RNA–Protein interactions for RNA: ENST00000472056.5

COL6A3-209, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 1 (best) BASIC

Gene COL6A3, Length 8,628 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-209ENST00000472056 TMEM27Q9HBJ8 222 aa13.2□□□□□ -0.3
COL6A3-209ENST00000472056 CLCA1A8K7I4 914 aa13.2□□□□□ -0.3
COL6A3-209ENST00000472056 ZNF3P17036 446 aa13.2□□□□□ -0.3
COL6A3-209ENST00000472056 MAGEA12P43365 314 aa13.2□□□□□ -0.3
COL6A3-209ENST00000472056 EGFL6Q8IUX8 553 aa13.2□□□□□ -0.3
COL6A3-209ENST00000472056 OR2L5Q8NG80 312 aa13.2□□□□□ -0.3
COL6A3-209ENST00000472056 POF1BQ8WVV4 589 aa13.2□□□□□ -0.3
COL6A3-209ENST00000472056 GPER1Q99527 375 aa13.2□□□□□ -0.3
COL6A3-209ENST00000472056 DPAGT1Q9H3H5 408 aa13.2□□□□□ -0.3
COL6A3-209ENST00000472056 FBXO5Q9UKT4 447 aa13.2□□□□□ -0.3
COL6A3-209ENST00000472056 OR7A10O76100 309 aa13.19□□□□□ -0.3
COL6A3-209ENST00000472056 FSTL1Q12841 308 aa13.19□□□□□ -0.3
COL6A3-209ENST00000472056 CHRDL2Q6WN34 429 aa13.19□□□□□ -0.3
COL6A3-209ENST00000472056 LRRC52Q8N7C0 313 aa13.19□□□□□ -0.3
COL6A3-209ENST00000472056 FAM98AQ8NCA5 519 aaKnown RBP13.19□□□□□ -0.3
COL6A3-209ENST00000472056 CNTNAP4Q9C0A0 1308 aa13.19□□□□□ -0.3
COL6A3-209ENST00000472056 UBQLN2Q9UHD9 624 aa13.19□□□□□ -0.3
COL6A3-209ENST00000472056 CENPBD1B2RD01 187 aa13.19□□□□□ -0.3
COL6A3-209ENST00000472056 TOP3BO95985 862 aaKnown RBP13.19□□□□□ -0.3
COL6A3-209ENST00000472056 LCN1P31025 176 aa13.19□□□□□ -0.3
COL6A3-209ENST00000472056 MAPK12P53778 367 aa13.19□□□□□ -0.3
COL6A3-209ENST00000472056 SLC25A52Q3SY17 297 aa13.19□□□□□ -0.3
COL6A3-209ENST00000472056 SLCO2A1Q92959 643 aa13.19□□□□□ -0.3
COL6A3-209ENST00000472056 ZNF354BQ96LW1 612 aa13.19□□□□□ -0.3
COL6A3-209ENST00000472056 AIF1LQ9BQI0 150 aa13.19□□□□□ -0.3
COL6A3-209ENST00000472056 OR10H1Q9Y4A9 318 aa13.19□□□□□ -0.3
COL6A3-209ENST00000472056 MAU2Q9Y6X3 613 aa13.19□□□□□ -0.3
COL6A3-209ENST00000472056 NFASCO94856 1347 aa13.19□□□□□ -0.3
COL6A3-209ENST00000472056 CNTNAP2Q9UHC6 1331 aa13.19□□□□□ -0.3
COL6A3-209ENST00000472056 GIMAP1-GIMAP5A0A087WTJ2 511 aa13.19□□□□□ -0.3
COL6A3-209ENST00000472056 CCNB2O95067 398 aa13.19□□□□□ -0.3
COL6A3-209ENST00000472056 CD86P42081 329 aa13.19□□□□□ -0.3
COL6A3-209ENST00000472056 CEBPGP53567 150 aa13.19□□□□□ -0.3
COL6A3-209ENST00000472056 MAPK10P53779 464 aa13.19□□□□□ -0.3
COL6A3-209ENST00000472056 GNA12Q03113 381 aa13.19□□□□□ -0.3
COL6A3-209ENST00000472056 OR5K1Q8NHB7 308 aa13.19□□□□□ -0.3
COL6A3-209ENST00000472056 FGF19O95750 216 aa13.19□□□□□ -0.3
COL6A3-209ENST00000472056 CYP11A1P05108 521 aa13.19□□□□□ -0.3
COL6A3-209ENST00000472056 HMGN1P05114 100 aa13.19□□□□□ -0.3
COL6A3-209ENST00000472056 KLHL26Q53HC5 615 aa13.19□□□□□ -0.3
COL6A3-209ENST00000472056 KLHDC10Q6PID8 442 aa13.19□□□□□ -0.3
COL6A3-209ENST00000472056 ZFPM1Q8IX07 1006 aa13.19□□□□□ -0.3
COL6A3-209ENST00000472056 GALNT6Q8NCL4 622 aa13.19□□□□□ -0.3
COL6A3-209ENST00000472056 POFUT2Q9Y2G5 429 aa13.19□□□□□ -0.3
COL6A3-209ENST00000472056 RAB36O95755 333 aa13.19□□□□□ -0.3
COL6A3-209ENST00000472056 MT-CO1P00395 513 aa13.19□□□□□ -0.3
COL6A3-209ENST00000472056 HSD3B1P14060 373 aa13.19□□□□□ -0.3
COL6A3-209ENST00000472056 POU5F1Q01860 360 aaKnown RBP13.19□□□□□ -0.3
COL6A3-209ENST00000472056 ELMO1Q92556 727 aa13.19□□□□□ -0.3
COL6A3-209ENST00000472056 RNF31Q96EP0 1072 aa13.19□□□□□ -0.3
COL6A3-209ENST00000472056 SH2D3AQ9BRG2 576 aa13.19□□□□□ -0.3
COL6A3-209ENST00000472056 NAV1Q8NEY1 1877 aa13.19□□□□□ -0.3
COL6A3-209ENST00000472056 AMPD1P23109 780 aa13.19□□□□□ -0.3
COL6A3-209ENST00000472056 YAP1P46937 504 aaKnown RBP13.19□□□□□ -0.3
COL6A3-209ENST00000472056 GMPSP49915 693 aaPredicted RBP13.19□□□□□ -0.3
COL6A3-209ENST00000472056 HEPACAMQ14CZ8 416 aa13.19□□□□□ -0.3
COL6A3-209ENST00000472056 ECHDC2Q86YB7 292 aa13.19□□□□□ -0.3
COL6A3-209ENST00000472056 OR10H5Q8NGA6 315 aa13.19□□□□□ -0.3
COL6A3-209ENST00000472056 STYXQ8WUJ0 223 aa13.19□□□□□ -0.3
COL6A3-209ENST00000472056 POLR3BQ9NW08 1133 aaPredicted RBP13.19□□□□□ -0.3
COL6A3-209ENST00000472056 VNN2O95498 520 aa13.18□□□□□ -0.3
COL6A3-209ENST00000472056 ALDH2P05091 517 aa13.18□□□□□ -0.3
COL6A3-209ENST00000472056 FSHRP23945 695 aa13.18□□□□□ -0.3
COL6A3-209ENST00000472056 AGTR1P30556 359 aa13.18□□□□□ -0.3
COL6A3-209ENST00000472056 TCEAL6Q6IPX3 200 aa13.18□□□□□ -0.3
COL6A3-209ENST00000472056 CAPN13Q6MZZ7 669 aaPredicted RBP13.18□□□□□ -0.3
COL6A3-209ENST00000472056 SNX20Q7Z614 316 aa13.18□□□□□ -0.3
COL6A3-209ENST00000472056 TNS4Q8IZW8 715 aa13.18□□□□□ -0.3
COL6A3-209ENST00000472056 FCRL4Q96PJ5 515 aa13.18□□□□□ -0.3
COL6A3-209ENST00000472056 PTCH2Q9Y6C5 1203 aa13.18□□□□□ -0.3
COL6A3-209ENST00000472056 DGKBQ9Y6T7 804 aa13.18□□□□□ -0.3
COL6A3-209ENST00000472056 HTR2AP28223 471 aa13.18□□□□□ -0.3
COL6A3-209ENST00000472056 FKBP1CQ5VVH2 108 aa13.18□□□□□ -0.3
COL6A3-209ENST00000472056 FRRS1Q6ZNA5 592 aa13.18□□□□□ -0.3
COL6A3-209ENST00000472056 GOLM1Q8NBJ4 401 aa13.18□□□□□ -0.3
COL6A3-209ENST00000472056 NSMCE3Q96MG7 304 aa13.18□□□□□ -0.3
COL6A3-209ENST00000472056 TPK1Q9H3S4 243 aa13.18□□□□□ -0.3
COL6A3-209ENST00000472056 FARSBQ9NSD9 589 aaKnown RBP13.18□□□□□ -0.3
COL6A3-209ENST00000472056 SNCAIPQ9Y6H5 919 aa13.18□□□□□ -0.3
COL6A3-209ENST00000472056 MAP3K6O95382 1288 aa13.18□□□□□ -0.3
COL6A3-209ENST00000472056 PRAMEF12O95522 483 aa13.18□□□□□ -0.3
COL6A3-209ENST00000472056 CDH1P12830 882 aa13.18□□□□□ -0.3
COL6A3-209ENST00000472056 CFL1P23528 166 aaKnown RBP13.18□□□□□ -0.3
COL6A3-209ENST00000472056 AMHR2Q16671 573 aa13.18□□□□□ -0.3
COL6A3-209ENST00000472056 KCTD19Q17RG1 926 aaPredicted RBP13.18□□□□□ -0.3
COL6A3-209ENST00000472056 ANKS1BQ7Z6G8 1248 aa13.18□□□□□ -0.3
COL6A3-209ENST00000472056 TRAPPC5Q8IUR0 188 aa13.18□□□□□ -0.3
COL6A3-209ENST00000472056 ADGRG2Q8IZP9 1017 aa13.18□□□□□ -0.3
COL6A3-209ENST00000472056 KAT2AQ92830 837 aa13.18□□□□□ -0.3
COL6A3-209ENST00000472056 AHCYL2Q96HN2 611 aaKnown RBP13.18□□□□□ -0.3
COL6A3-209ENST00000472056 E5RJQ4 531 aa13.18□□□□□ -0.3
COL6A3-209ENST00000472056 ACOX3O15254 700 aa13.18□□□□□ -0.3
COL6A3-209ENST00000472056 DFNA5O60443 496 aa13.18□□□□□ -0.3
COL6A3-209ENST00000472056 IFNA21P01568 189 aa13.18□□□□□ -0.3
COL6A3-209ENST00000472056 GIMD1P0DJR0 217 aa13.18□□□□□ -0.3
COL6A3-209ENST00000472056 UBR7Q8N806 425 aa13.18□□□□□ -0.3
COL6A3-209ENST00000472056 TSEN15Q8WW01 171 aaKnown RBP13.18□□□□□ -0.3
COL6A3-209ENST00000472056 MYO19Q96H55 970 aa13.18□□□□□ -0.3
COL6A3-209ENST00000472056 POMPQ9Y244 141 aa13.18□□□□□ -0.3
COL6A3-209ENST00000472056 CYP4B1P13584 511 aa13.18□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 44.5 ms