□□ -1.14
USP40-216ENST00000485943 DNAJC6O75061 913 aa7.93□□□□□ -1.14
USP40-216ENST00000485943 NDUFS3O75489 264 aa7.93□□□□□ -1.14
USP40-216ENST00000485943 FTH1P02794 183 aa7.93□□□□□ -1.14
USP40-216ENST00000485943 TUBB4AP04350 444 aa7.93□□□□□ -1.14
USP40-216ENST00000485943 CEACAM5P06731 702 aa7.93□□□□□ -1.14
USP40-216ENST00000485943 GP1BAP07359 652 aa7.93□□□□□ -1.14
USP40-216ENST00000485943 OR56A5P0C7T3 313 aa7.93□□□□□ -1.14
USP40-216ENST00000485943 GLB1P16278 677 aa7.93□□□□□ -1.14
USP40-216ENST00000485943 ZNF7P17097 686 aaPredicted RBP7.93□□□□□ -1.14
USP40-216ENST00000485943 ZNF8P17098 575 aaPredicted RBP7.93□□□□□ -1.14
USP40-216ENST00000485943 UGT1A6P19224 532 aa7.93□□□□□ -1.14
USP40-216ENST00000485943 UGT1A1P22309 533 aa7.93□□□□□ -1.14
USP40-216ENST00000485943 UGT1A4P22310 534 aa7.93□□□□□ -1.14
USP40-216ENST00000485943 ACP1P24666 158 aa7.93□□□□□ -1.14
USP40-216ENST00000485943 UGT1A3P35503 534 aa7.93□□□□□ -1.14
USP40-216ENST00000485943 UGT1A5P35504 534 aa7.93□□□□□ -1.14
USP40-216ENST00000485943 HHEXQ03014 270 aa7.93□□□□□ -1.14
USP40-216ENST00000485943 NFATC2Q13469 925 aa7.93□□□□□ -1.14
USP40-216ENST00000485943 OLIG2Q13516 323 aa7.93□□□□□ -1.14
USP40-216ENST00000485943 TMED2Q15363 201 aa7.93□□□□□ -1.14
USP40-216ENST00000485943 TPRG1LQ5T0D9 272 aa7.93□□□□□ -1.14
USP40-216ENST00000485943 ZNF648Q5T619 568 aaPredicted RBP7.93□□□□□ -1.14
USP40-216ENST00000485943 PHF19Q5T6S3 580 aa7.93□□□□□ -1.14
USP40-216ENST00000485943 HES3Q5TGS1 186 aa7.93□□□□□ -1.14
USP40-216ENST00000485943 PTRHD1Q6GMV3 140 aaKnown RBP7.93□□□□□ -1.14
USP40-216ENST00000485943 MRNIPQ6NTE8 343 aa7.93□□□□□ -1.14
USP40-216ENST00000485943 MRPL14Q6P1L8 145 aaKnown RBP7.93□□□□□ -1.14
USP40-216ENST00000485943 KLHL35Q6PF15 583 aa7.93□□□□□ -1.14
USP40-216ENST00000485943 TMEM220Q6QAJ8 160 aa7.93□□□□□ -1.14
USP40-216ENST00000485943 RBM44Q6ZP01 1051 aaKnown RBP7.93□□□□□ -1.14
USP40-216ENST00000485943 SYDE1Q6ZW31 735 aaPredicted RBP7.93□□□□□ -1.14
USP40-216ENST00000485943 TMPRSS12Q86WS5 348 aa7.93□□□□□ -1.14
USP40-216ENST00000485943 PPIL6Q8IXY8 311 aa7.93□□□□□ -1.14
USP40-216ENST00000485943 SLC25A45Q8N413 288 aa7.93□□□□□ -1.14
USP40-216ENST00000485943 RASGEF1CQ8N431 466 aa7.93□□□□□ -1.14
USP40-216ENST00000485943 FAM181AQ8N9Y4 354 aa7.93□□□□□ -1.14
USP40-216ENST00000485943 KYQ8NBH2 561 aa7.93□□□□□ -1.14
USP40-216ENST00000485943 MNS1Q8NEH6 495 aa7.93□□□□□ -1.14
USP40-216ENST00000485943 COG1Q8WTW3 980 aa7.93□□□□□ -1.14
USP40-216ENST00000485943 ADAMTS14Q8WXS8 1223 aa7.93□□□□□ -1.14
USP40-216ENST00000485943 TADA1Q96BN2 335 aa7.93□□□□□ -1.14
USP40-216ENST00000485943 CCDC3Q9BQI4 270 aa7.93□□□□□ -1.14
USP40-216ENST00000485943 SCNM1Q9BWG6 230 aa7.93□□□□□ -1.14
USP40-216ENST00000485943 RBCK1Q9BYM8 510 aa7.93□□□□□ -1.14
USP40-216ENST00000485943 TRIM31Q9BZY9 425 aa7.93□□□□□ -1.14
USP40-216ENST00000485943 CLPBQ9H078 707 aa7.93□□□□□ -1.14
USP40-216ENST00000485943 DDX47Q9H0S4 455 aaKnown RBP7.93□□□□□ -1.14
USP40-216ENST00000485943 FAM96AQ9H5X1 160 aa7.93□□□□□ -1.14
USP40-216ENST00000485943 UGT1A7Q9HAW7 530 aa7.93□□□□□ -1.14
USP40-216ENST00000485943 UGT1A10Q9HAW8 530 aa7.93□□□□□ -1.14
USP40-216ENST00000485943 UGT1A8Q9HAW9 530 aa7.93□□□□□ -1.14
USP40-216ENST00000485943 IL26Q9NPH9 171 aa7.93□□□□□ -1.14
USP40-216ENST00000485943 NLE1Q9NVX2 485 aaPredicted RBP7.93□□□□□ -1.14
USP40-216ENST00000485943 KCNK4Q9NYG8 393 aa7.93□□□□□ -1.14
Retrieved 100 of 20,778 RNA–protein pairs in 33 ms