RNA–Protein interactions for RNA: ENST00000466342.1

SQSTM1-206, Transcript of sequestosome 1, humanhuman

TSL 2

Gene SQSTM1, Length 808 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-206ENST00000466342 AP2A1O95782 977 aa11.79□□□□□ -0.52
SQSTM1-206ENST00000466342 TUBB4AP04350 444 aa11.79□□□□□ -0.52
SQSTM1-206ENST00000466342 PIRTP0C851 137 aa11.79□□□□□ -0.52
SQSTM1-206ENST00000466342 DCTP40126 519 aa11.79□□□□□ -0.52
SQSTM1-206ENST00000466342 UQCRFS1P47985 274 aa11.79□□□□□ -0.52
SQSTM1-206ENST00000466342 ATP1A2P50993 1020 aa11.79□□□□□ -0.52
SQSTM1-206ENST00000466342 OLIG2Q13516 323 aa11.79□□□□□ -0.52
SQSTM1-206ENST00000466342 SEMA5AQ13591 1074 aa11.79□□□□□ -0.52
SQSTM1-206ENST00000466342 CAPRIN2Q6IMN6 1127 aaKnown RBP11.79□□□□□ -0.52
SQSTM1-206ENST00000466342 PNCKQ6P2M8 343 aa11.79□□□□□ -0.52
SQSTM1-206ENST00000466342 Q6ZVL8 140 aa11.79□□□□□ -0.52
SQSTM1-206ENST00000466342 LYSMD3Q7Z3D4 306 aa11.79□□□□□ -0.52
SQSTM1-206ENST00000466342 RD3Q7Z3Z2 195 aa11.79□□□□□ -0.52
SQSTM1-206ENST00000466342 TECPR1Q7Z6L1 1165 aa11.79□□□□□ -0.52
SQSTM1-206ENST00000466342 GKN2Q86XP6 184 aa11.79□□□□□ -0.52
SQSTM1-206ENST00000466342 OR56A4Q8NGH8 313 aa11.79□□□□□ -0.52
SQSTM1-206ENST00000466342 CCHCR1Q8TD31 782 aa11.79□□□□□ -0.52
SQSTM1-206ENST00000466342 GPBAR1Q8TDU6 330 aa11.79□□□□□ -0.52
SQSTM1-206ENST00000466342 FUBP1Q96AE4 644 aaKnown RBP11.79□□□□□ -0.52
SQSTM1-206ENST00000466342 APOL2Q9BQE5 337 aa11.79□□□□□ -0.52
SQSTM1-206ENST00000466342 CDH19Q9H159 772 aa11.79□□□□□ -0.52
SQSTM1-206ENST00000466342 TRABDQ9H4I3 376 aa11.79□□□□□ -0.52
SQSTM1-206ENST00000466342 ZFYVE1Q9HBF4 777 aa11.79□□□□□ -0.52
SQSTM1-206ENST00000466342 ARNT2Q9HBZ2 717 aa11.79□□□□□ -0.52
SQSTM1-206ENST00000466342 RAB6BQ9NRW1 208 aa11.79□□□□□ -0.52
SQSTM1-206ENST00000466342 HACD3Q9P035 362 aa11.79□□□□□ -0.52
SQSTM1-206ENST00000466342 KLQ9UEF7 1012 aa11.79□□□□□ -0.52
SQSTM1-206ENST00000466342 FEZ2Q9UHY8 353 aaPredicted RBP11.79□□□□□ -0.52
SQSTM1-206ENST00000466342 VPS4AQ9UN37 437 aa11.79□□□□□ -0.52
SQSTM1-206ENST00000466342 NEU2Q9Y3R4 380 aa11.79□□□□□ -0.52
SQSTM1-206ENST00000466342 SPO11Q9Y5K1 396 aa11.79□□□□□ -0.52
SQSTM1-206ENST00000466342 POLQO75417 2590 aa11.79□□□□□ -0.52
SQSTM1-206ENST00000466342 RP1L1Q8IWN7 2480 aaPredicted RBP11.78□□□□□ -0.52
SQSTM1-206ENST00000466342 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP11.78□□□□□ -0.52
SQSTM1-206ENST00000466342 A1L4Q6 167 aa11.78□□□□□ -0.52
SQSTM1-206ENST00000466342 TMEM202A6NGA9 273 aa11.78□□□□□ -0.52
SQSTM1-206ENST00000466342 PRR19A6NJB7 356 aa11.78□□□□□ -0.52
SQSTM1-206ENST00000466342 E7EVH7 732 aa11.78□□□□□ -0.52
SQSTM1-206ENST00000466342 CCDC188H7C350 402 aa11.78□□□□□ -0.52
SQSTM1-206ENST00000466342 KIF2AO00139 706 aaPredicted RBP11.78□□□□□ -0.52
SQSTM1-206ENST00000466342 GAS8O95995 478 aa11.78□□□□□ -0.52
SQSTM1-206ENST00000466342 KRT14P02533 472 aa11.78□□□□□ -0.52
SQSTM1-206ENST00000466342 COL8A1P27658 744 aa11.78□□□□□ -0.52
SQSTM1-206ENST00000466342 ETV3P41162 512 aa11.78□□□□□ -0.52
SQSTM1-206ENST00000466342 SPINT3P49223 89 aa11.78□□□□□ -0.52
SQSTM1-206ENST00000466342 DPTQ07507 201 aa11.78□□□□□ -0.52
SQSTM1-206ENST00000466342 SPARCL1Q14515 664 aa11.78□□□□□ -0.52
SQSTM1-206ENST00000466342 TRIP13Q15645 432 aaPredicted RBP11.78□□□□□ -0.52
SQSTM1-206ENST00000466342 LACTB2Q53H82 288 aaPredicted RBP11.78□□□□□ -0.52
SQSTM1-206ENST00000466342 DENND5AQ6IQ26 1287 aa11.78□□□□□ -0.52
SQSTM1-206ENST00000466342 RFLNAQ6ZTI6 216 aa11.78□□□□□ -0.52
SQSTM1-206ENST00000466342 ZNF765Q7L2R6 523 aa11.78□□□□□ -0.52
SQSTM1-206ENST00000466342 TMC3Q7Z5M5 1100 aa11.78□□□□□ -0.52
SQSTM1-206ENST00000466342 LINC00523Q86TU6 105 aa11.78□□□□□ -0.52
SQSTM1-206ENST00000466342 NRSN1Q8IZ57 195 aa11.78□□□□□ -0.52
SQSTM1-206ENST00000466342 IL22RA1Q8N6P7 574 aa11.78□□□□□ -0.52
SQSTM1-206ENST00000466342 ARL10Q8N8L6 244 aa11.78□□□□□ -0.52
SQSTM1-206ENST00000466342 OR6C4Q8NGE1 309 aa11.78□□□□□ -0.52
SQSTM1-206ENST00000466342 SLCO2A1Q92959 643 aa11.78□□□□□ -0.52
SQSTM1-206ENST00000466342 EID2BQ96D98 161 aa11.78□□□□□ -0.52
SQSTM1-206ENST00000466342 GPR63Q9BZJ6 419 aa11.78□□□□□ -0.52
SQSTM1-206ENST00000466342 DDX47Q9H0S4 455 aaKnown RBP11.78□□□□□ -0.52
SQSTM1-206ENST00000466342 ZNF768Q9H5H4 540 aaKnown RBP11.78□□□□□ -0.52
SQSTM1-206ENST00000466342 EIF2B3Q9NR50 452 aaKnown RBP11.78□□□□□ -0.52
SQSTM1-206ENST00000466342 PKD2L2Q9NZM6 624 aa11.78□□□□□ -0.52
SQSTM1-206ENST00000466342 PCYOX1Q9UHG3 505 aa11.78□□□□□ -0.52
SQSTM1-206ENST00000466342 SHOC2Q9UQ13 582 aa11.78□□□□□ -0.52
SQSTM1-206ENST00000466342 ITPR3Q14573 2671 aa11.78□□□□□ -0.52
SQSTM1-206ENST00000466342 RGSL1A5PLK6 1076 aa11.77□□□□□ -0.53
SQSTM1-206ENST00000466342 ZNF891A8MT65 544 aaPredicted RBP11.77□□□□□ -0.53
SQSTM1-206ENST00000466342 AURKAO14965 403 aa11.77□□□□□ -0.53
SQSTM1-206ENST00000466342 SEMA7AO75326 666 aa11.77□□□□□ -0.53
SQSTM1-206ENST00000466342 SUN1O94901 812 aa11.77□□□□□ -0.53
SQSTM1-206ENST00000466342 ECEL1O95672 775 aa11.77□□□□□ -0.53
SQSTM1-206ENST00000466342 DDAH2O95865 285 aa11.77□□□□□ -0.53
SQSTM1-206ENST00000466342 SLC4A1P02730 911 aa11.77□□□□□ -0.53
SQSTM1-206ENST00000466342 APRTP07741 180 aa11.77□□□□□ -0.53
SQSTM1-206ENST00000466342 CELA2BP08218 269 aaPredicted RBP11.77□□□□□ -0.53
SQSTM1-206ENST00000466342 LIFP15018 202 aa11.77□□□□□ -0.53
SQSTM1-206ENST00000466342 GNLYP22749 145 aa11.77□□□□□ -0.53
SQSTM1-206ENST00000466342 TEAD1P28347 426 aa11.77□□□□□ -0.53
SQSTM1-206ENST00000466342 HMGCLP35914 325 aa11.77□□□□□ -0.53
SQSTM1-206ENST00000466342 LMAN1P49257 510 aa11.77□□□□□ -0.53
SQSTM1-206ENST00000466342 BASP1P80723 227 aaKnown RBP11.77□□□□□ -0.53
SQSTM1-206ENST00000466342 MSLNQ13421 630 aaPredicted RBP11.77□□□□□ -0.53
SQSTM1-206ENST00000466342 OGFOD3Q6PK18 319 aa11.77□□□□□ -0.53
SQSTM1-206ENST00000466342 MAMDC2Q7Z304 686 aaPredicted RBP11.77□□□□□ -0.53
SQSTM1-206ENST00000466342 GLT6D1Q7Z4J2 308 aa11.77□□□□□ -0.53
SQSTM1-206ENST00000466342 NLRP8Q86W28 1048 aa11.77□□□□□ -0.53
SQSTM1-206ENST00000466342 SRRM1Q8IYB3 904 aaKnown RBP11.77□□□□□ -0.53
SQSTM1-206ENST00000466342 TTC30BQ8N4P2 665 aa11.77□□□□□ -0.53
SQSTM1-206ENST00000466342 GALNT11Q8NCW6 608 aa11.77□□□□□ -0.53
SQSTM1-206ENST00000466342 BLOC1S5Q8TDH9 187 aa11.77□□□□□ -0.53
SQSTM1-206ENST00000466342 OR1E3Q8WZA6 343 aa11.77□□□□□ -0.53
SQSTM1-206ENST00000466342 RUNDC3BQ96NL0 473 aa11.77□□□□□ -0.53
SQSTM1-206ENST00000466342 LGR4Q9BXB1 951 aa11.77□□□□□ -0.53
SQSTM1-206ENST00000466342 TEX101Q9BY14 249 aa11.77□□□□□ -0.53
SQSTM1-206ENST00000466342 ABCG8Q9H221 673 aa11.77□□□□□ -0.53
SQSTM1-206ENST00000466342 WDR26Q9H7D7 661 aa11.77□□□□□ -0.53
SQSTM1-206ENST00000466342 PHPT1Q9NRX4 125 aaPredicted RBP11.77□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 23 ms