RNA–Protein interactions for RNA: ENST00000466159.6

SYNE1-217, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best) BASIC

Gene SYNE1, Length 2,610 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-217ENST00000466159 CHERPQ8IWX8 916 aaKnown RBP8.84□□□□□ -0.99
SYNE1-217ENST00000466159 APCDD1Q8J025 514 aa8.84□□□□□ -0.99
SYNE1-217ENST00000466159 PIH1D2Q8WWB5 315 aa8.84□□□□□ -0.99
SYNE1-217ENST00000466159 TMEM125Q96AQ2 219 aa8.84□□□□□ -0.99
SYNE1-217ENST00000466159 ALG14Q96F25 216 aa8.84□□□□□ -0.99
SYNE1-217ENST00000466159 ZNF696Q9H7X3 374 aa8.84□□□□□ -0.99
SYNE1-217ENST00000466159 CCM2LQ9NUG4 571 aaPredicted RBP8.84□□□□□ -0.99
SYNE1-217ENST00000466159 ARMC1Q9NVT9 282 aa8.84□□□□□ -0.99
SYNE1-217ENST00000466159 STOML2Q9UJZ1 356 aa8.84□□□□□ -0.99
SYNE1-217ENST00000466159 DHRS7Q9Y394 339 aa8.84□□□□□ -0.99
SYNE1-217ENST00000466159 SAC3D1A6NKF1 404 aa8.84□□□□□ -1
SYNE1-217ENST00000466159 A8MX80 341 aa8.84□□□□□ -1
SYNE1-217ENST00000466159 PRRG1O14668 218 aa8.84□□□□□ -1
SYNE1-217ENST00000466159 PRMT5O14744 637 aaPredicted RBP8.84□□□□□ -1
SYNE1-217ENST00000466159 GREM1O60565 184 aa8.84□□□□□ -1
SYNE1-217ENST00000466159 SLC22A3O75751 556 aa8.84□□□□□ -1
SYNE1-217ENST00000466159 MTHFD1P11586 935 aaKnown RBP8.84□□□□□ -1
SYNE1-217ENST00000466159 CALRP27797 417 aaKnown RBP8.84□□□□□ -1
SYNE1-217ENST00000466159 OXTRP30559 389 aa8.84□□□□□ -1
SYNE1-217ENST00000466159 RPL5P46777 297 aaKnown RBP8.84□□□□□ -1
SYNE1-217ENST00000466159 HTR6P50406 440 aa8.84□□□□□ -1
SYNE1-217ENST00000466159 ROR2Q01974 943 aaKnown RBP8.84□□□□□ -1
SYNE1-217ENST00000466159 CDH18Q13634 790 aa8.84□□□□□ -1
SYNE1-217ENST00000466159 TBCELQ5QJ74 424 aa8.84□□□□□ -1
SYNE1-217ENST00000466159 C6orf136Q5SQH8 315 aa8.84□□□□□ -1
SYNE1-217ENST00000466159 ARMC12Q5T9G4 340 aa8.84□□□□□ -1
SYNE1-217ENST00000466159 CWF19L1Q69YN2 538 aaKnown RBP8.84□□□□□ -1
SYNE1-217ENST00000466159 SBSNQ6UWP8 590 aa8.84□□□□□ -1
SYNE1-217ENST00000466159 ZNF783Q6ZMS7 281 aa8.84□□□□□ -1
SYNE1-217ENST00000466159 ZBTB49Q6ZSB9 765 aa8.84□□□□□ -1
SYNE1-217ENST00000466159 ERMP1Q7Z2K6 904 aa8.84□□□□□ -1
SYNE1-217ENST00000466159 MFN1Q8IWA4 741 aa8.84□□□□□ -1
SYNE1-217ENST00000466159 CLDN19Q8N6F1 224 aa8.84□□□□□ -1
SYNE1-217ENST00000466159 FNDC5Q8NAU1 212 aa8.84□□□□□ -1
SYNE1-217ENST00000466159 DIS3LQ8TF46 1054 aaKnown RBP8.84□□□□□ -1
SYNE1-217ENST00000466159 NUDT8Q8WV74 236 aa8.84□□□□□ -1
SYNE1-217ENST00000466159 TBRG4Q969Z0 631 aaKnown RBP eCLIP8.84□□□□□ -1
SYNE1-217ENST00000466159 TRMT2BQ96GJ1 504 aaKnown RBP8.84□□□□□ -1
SYNE1-217ENST00000466159 MYO19Q96H55 970 aa8.84□□□□□ -1
SYNE1-217ENST00000466159 TMEM74Q96NL1 305 aa8.84□□□□□ -1
SYNE1-217ENST00000466159 ZNF382Q96SR6 550 aa8.84□□□□□ -1
SYNE1-217ENST00000466159 BRINP2Q9C0B6 783 aa8.84□□□□□ -1
SYNE1-217ENST00000466159 CIPCQ9C0C6 399 aa8.84□□□□□ -1
SYNE1-217ENST00000466159 GRIP2Q9C0E4 1043 aa8.84□□□□□ -1
SYNE1-217ENST00000466159 HIPK3Q9H422 1215 aa8.84□□□□□ -1
SYNE1-217ENST00000466159 MAGEE1Q9HCI5 957 aa8.84□□□□□ -1
SYNE1-217ENST00000466159 ZNF334Q9HCZ1 680 aaPredicted RBP8.84□□□□□ -1
SYNE1-217ENST00000466159 PLK2Q9NYY3 685 aa8.84□□□□□ -1
SYNE1-217ENST00000466159 EVLQ9UI08 416 aaPredicted RBP8.84□□□□□ -1
SYNE1-217ENST00000466159 MICAL3Q7RTP6 2002 aa8.83□□□□□ -1
SYNE1-217ENST00000466159 PIKFYVEQ9Y2I7 2098 aa8.83□□□□□ -1
SYNE1-217ENST00000466159 DHRS12A0PJE2 317 aa8.83□□□□□ -1
SYNE1-217ENST00000466159 CCDC154A6NI56 674 aa8.83□□□□□ -1
SYNE1-217ENST00000466159 AQP12BA6NM10 295 aa8.83□□□□□ -1
SYNE1-217ENST00000466159 H0YJX3 145 aa8.83□□□□□ -1
SYNE1-217ENST00000466159 PLOD2O00469 737 aa8.83□□□□□ -1
SYNE1-217ENST00000466159 GAPDHSO14556 408 aaPredicted RBP8.83□□□□□ -1
SYNE1-217ENST00000466159 ARPC2O15144 300 aa8.83□□□□□ -1
SYNE1-217ENST00000466159 SYNCRIPO60506 623 aaKnown RBP8.83□□□□□ -1
SYNE1-217ENST00000466159 KATNA1O75449 491 aa8.83□□□□□ -1
SYNE1-217ENST00000466159 PGLSO95336 258 aa8.83□□□□□ -1
SYNE1-217ENST00000466159 PRAMEF1O95521 474 aa8.83□□□□□ -1
SYNE1-217ENST00000466159 GUCA1CO95843 209 aa8.83□□□□□ -1
SYNE1-217ENST00000466159 SOD2P04179 222 aa8.83□□□□□ -1
SYNE1-217ENST00000466159 CAPN1P07384 714 aa8.83□□□□□ -1
SYNE1-217ENST00000466159 SPATA31D3P0C874 917 aa8.83□□□□□ -1
SYNE1-217ENST00000466159 BMP2P12643 396 aa8.83□□□□□ -1
SYNE1-217ENST00000466159 NCK1P16333 377 aa8.83□□□□□ -1
SYNE1-217ENST00000466159 GSK3BP49841 420 aa8.83□□□□□ -1
SYNE1-217ENST00000466159 POLR2JP52435 117 aaKnown RBP8.83□□□□□ -1
SYNE1-217ENST00000466159 ERVK-8P63133 956 aa8.83□□□□□ -1
SYNE1-217ENST00000466159 VEPH1Q14D04 833 aa8.83□□□□□ -1
SYNE1-217ENST00000466159 NADK2Q4G0N4 442 aa8.83□□□□□ -1
SYNE1-217ENST00000466159 TIGD2Q4W5G0 525 aa8.83□□□□□ -1
SYNE1-217ENST00000466159 COQ5Q5HYK3 327 aa8.83□□□□□ -1
SYNE1-217ENST00000466159 PTRHD1Q6GMV3 140 aaKnown RBP8.83□□□□□ -1
SYNE1-217ENST00000466159 FAM117BQ6P1L5 589 aa8.83□□□□□ -1
SYNE1-217ENST00000466159 SPATA31D4Q6ZUB0 917 aa8.83□□□□□ -1
SYNE1-217ENST00000466159 FRA10AC1Q70Z53 315 aa8.83□□□□□ -1
SYNE1-217ENST00000466159 EFL1Q7Z2Z2 1120 aaKnown RBP8.83□□□□□ -1
SYNE1-217ENST00000466159 SERPINA9Q86WD7 417 aa8.83□□□□□ -1
SYNE1-217ENST00000466159 EGFL6Q8IUX8 553 aa8.83□□□□□ -1
SYNE1-217ENST00000466159 AQP12AQ8IXF9 295 aa8.83□□□□□ -1
SYNE1-217ENST00000466159 KIAA2013Q8IYS2 634 aa8.83□□□□□ -1
SYNE1-217ENST00000466159 STK40Q8N2I9 435 aa8.83□□□□□ -1
SYNE1-217ENST00000466159 SFRP1Q8N474 314 aa8.83□□□□□ -1
SYNE1-217ENST00000466159 ANKFN1Q8N957 763 aa8.83□□□□□ -1
SYNE1-217ENST00000466159 SLAIN1Q8ND83 568 aa8.83□□□□□ -1
SYNE1-217ENST00000466159 METTL6Q8TCB7 284 aa8.83□□□□□ -1
SYNE1-217ENST00000466159 PROKR1Q8TCW9 393 aa8.83□□□□□ -1
SYNE1-217ENST00000466159 LKAAEAR1Q8TD35 194 aa8.83□□□□□ -1
SYNE1-217ENST00000466159 ZFAND2BQ8WV99 257 aa8.83□□□□□ -1
SYNE1-217ENST00000466159 NCSTNQ92542 709 aa8.83□□□□□ -1
SYNE1-217ENST00000466159 NMD3Q96D46 503 aaKnown RBP8.83□□□□□ -1
SYNE1-217ENST00000466159 TMEM79Q9BSE2 394 aa8.83□□□□□ -1
SYNE1-217ENST00000466159 OSBPL11Q9BXB4 747 aa8.83□□□□□ -1
SYNE1-217ENST00000466159 INTS7Q9NVH2 962 aaKnown RBP8.83□□□□□ -1
SYNE1-217ENST00000466159 ACTR3BQ9P1U1 418 aa8.83□□□□□ -1
SYNE1-217ENST00000466159 CLEC4EQ9ULY5 219 aa8.83□□□□□ -1
SYNE1-217ENST00000466159 USP22Q9UPT9 525 aa8.83□□□□□ -1
Retrieved 100 of 20,778 RNA–protein pairs in 31.3 ms