RNA–Protein interactions for RNA: ENST00000474059.1

CCDC88A-212, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 5

Gene CCDC88A, Length 541 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-212ENST00000474059 PRKRIP1Q9H875 184 aaPredicted RBP2.97□□□□□ -1.93
CCDC88A-212ENST00000474059 EIF2B3Q9NR50 452 aaKnown RBP2.97□□□□□ -1.93
CCDC88A-212ENST00000474059 LIMA1Q9UHB6 759 aaKnown RBP2.97□□□□□ -1.93
CCDC88A-212ENST00000474059 ASIC3Q9UHC3 531 aa2.97□□□□□ -1.93
CCDC88A-212ENST00000474059 ACAD8Q9UKU7 415 aa2.97□□□□□ -1.93
CCDC88A-212ENST00000474059 LOXL2Q9Y4K0 774 aa2.97□□□□□ -1.93
CCDC88A-212ENST00000474059 RSF1Q96T23 1441 aaPredicted RBP2.96□□□□□ -1.94
CCDC88A-212ENST00000474059 A0A0G2JLW4 131 aa2.96□□□□□ -1.94
CCDC88A-212ENST00000474059 FAM237BA0A1B0GVD1 139 aa2.96□□□□□ -1.94
CCDC88A-212ENST00000474059 A0A1W2PQF6 199 aa2.96□□□□□ -1.94
CCDC88A-212ENST00000474059 A6NCN8 305 aa2.96□□□□□ -1.94
CCDC88A-212ENST00000474059 USP17L23D6RBM5 183 aa2.96□□□□□ -1.94
CCDC88A-212ENST00000474059 MLYCDO95822 493 aa2.96□□□□□ -1.94
CCDC88A-212ENST00000474059 FTCDO95954 541 aa2.96□□□□□ -1.94
CCDC88A-212ENST00000474059 EIF2S1P05198 315 aaKnown RBP2.96□□□□□ -1.94
CCDC88A-212ENST00000474059 DNAH10OSP0CZ25 163 aa2.96□□□□□ -1.94
CCDC88A-212ENST00000474059 RARGP13631 454 aa2.96□□□□□ -1.94
CCDC88A-212ENST00000474059 BDKRB2P30411 391 aa2.96□□□□□ -1.94
CCDC88A-212ENST00000474059 SHMT1P34896 483 aa2.96□□□□□ -1.94
CCDC88A-212ENST00000474059 GABRB2P47870 512 aa2.96□□□□□ -1.94
CCDC88A-212ENST00000474059 CLNS1AP54105 237 aaKnown RBP2.96□□□□□ -1.94
CCDC88A-212ENST00000474059 KRTAP10-1P60331 282 aa2.96□□□□□ -1.94
CCDC88A-212ENST00000474059 OLR1P78380 273 aa2.96□□□□□ -1.94
CCDC88A-212ENST00000474059 CEBPZQ03701 1054 aaKnown RBP2.96□□□□□ -1.94
CCDC88A-212ENST00000474059 PRKG2Q13237 762 aa2.96□□□□□ -1.94
CCDC88A-212ENST00000474059 ITGA9Q13797 1035 aa2.96□□□□□ -1.94
CCDC88A-212ENST00000474059 FRG1Q14331 258 aaKnown RBP2.96□□□□□ -1.94
CCDC88A-212ENST00000474059 MEA1Q16626 185 aa2.96□□□□□ -1.94
CCDC88A-212ENST00000474059 SNAI3Q3KNW1 292 aa2.96□□□□□ -1.94
CCDC88A-212ENST00000474059 SPATA1Q5VX52 437 aa2.96□□□□□ -1.94
CCDC88A-212ENST00000474059 OR7E24Q6IFN5 339 aa2.96□□□□□ -1.94
CCDC88A-212ENST00000474059 CYP20A1Q6UW02 462 aa2.96□□□□□ -1.94
CCDC88A-212ENST00000474059 IKBIPQ70UQ0 350 aa2.96□□□□□ -1.94
CCDC88A-212ENST00000474059 PCDH20Q8N6Y1 951 aaKnown RBP2.96□□□□□ -1.94
CCDC88A-212ENST00000474059 TMEM116Q8NCL8 245 aa2.96□□□□□ -1.94
CCDC88A-212ENST00000474059 HMGCLL1Q8TB92 370 aa2.96□□□□□ -1.94
CCDC88A-212ENST00000474059 ARHGEF2Q92974 986 aaKnown RBP2.96□□□□□ -1.94
CCDC88A-212ENST00000474059 GTF3C6Q969F1 213 aa2.96□□□□□ -1.94
CCDC88A-212ENST00000474059 ARHGEF26Q96DR7 871 aa2.96□□□□□ -1.94
CCDC88A-212ENST00000474059 PABPC5Q96DU9 382 aaKnown RBP2.96□□□□□ -1.94
CCDC88A-212ENST00000474059 LINGO1Q96FE5 620 aa2.96□□□□□ -1.94
CCDC88A-212ENST00000474059 TIGD1Q96MW7 591 aa2.96□□□□□ -1.94
CCDC88A-212ENST00000474059 WDFY2Q96P53 400 aa2.96□□□□□ -1.94
CCDC88A-212ENST00000474059 MAP7D2Q96T17 732 aa2.96□□□□□ -1.94
CCDC88A-212ENST00000474059 NEURL2Q9BR09 285 aa2.96□□□□□ -1.94
CCDC88A-212ENST00000474059 STRA6Q9BX79 667 aa2.96□□□□□ -1.94
CCDC88A-212ENST00000474059 NDST4Q9H3R1 872 aa2.96□□□□□ -1.94
CCDC88A-212ENST00000474059 PPP1R3EQ9H7J1 279 aa2.96□□□□□ -1.94
CCDC88A-212ENST00000474059 MAGEE1Q9HCI5 957 aa2.96□□□□□ -1.94
CCDC88A-212ENST00000474059 ZDHHC18Q9NUE0 388 aa2.96□□□□□ -1.94
CCDC88A-212ENST00000474059 HAO1Q9UJM8 370 aa2.96□□□□□ -1.94
CCDC88A-212ENST00000474059 ACSL5Q9ULC5 683 aa2.96□□□□□ -1.94
CCDC88A-212ENST00000474059 CORO1CQ9ULV4 474 aaPredicted RBP2.96□□□□□ -1.94
CCDC88A-212ENST00000474059 GPR34Q9UPC5 381 aa2.96□□□□□ -1.94
CCDC88A-212ENST00000474059 ERVK-11Q9UQG0 969 aa2.96□□□□□ -1.94
CCDC88A-212ENST00000474059 KLF2Q9Y5W3 355 aaPredicted RBP2.96□□□□□ -1.94
CCDC88A-212ENST00000474059 LIPT2A6NK58 231 aa2.95□□□□□ -1.94
CCDC88A-212ENST00000474059 EIF3CLB5ME19 914 aaKnown RBP2.95□□□□□ -1.94
CCDC88A-212ENST00000474059 K7ENM7 598 aa2.95□□□□□ -1.94
CCDC88A-212ENST00000474059 PSMD14O00487 310 aa2.95□□□□□ -1.94
CCDC88A-212ENST00000474059 AP3D1O14617 1153 aa2.95□□□□□ -1.94
CCDC88A-212ENST00000474059 ZNHIT1O43257 154 aa2.95□□□□□ -1.94
CCDC88A-212ENST00000474059 SEC14L5O43304 696 aa2.95□□□□□ -1.94
CCDC88A-212ENST00000474059 PAGE4O60829 102 aa2.95□□□□□ -1.94
CCDC88A-212ENST00000474059 MT-CYBP00156 380 aaPredicted RBP2.95□□□□□ -1.94
CCDC88A-212ENST00000474059 CDAP32320 146 aa2.95□□□□□ -1.94
CCDC88A-212ENST00000474059 HOXD13P35453 343 aa2.95□□□□□ -1.94
CCDC88A-212ENST00000474059 PIP4K2AP48426 406 aaPredicted RBP2.95□□□□□ -1.94
CCDC88A-212ENST00000474059 METAP2P50579 478 aaKnown RBP eCLIP2.95□□□□□ -1.94
CCDC88A-212ENST00000474059 FOXM1Q08050 763 aa2.95□□□□□ -1.94
CCDC88A-212ENST00000474059 PDE1CQ14123 709 aaPredicted RBP2.95□□□□□ -1.94
CCDC88A-212ENST00000474059 FGFBP1Q14512 234 aa2.95□□□□□ -1.94
CCDC88A-212ENST00000474059 ALG11Q2TAA5 492 aa2.95□□□□□ -1.94
CCDC88A-212ENST00000474059 DPCR1Q3MIW9 517 aa2.95□□□□□ -1.94
CCDC88A-212ENST00000474059 TMEM35AQ53FP2 167 aa2.95□□□□□ -1.94
CCDC88A-212ENST00000474059 XKR6Q5GH73 641 aa2.95□□□□□ -1.94
CCDC88A-212ENST00000474059 GGNBP1Q5YKI7 109 aa2.95□□□□□ -1.94
CCDC88A-212ENST00000474059 NCEH1Q6PIU2 408 aa2.95□□□□□ -1.94
CCDC88A-212ENST00000474059 BRAT1Q6PJG6 821 aa2.95□□□□□ -1.94
CCDC88A-212ENST00000474059 TSSK4Q6SA08 328 aa2.95□□□□□ -1.94
CCDC88A-212ENST00000474059 SPATA6LQ8N4H0 392 aa2.95□□□□□ -1.94
CCDC88A-212ENST00000474059 TTC39CQ8N584 583 aa2.95□□□□□ -1.94
CCDC88A-212ENST00000474059 FRMD1Q8N878 549 aa2.95□□□□□ -1.94
CCDC88A-212ENST00000474059 ACVR1CQ8NER5 493 aa2.95□□□□□ -1.94
CCDC88A-212ENST00000474059 SMARCE1Q969G3 411 aa2.95□□□□□ -1.94
CCDC88A-212ENST00000474059 FAM149B1Q96BN6 582 aa2.95□□□□□ -1.94
CCDC88A-212ENST00000474059 MMABQ96EY8 250 aaPredicted RBP2.95□□□□□ -1.94
CCDC88A-212ENST00000474059 FTOQ9C0B1 505 aaKnown RBP eCLIP2.95□□□□□ -1.94
CCDC88A-212ENST00000474059 TKTL2Q9H0I9 626 aa2.95□□□□□ -1.94
CCDC88A-212ENST00000474059 POLR1BQ9H9Y6 1135 aa2.95□□□□□ -1.94
CCDC88A-212ENST00000474059 ASAH2Q9NR71 780 aa2.95□□□□□ -1.94
CCDC88A-212ENST00000474059 SLC6A13Q9NSD5 602 aa2.95□□□□□ -1.94
CCDC88A-212ENST00000474059 HAUS2Q9NVX0 235 aa2.95□□□□□ -1.94
CCDC88A-212ENST00000474059 FAM120CQ9NX05 1096 aaKnown RBP2.95□□□□□ -1.94
CCDC88A-212ENST00000474059 BARHL2Q9NY43 387 aa2.95□□□□□ -1.94
CCDC88A-212ENST00000474059 EHD2Q9NZN4 543 aa2.95□□□□□ -1.94
CCDC88A-212ENST00000474059 TBC1D29Q9UFV1 150 aa2.95□□□□□ -1.94
CCDC88A-212ENST00000474059 LSM4Q9Y4Z0 139 aaKnown RBP2.95□□□□□ -1.94
CCDC88A-212ENST00000474059 LYVE1Q9Y5Y7 322 aa2.95□□□□□ -1.94
CCDC88A-212ENST00000474059 PCNX3Q9H6A9 2034 aa2.95□□□□□ -1.94
Retrieved 100 of 20,778 RNA–protein pairs in 26.8 ms