RNA–Protein interactions for RNA: ENST00000473405.1

CCDC88B-206, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 1 (best)

Gene CCDC88B, Length 783 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-206ENST00000473405 VIPP01282 170 aa18.47■□□□□ 0.55
CCDC88B-206ENST00000473405 APOC2P02655 101 aa18.47■□□□□ 0.55
CCDC88B-206ENST00000473405 TYRP1P17643 537 aa18.47■□□□□ 0.55
CCDC88B-206ENST00000473405 ITGB6P18564 788 aa18.47■□□□□ 0.55
CCDC88B-206ENST00000473405 HLA-DPA1P20036 260 aa18.47■□□□□ 0.55
CCDC88B-206ENST00000473405 SPAM1P38567 509 aa18.47■□□□□ 0.55
CCDC88B-206ENST00000473405 NFATC3Q12968 1075 aa18.47■□□□□ 0.55
CCDC88B-206ENST00000473405 MPP3Q13368 585 aa18.47■□□□□ 0.55
CCDC88B-206ENST00000473405 GPR18Q14330 331 aa18.47■□□□□ 0.55
CCDC88B-206ENST00000473405 CLCA4Q14CN2 919 aa18.47■□□□□ 0.55
CCDC88B-206ENST00000473405 CHRNA6Q15825 494 aa18.47■□□□□ 0.55
CCDC88B-206ENST00000473405 FAM151BQ6UXP7 276 aa18.47■□□□□ 0.55
CCDC88B-206ENST00000473405 CEACAM20Q6UY09 585 aa18.47■□□□□ 0.55
CCDC88B-206ENST00000473405 WASH2PQ6VEQ5 465 aa18.47■□□□□ 0.55
CCDC88B-206ENST00000473405 PID1Q7Z2X4 250 aa18.47■□□□□ 0.55
CCDC88B-206ENST00000473405 TIPARPQ7Z3E1 657 aaKnown RBP18.47■□□□□ 0.55
CCDC88B-206ENST00000473405 GLT6D1Q7Z4J2 308 aa18.47■□□□□ 0.55
CCDC88B-206ENST00000473405 DAAM2Q86T65 1068 aa18.47■□□□□ 0.55
CCDC88B-206ENST00000473405 TRIM48Q8IWZ4 208 aa18.47■□□□□ 0.55
CCDC88B-206ENST00000473405 DDHD1Q8NEL9 900 aa18.47■□□□□ 0.55
CCDC88B-206ENST00000473405 GDAP1Q8TB36 358 aa18.47■□□□□ 0.55
CCDC88B-206ENST00000473405 BLOC1S5Q8TDH9 187 aa18.47■□□□□ 0.55
CCDC88B-206ENST00000473405 C9orf72Q96LT7 481 aa18.47■□□□□ 0.55
CCDC88B-206ENST00000473405 ARHGAP9Q9BRR9 750 aa18.47■□□□□ 0.55
CCDC88B-206ENST00000473405 ZPBPQ9BS86 351 aa18.47■□□□□ 0.55
CCDC88B-206ENST00000473405 GBA3Q9H227 469 aa18.47■□□□□ 0.55
CCDC88B-206ENST00000473405 WASH6PQ9NQA3 447 aa18.47■□□□□ 0.55
CCDC88B-206ENST00000473405 POT1Q9NUX5 634 aa18.47■□□□□ 0.55
CCDC88B-206ENST00000473405 HACD3Q9P035 362 aa18.47■□□□□ 0.55
CCDC88B-206ENST00000473405 RSPH14Q9UHP6 348 aa18.47■□□□□ 0.55
CCDC88B-206ENST00000473405 TRHDEQ9UKU6 1024 aa18.47■□□□□ 0.55
CCDC88B-206ENST00000473405 WDR37Q9Y2I8 494 aa18.47■□□□□ 0.55
CCDC88B-206ENST00000473405 SBDSQ9Y3A5 250 aaKnown RBP eCLIP18.47■□□□□ 0.55
CCDC88B-206ENST00000473405 PTPN13Q12923 2485 aa18.47■□□□□ 0.55
CCDC88B-206ENST00000473405 BUD23O43709 281 aaKnown RBP18.46■□□□□ 0.55
CCDC88B-206ENST00000473405 UGT1A9O60656 530 aa18.46■□□□□ 0.55
CCDC88B-206ENST00000473405 UGT1A6P19224 532 aa18.46■□□□□ 0.55
CCDC88B-206ENST00000473405 IDSP22304 550 aa18.46■□□□□ 0.55
CCDC88B-206ENST00000473405 UGT1A1P22309 533 aa18.46■□□□□ 0.55
CCDC88B-206ENST00000473405 UGT1A4P22310 534 aa18.46■□□□□ 0.55
CCDC88B-206ENST00000473405 RBL1P28749 1068 aa18.46■□□□□ 0.55
CCDC88B-206ENST00000473405 CTNNA1P35221 906 aaKnown RBP18.46■□□□□ 0.55
CCDC88B-206ENST00000473405 CAPZBP47756 277 aa18.46■□□□□ 0.55
CCDC88B-206ENST00000473405 LEPRP48357 1165 aaKnown RBP18.46■□□□□ 0.55
CCDC88B-206ENST00000473405 CTSCP53634 463 aa18.46■□□□□ 0.55
CCDC88B-206ENST00000473405 XRCC4Q13426 336 aa18.46■□□□□ 0.55
CCDC88B-206ENST00000473405 SPA17Q15506 151 aa18.46■□□□□ 0.55
CCDC88B-206ENST00000473405 ZDHHC20Q5W0Z9 365 aa18.46■□□□□ 0.55
CCDC88B-206ENST00000473405 NLGN4XQ8N0W4 816 aa18.46■□□□□ 0.55
CCDC88B-206ENST00000473405 RASGEF1AQ8N9B8 481 aa18.46■□□□□ 0.55
CCDC88B-206ENST00000473405 NLGN4YQ8NFZ3 816 aaPredicted RBP18.46■□□□□ 0.55
CCDC88B-206ENST00000473405 RSC1A1Q92681 617 aa18.46■□□□□ 0.55
CCDC88B-206ENST00000473405 UGT1A7Q9HAW7 530 aa18.46■□□□□ 0.55
CCDC88B-206ENST00000473405 UGT1A10Q9HAW8 530 aa18.46■□□□□ 0.55
CCDC88B-206ENST00000473405 UGT1A8Q9HAW9 530 aa18.46■□□□□ 0.55
CCDC88B-206ENST00000473405 TMEM184BQ9Y519 407 aaPredicted RBP18.46■□□□□ 0.55
CCDC88B-206ENST00000473405 GLYATL1P3A0A0U1RQE8 302 aa18.45■□□□□ 0.54
CCDC88B-206ENST00000473405 SOWAHDA6NJG2 315 aa18.45■□□□□ 0.54
CCDC88B-206ENST00000473405 CAPN5O15484 640 aaPredicted RBP18.45■□□□□ 0.54
CCDC88B-206ENST00000473405 STK17BO94768 372 aa18.45■□□□□ 0.54
CCDC88B-206ENST00000473405 DLGAP3O95886 979 aa18.45■□□□□ 0.54
CCDC88B-206ENST00000473405 FECHP22830 423 aa18.45■□□□□ 0.54
CCDC88B-206ENST00000473405 TNNT3P45378 269 aaPredicted RBP18.45■□□□□ 0.54
CCDC88B-206ENST00000473405 DMPKQ09013 629 aa18.45■□□□□ 0.54
CCDC88B-206ENST00000473405 GTF2H3Q13889 308 aa18.45■□□□□ 0.54
CCDC88B-206ENST00000473405 PTPRCAPQ14761 206 aa18.45■□□□□ 0.54
CCDC88B-206ENST00000473405 BRSK1Q8TDC3 778 aa18.45■□□□□ 0.54
CCDC88B-206ENST00000473405 TGM7Q96PF1 710 aa18.45■□□□□ 0.54
CCDC88B-206ENST00000473405 FSD1LQ9BXM9 530 aa18.45■□□□□ 0.54
CCDC88B-206ENST00000473405 SMOXQ9NWM0 555 aa18.45■□□□□ 0.54
CCDC88B-206ENST00000473405 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP18.45■□□□□ 0.54
CCDC88B-206ENST00000473405 TRIM10Q9UDY6 481 aa18.45■□□□□ 0.54
CCDC88B-206ENST00000473405 LRRK2Q5S007 2527 aa18.44■□□□□ 0.54
CCDC88B-206ENST00000473405 LOC101059948A0A1B0GTJ6 334 aa18.44■□□□□ 0.54
CCDC88B-206ENST00000473405 PYCARD-AS1I3L0S3 204 aa18.44■□□□□ 0.54
CCDC88B-206ENST00000473405 POLR1CO15160 346 aaPredicted RBP18.44■□□□□ 0.54
CCDC88B-206ENST00000473405 TOX3O15405 576 aaPredicted RBP18.44■□□□□ 0.54
CCDC88B-206ENST00000473405 PJA2O43164 708 aa18.44■□□□□ 0.54
CCDC88B-206ENST00000473405 SLC28A2O43868 658 aa18.44■□□□□ 0.54
CCDC88B-206ENST00000473405 PPFIA2O75334 1257 aa18.44■□□□□ 0.54
CCDC88B-206ENST00000473405 AGTP01019 485 aa18.44■□□□□ 0.54
CCDC88B-206ENST00000473405 VCLP18206 1134 aa18.44■□□□□ 0.54
CCDC88B-206ENST00000473405 CYLC1P35663 651 aaPredicted RBP18.44■□□□□ 0.54
CCDC88B-206ENST00000473405 COPS2P61201 443 aa18.44■□□□□ 0.54
CCDC88B-206ENST00000473405 OLIG2Q13516 323 aa18.44■□□□□ 0.54
CCDC88B-206ENST00000473405 LDLRAP1Q5SW96 308 aa18.44■□□□□ 0.54
CCDC88B-206ENST00000473405 GPRC6AQ5T6X5 926 aa18.44■□□□□ 0.54
CCDC88B-206ENST00000473405 FAM83HQ6ZRV2 1179 aaPredicted RBP18.44■□□□□ 0.54
CCDC88B-206ENST00000473405 UNC5BQ8IZJ1 945 aa18.44■□□□□ 0.54
CCDC88B-206ENST00000473405 GPR150Q8NGU9 434 aa18.44■□□□□ 0.54
CCDC88B-206ENST00000473405 ACTL9Q8TC94 416 aa18.44■□□□□ 0.54
CCDC88B-206ENST00000473405 CXorf40BQ96DE9 158 aa18.44■□□□□ 0.54
CCDC88B-206ENST00000473405 SLC45A3Q96JT2 553 aa18.44■□□□□ 0.54
CCDC88B-206ENST00000473405 TTC25Q96NG3 672 aa18.44■□□□□ 0.54
CCDC88B-206ENST00000473405 FICDQ9BVA6 458 aa18.44■□□□□ 0.54
CCDC88B-206ENST00000473405 ZCCHC2Q9C0B9 1178 aaKnown RBP18.44■□□□□ 0.54
CCDC88B-206ENST00000473405 ZNF768Q9H5H4 540 aaKnown RBP18.44■□□□□ 0.54
CCDC88B-206ENST00000473405 REXO2Q9Y3B8 237 aaKnown RBP18.44■□□□□ 0.54
CCDC88B-206ENST00000473405 PKP3Q9Y446 797 aa18.44■□□□□ 0.54
CCDC88B-206ENST00000473405 PCDHA3Q9Y5H8 950 aa18.44■□□□□ 0.54
Retrieved 100 of 20,778 RNA–protein pairs in 34.4 ms