RNA–Protein interactions for RNA: ENST00000479544.6

USP42-206, Transcript of ubiquitin specific peptidase 42, humanhuman

TSL 1 (best)

Gene USP42, Length 4,286 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP42-206ENST00000479544 PLOD3O60568 738 aa13.39□□□□□ -0.27
USP42-206ENST00000479544 PSIP1O75475 530 aaKnown RBP13.39□□□□□ -0.27
USP42-206ENST00000479544 MLYCDO95822 493 aa13.39□□□□□ -0.27
USP42-206ENST00000479544 PGK1P00558 417 aa13.39□□□□□ -0.27
USP42-206ENST00000479544 ENO2P09104 434 aaPredicted RBP13.39□□□□□ -0.27
USP42-206ENST00000479544 COX7A2P14406 83 aa13.39□□□□□ -0.27
USP42-206ENST00000479544 TCEA1P23193 301 aaKnown RBP13.39□□□□□ -0.27
USP42-206ENST00000479544 RECQLP46063 649 aaPredicted RBP13.39□□□□□ -0.27
USP42-206ENST00000479544 RPS3AP61247 264 aaKnown RBP13.39□□□□□ -0.27
USP42-206ENST00000479544 PYDC2Q56P42 97 aa13.39□□□□□ -0.27
USP42-206ENST00000479544 TAC4Q86UU9 113 aa13.39□□□□□ -0.27
USP42-206ENST00000479544 LEMD2Q8NC56 503 aa13.39□□□□□ -0.27
USP42-206ENST00000479544 ST13P5Q8NFI4 369 aaPredicted RBP13.39□□□□□ -0.27
USP42-206ENST00000479544 GPR156Q8NFN8 814 aa13.39□□□□□ -0.27
USP42-206ENST00000479544 SCAMP5Q8TAC9 235 aa13.39□□□□□ -0.27
USP42-206ENST00000479544 MYLPFQ96A32 169 aa13.39□□□□□ -0.27
USP42-206ENST00000479544 APOLD1Q96LR9 279 aa13.39□□□□□ -0.27
USP42-206ENST00000479544 INTS7Q9NVH2 962 aaKnown RBP13.39□□□□□ -0.27
USP42-206ENST00000479544 QSER1Q2KHR3 1735 aa13.39□□□□□ -0.27
USP42-206ENST00000479544 MYH9P35579 1960 aaKnown RBP13.39□□□□□ -0.27
USP42-206ENST00000479544 CCL15-CCL14A0A0B4J2E2 113 aa13.39□□□□□ -0.27
USP42-206ENST00000479544 PPP6CO00743 305 aa13.39□□□□□ -0.27
USP42-206ENST00000479544 KPNA5O15131 536 aa13.39□□□□□ -0.27
USP42-206ENST00000479544 RGS20O76081 388 aa13.39□□□□□ -0.27
USP42-206ENST00000479544 SERPINA1P01009 418 aa13.39□□□□□ -0.27
USP42-206ENST00000479544 PBLDP30039 288 aaPredicted RBP13.39□□□□□ -0.27
USP42-206ENST00000479544 RAB14P61106 215 aa13.39□□□□□ -0.27
USP42-206ENST00000479544 RPL26P61254 145 aaKnown RBP13.39□□□□□ -0.27
USP42-206ENST00000479544 CREB5Q02930 508 aa13.39□□□□□ -0.27
USP42-206ENST00000479544 IL18R1Q13478 541 aa13.39□□□□□ -0.27
USP42-206ENST00000479544 CRY1Q16526 586 aa13.39□□□□□ -0.27
USP42-206ENST00000479544 CCL15Q16663 113 aa13.39□□□□□ -0.27
USP42-206ENST00000479544 FAM187BQ17R55 369 aa13.39□□□□□ -0.27
USP42-206ENST00000479544 SLC39A12Q504Y0 691 aa13.39□□□□□ -0.27
USP42-206ENST00000479544 NEK5Q6P3R8 708 aa13.39□□□□□ -0.27
USP42-206ENST00000479544 TRIM48Q8IWZ4 208 aa13.39□□□□□ -0.27
USP42-206ENST00000479544 KDM1BQ8NB78 822 aa13.39□□□□□ -0.27
USP42-206ENST00000479544 UXS1Q8NBZ7 420 aa13.39□□□□□ -0.27
USP42-206ENST00000479544 SLC39A8Q9C0K1 460 aa13.39□□□□□ -0.27
USP42-206ENST00000479544 KAT8Q9H7Z6 458 aaKnown RBP13.39□□□□□ -0.27
USP42-206ENST00000479544 VPS9D1Q9Y2B5 631 aa13.39□□□□□ -0.27
USP42-206ENST00000479544 RNF11Q9Y3C5 154 aa13.39□□□□□ -0.27
USP42-206ENST00000479544 PCDHGA7Q9Y5G6 932 aa13.39□□□□□ -0.27
USP42-206ENST00000479544 KRBA1A5PL33 1030 aa13.38□□□□□ -0.27
USP42-206ENST00000479544 NME4O00746 187 aa13.38□□□□□ -0.27
USP42-206ENST00000479544 IL4RP24394 825 aa13.38□□□□□ -0.27
USP42-206ENST00000479544 CLCN2P51788 898 aa13.38□□□□□ -0.27
USP42-206ENST00000479544 BEX3Q00994 111 aa13.38□□□□□ -0.27
USP42-206ENST00000479544 ZNF773Q6PK81 442 aa13.38□□□□□ -0.27
USP42-206ENST00000479544 RIOX2Q8IUF8 465 aa13.38□□□□□ -0.27
USP42-206ENST00000479544 CENPIQ92674 756 aaPredicted RBP13.38□□□□□ -0.27
USP42-206ENST00000479544 YME1L1Q96TA2 773 aa13.38□□□□□ -0.27
USP42-206ENST00000479544 MYOCQ99972 504 aa13.38□□□□□ -0.27
USP42-206ENST00000479544 FUNDC2Q9BWH2 189 aa13.38□□□□□ -0.27
USP42-206ENST00000479544 FZD8Q9H461 694 aa13.38□□□□□ -0.27
USP42-206ENST00000479544 RPF2Q9H7B2 306 aaKnown RBP13.38□□□□□ -0.27
USP42-206ENST00000479544 VPS28Q9UK41 221 aa13.38□□□□□ -0.27
USP42-206ENST00000479544 HMX2A2RU54 273 aa13.38□□□□□ -0.27
USP42-206ENST00000479544 ARIH2O95376 493 aa13.38□□□□□ -0.27
USP42-206ENST00000479544 TSPAN19P0C672 248 aa13.38□□□□□ -0.27
USP42-206ENST00000479544 CD1EP15812 388 aa13.38□□□□□ -0.27
USP42-206ENST00000479544 HUNKP57058 714 aa13.38□□□□□ -0.27
USP42-206ENST00000479544 INTS11Q5TA45 600 aaKnown RBP13.38□□□□□ -0.27
USP42-206ENST00000479544 TLK2Q86UE8 772 aa13.38□□□□□ -0.27
USP42-206ENST00000479544 IGFN1Q86VF2 1251 aa13.38□□□□□ -0.27
USP42-206ENST00000479544 BBS7Q8IWZ6 715 aa13.38□□□□□ -0.27
USP42-206ENST00000479544 PHACTR4Q8IZ21 702 aa13.38□□□□□ -0.27
USP42-206ENST00000479544 ABHD11Q8NFV4 315 aa13.38□□□□□ -0.27
USP42-206ENST00000479544 KBTBD8Q8NFY9 601 aa13.38□□□□□ -0.27
USP42-206ENST00000479544 SUN5Q8TC36 379 aa13.38□□□□□ -0.27
USP42-206ENST00000479544 OLFM1Q99784 485 aa13.38□□□□□ -0.27
USP42-206ENST00000479544 DYRK4Q9NR20 520 aa13.38□□□□□ -0.27
USP42-206ENST00000479544 SLC9A8Q9Y2E8 581 aa13.38□□□□□ -0.27
USP42-206ENST00000479544 PCDHB3Q9Y5E6 796 aa13.38□□□□□ -0.27
USP42-206ENST00000479544 ARL5AQ9Y689 179 aa13.38□□□□□ -0.27
USP42-206ENST00000479544 TAF1P21675 1872 aa13.38□□□□□ -0.27
USP42-206ENST00000479544 KPNA6O60684 536 aa13.38□□□□□ -0.27
USP42-206ENST00000479544 INMTO95050 263 aa13.38□□□□□ -0.27
USP42-206ENST00000479544 EPN2O95208 641 aa13.38□□□□□ -0.27
USP42-206ENST00000479544 GOT2P00505 430 aaKnown RBP13.38□□□□□ -0.27
USP42-206ENST00000479544 GLDCP23378 1020 aa13.38□□□□□ -0.27
USP42-206ENST00000479544 CTSKP43235 329 aa13.38□□□□□ -0.27
USP42-206ENST00000479544 GLUD2P49448 558 aa13.38□□□□□ -0.27
USP42-206ENST00000479544 NCS1P62166 190 aa13.38□□□□□ -0.27
USP42-206ENST00000479544 C1DQ13901 141 aaKnown RBP13.38□□□□□ -0.27
USP42-206ENST00000479544 NCF4Q15080 339 aa13.38□□□□□ -0.27
USP42-206ENST00000479544 RNF111Q6ZNA4 994 aa13.38□□□□□ -0.27
USP42-206ENST00000479544 ZDHHC21Q8IVQ6 265 aa13.38□□□□□ -0.27
USP42-206ENST00000479544 GPR65Q8IYL9 337 aa13.38□□□□□ -0.27
USP42-206ENST00000479544 SLC34A3Q8N130 599 aa13.38□□□□□ -0.27
USP42-206ENST00000479544 TTC29Q8NA56 475 aaPredicted RBP13.38□□□□□ -0.27
USP42-206ENST00000479544 MLPHQ9BV36 600 aaPredicted RBP13.38□□□□□ -0.27
USP42-206ENST00000479544 RNF39Q9H2S5 420 aa13.38□□□□□ -0.27
USP42-206ENST00000479544 IPPKQ9H8X2 491 aa13.38□□□□□ -0.27
USP42-206ENST00000479544 EIF2B3Q9NR50 452 aaKnown RBP13.38□□□□□ -0.27
USP42-206ENST00000479544 NUP214P35658 2090 aaPredicted RBP13.37□□□□□ -0.27
USP42-206ENST00000479544 RAP2AP10114 183 aa13.37□□□□□ -0.27
USP42-206ENST00000479544 IMPDH1P20839 514 aa13.37□□□□□ -0.27
USP42-206ENST00000479544 CDH5P33151 784 aaPredicted RBP13.37□□□□□ -0.27
USP42-206ENST00000479544 ALDH9A1P49189 494 aa13.37□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 24.3 ms