RNA–Protein interactions for RNA: ENST00000483216.1

USP40-213, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 4

Gene USP40, Length 641 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-213ENST00000483216 ZNF704Q6ZNC4 412 aaPredicted RBP5.75□□□□□ -1.49
USP40-213ENST00000483216 HIST3H2AQ7L7L0 130 aa5.75□□□□□ -1.49
USP40-213ENST00000483216 DSG4Q86SJ6 1040 aa5.75□□□□□ -1.49
USP40-213ENST00000483216 SMIM29Q86T20 159 aa5.75□□□□□ -1.49
USP40-213ENST00000483216 TMPRSS12Q86WS5 348 aa5.75□□□□□ -1.49
USP40-213ENST00000483216 OR8K5Q8NH50 307 aa5.75□□□□□ -1.49
USP40-213ENST00000483216 HM13Q8TCT9 377 aa5.75□□□□□ -1.49
USP40-213ENST00000483216 TRPC4APQ8TEL6 797 aa5.75□□□□□ -1.49
USP40-213ENST00000483216 ZKSCAN4Q969J2 545 aaPredicted RBP5.75□□□□□ -1.49
USP40-213ENST00000483216 CMTM3Q96MX0 182 aa5.75□□□□□ -1.49
USP40-213ENST00000483216 NEURL2Q9BR09 285 aa5.75□□□□□ -1.49
USP40-213ENST00000483216 TMEM39BQ9GZU3 492 aa5.75□□□□□ -1.49
USP40-213ENST00000483216 KAT14Q9H8E8 782 aa5.75□□□□□ -1.49
USP40-213ENST00000483216 EPB41L5Q9HCM4 733 aa5.75□□□□□ -1.49
USP40-213ENST00000483216 LRPPRCP42704 1394 aaKnown RBP5.75□□□□□ -1.49
USP40-213ENST00000483216 MBD5Q9P267 1494 aa5.75□□□□□ -1.49
USP40-213ENST00000483216 GLI2P10070 1586 aa5.75□□□□□ -1.49
USP40-213ENST00000483216 TTC37Q6PGP7 1564 aa5.75□□□□□ -1.49
USP40-213ENST00000483216 MAST1Q9Y2H9 1570 aa5.75□□□□□ -1.49
USP40-213ENST00000483216 MYO5CQ9NQX4 1742 aa5.74□□□□□ -1.49
USP40-213ENST00000483216 EIF4E1BA6NMX2 242 aaKnown RBP5.74□□□□□ -1.49
USP40-213ENST00000483216 MAP2K7O14733 419 aa5.74□□□□□ -1.49
USP40-213ENST00000483216 ZNHIT1O43257 154 aa5.74□□□□□ -1.49
USP40-213ENST00000483216 WDR1O75083 606 aa5.74□□□□□ -1.49
USP40-213ENST00000483216 FAM106CPP0CH98 169 aa5.74□□□□□ -1.49
USP40-213ENST00000483216 TSPY4P0CV99 314 aa5.74□□□□□ -1.49
USP40-213ENST00000483216 TSPY10P0CW01 314 aa5.74□□□□□ -1.49
USP40-213ENST00000483216 POLR2CP19387 275 aaPredicted RBP5.74□□□□□ -1.49
USP40-213ENST00000483216 KCNA5P22460 613 aa5.74□□□□□ -1.49
USP40-213ENST00000483216 TM4SF1P30408 202 aa5.74□□□□□ -1.49
USP40-213ENST00000483216 MAPK4P31152 587 aa5.74□□□□□ -1.49
USP40-213ENST00000483216 HMGN5P82970 282 aaKnown RBP5.74□□□□□ -1.49
USP40-213ENST00000483216 CCDC96Q2M329 555 aa5.74□□□□□ -1.49
USP40-213ENST00000483216 ZSCAN23Q3MJ62 389 aa5.74□□□□□ -1.49
USP40-213ENST00000483216 ACSM2BQ68CK6 577 aa5.74□□□□□ -1.49
USP40-213ENST00000483216 GDPD4Q6W3E5 623 aa5.74□□□□□ -1.49
USP40-213ENST00000483216 TICAM1Q8IUC6 712 aa5.74□□□□□ -1.49
USP40-213ENST00000483216 MAP7D3Q8IWC1 876 aa5.74□□□□□ -1.49
USP40-213ENST00000483216 SCFD2Q8WU76 684 aa5.74□□□□□ -1.49
USP40-213ENST00000483216 OR2A14Q96R47 310 aa5.74□□□□□ -1.49
USP40-213ENST00000483216 LRRC1Q9BTT6 524 aa5.74□□□□□ -1.49
USP40-213ENST00000483216 CHMP4BQ9H444 224 aaKnown RBP5.74□□□□□ -1.49
USP40-213ENST00000483216 TCF7L2Q9NQB0 619 aa5.74□□□□□ -1.49
USP40-213ENST00000483216 ABCF3Q9NUQ8 709 aa5.74□□□□□ -1.49
USP40-213ENST00000483216 CHMP5Q9NZZ3 219 aa5.74□□□□□ -1.49
USP40-213ENST00000483216 TMEM184BQ9Y519 407 aaPredicted RBP5.74□□□□□ -1.49
USP40-213ENST00000483216 ARHGAP5Q13017 1502 aa5.74□□□□□ -1.49
USP40-213ENST00000483216 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP5.74□□□□□ -1.49
USP40-213ENST00000483216 CD109Q6YHK3 1445 aa5.74□□□□□ -1.49
USP40-213ENST00000483216 DIP2BQ9P265 1576 aa5.73□□□□□ -1.49
USP40-213ENST00000483216 WDR7Q9Y4E6 1490 aa5.73□□□□□ -1.49
USP40-213ENST00000483216 DHX29Q7Z478 1369 aaKnown RBP5.73□□□□□ -1.49
USP40-213ENST00000483216 ZCWPW2A0A1B0GU75 182 aa5.73□□□□□ -1.49
USP40-213ENST00000483216 A0A1W2PP11 408 aa5.73□□□□□ -1.49
USP40-213ENST00000483216 C16orf97H3BN30 126 aa5.73□□□□□ -1.49
USP40-213ENST00000483216 XPNPEP2O43895 674 aa5.73□□□□□ -1.49
USP40-213ENST00000483216 OR2C1O95371 312 aa5.73□□□□□ -1.49
USP40-213ENST00000483216 CETPP11597 493 aa5.73□□□□□ -1.49
USP40-213ENST00000483216 ACTN1P12814 892 aa5.73□□□□□ -1.49
USP40-213ENST00000483216 HOXA13P31271 388 aaPredicted RBP5.73□□□□□ -1.49
USP40-213ENST00000483216 ARF3P61204 181 aaPredicted RBP5.73□□□□□ -1.49
USP40-213ENST00000483216 ARF1P84077 181 aaKnown RBP5.73□□□□□ -1.49
USP40-213ENST00000483216 ATG9AQ7Z3C6 839 aa5.73□□□□□ -1.49
USP40-213ENST00000483216 SLC9B2Q86UD5 537 aa5.73□□□□□ -1.49
USP40-213ENST00000483216 WDTC1Q8N5D0 677 aa5.73□□□□□ -1.49
USP40-213ENST00000483216 METTL27Q8N6F8 245 aaPredicted RBP5.73□□□□□ -1.49
USP40-213ENST00000483216 LMNTD1Q8N9Z9 388 aa5.73□□□□□ -1.49
USP40-213ENST00000483216 KBTBD3Q8NAB2 608 aa5.73□□□□□ -1.49
USP40-213ENST00000483216 SLC38A9Q8NBW4 561 aa5.73□□□□□ -1.49
USP40-213ENST00000483216 HJURPQ8NCD3 748 aaPredicted RBP5.73□□□□□ -1.49
USP40-213ENST00000483216 OR13A1Q8NGR1 328 aa5.73□□□□□ -1.49
USP40-213ENST00000483216 SLC38A5Q8WUX1 472 aa5.73□□□□□ -1.49
USP40-213ENST00000483216 PGAM5Q96HS1 289 aa5.73□□□□□ -1.49
USP40-213ENST00000483216 EIF2B3Q9NR50 452 aaKnown RBP5.73□□□□□ -1.49
USP40-213ENST00000483216 SETD4Q9NVD3 440 aa5.73□□□□□ -1.49
USP40-213ENST00000483216 SESN1Q9Y6P5 492 aa5.73□□□□□ -1.49
USP40-213ENST00000483216 POLR1AO95602 1720 aaPredicted RBP5.73□□□□□ -1.49
USP40-213ENST00000483216 ZCCHC11Q5TAX3 1644 aaKnown RBP5.73□□□□□ -1.49
USP40-213ENST00000483216 SYCP2Q9BX26 1530 aa5.73□□□□□ -1.49
USP40-213ENST00000483216 KIF7Q2M1P5 1343 aa5.73□□□□□ -1.49
USP40-213ENST00000483216 PLXNC1O60486 1568 aa5.72□□□□□ -1.49
USP40-213ENST00000483216 KIF13AQ9H1H9 1805 aa5.72□□□□□ -1.49
USP40-213ENST00000483216 NUP155O75694 1391 aa5.72□□□□□ -1.49
USP40-213ENST00000483216 IBTKQ9P2D0 1353 aaPredicted RBP5.72□□□□□ -1.49
USP40-213ENST00000483216 CTAGE9A4FU28 777 aa5.72□□□□□ -1.49
USP40-213ENST00000483216 DYNC1I1O14576 645 aa5.72□□□□□ -1.49
USP40-213ENST00000483216 SMAD9O15198 467 aaKnown RBP5.72□□□□□ -1.49
USP40-213ENST00000483216 PTP4A3O75365 173 aa5.72□□□□□ -1.49
USP40-213ENST00000483216 CTAGE8P0CG41 777 aa5.72□□□□□ -1.49
USP40-213ENST00000483216 MT3P25713 68 aa5.72□□□□□ -1.49
USP40-213ENST00000483216 MMP14P50281 582 aa5.72□□□□□ -1.49
USP40-213ENST00000483216 RUNX1T1Q06455 604 aa5.72□□□□□ -1.49
USP40-213ENST00000483216 ASTE1Q2TB18 679 aaPredicted RBP5.72□□□□□ -1.49
USP40-213ENST00000483216 CFAP77Q6ZQR2 320 aa5.72□□□□□ -1.49
USP40-213ENST00000483216 Q6ZTC4 211 aa5.72□□□□□ -1.49
USP40-213ENST00000483216 NFE4Q86UQ8 179 aa5.72□□□□□ -1.49
USP40-213ENST00000483216 CTAGE4Q8IX94 777 aa5.72□□□□□ -1.49
USP40-213ENST00000483216 UTP15Q8TED0 518 aaKnown RBP5.72□□□□□ -1.49
USP40-213ENST00000483216 SLC44A1Q8WWI5 657 aa5.72□□□□□ -1.49
USP40-213ENST00000483216 ELMOD3Q96FG2 381 aa5.72□□□□□ -1.49
Retrieved 100 of 20,778 RNA–protein pairs in 37.3 ms