RNA–Protein interactions for RNA: ENST00000460696.1

NPHP4-204, Transcript of nephrocystin 4, humanhuman

TSL 1 (best)

Gene NPHP4, Length 3,967 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP4-204ENST00000460696 FADS3Q9Y5Q0 445 aa11.52□□□□□ -0.57
NPHP4-204ENST00000460696 A0A0U1RQS6 177 aa11.52□□□□□ -0.57
NPHP4-204ENST00000460696 SLC22A2O15244 555 aa11.52□□□□□ -0.57
NPHP4-204ENST00000460696 GJA1P17302 382 aa11.52□□□□□ -0.57
NPHP4-204ENST00000460696 KCNA5P22460 613 aa11.52□□□□□ -0.57
NPHP4-204ENST00000460696 MAPK1P28482 360 aa11.52□□□□□ -0.57
NPHP4-204ENST00000460696 MTPNP58546 118 aa11.52□□□□□ -0.57
NPHP4-204ENST00000460696 TNK2Q07912 1038 aa11.52□□□□□ -0.57
NPHP4-204ENST00000460696 DMC1Q14565 340 aa11.52□□□□□ -0.57
NPHP4-204ENST00000460696 C16orf72Q14CZ0 275 aa11.52□□□□□ -0.57
NPHP4-204ENST00000460696 CCDC157Q569K6 752 aa11.52□□□□□ -0.57
NPHP4-204ENST00000460696 RAB41Q5JT25 222 aa11.52□□□□□ -0.57
NPHP4-204ENST00000460696 LYSMD3Q7Z3D4 306 aa11.52□□□□□ -0.57
NPHP4-204ENST00000460696 SPATA19Q7Z5L4 167 aa11.52□□□□□ -0.57
NPHP4-204ENST00000460696 ZNF598Q86UK7 904 aaKnown RBP11.52□□□□□ -0.57
NPHP4-204ENST00000460696 DGCR6LQ9BY27 220 aa11.52□□□□□ -0.57
NPHP4-204ENST00000460696 ATG10Q9H0Y0 220 aa11.52□□□□□ -0.57
NPHP4-204ENST00000460696 INTS10Q9NVR2 710 aaKnown RBP11.52□□□□□ -0.57
NPHP4-204ENST00000460696 HECAQ9UBI9 543 aaPredicted RBP11.52□□□□□ -0.57
NPHP4-204ENST00000460696 ZNF490Q9ULM2 529 aaPredicted RBP11.52□□□□□ -0.57
NPHP4-204ENST00000460696 OR1I1O60431 355 aa11.51□□□□□ -0.57
NPHP4-204ENST00000460696 WDR47O94967 919 aa11.51□□□□□ -0.57
NPHP4-204ENST00000460696 ZNF37AP17032 561 aaPredicted RBP11.51□□□□□ -0.57
NPHP4-204ENST00000460696 ITPKAP23677 461 aa11.51□□□□□ -0.57
NPHP4-204ENST00000460696 MAGEA10P43363 369 aaPredicted RBP11.51□□□□□ -0.57
NPHP4-204ENST00000460696 ABRQ12979 859 aa11.51□□□□□ -0.57
NPHP4-204ENST00000460696 TRMT11Q7Z4G4 463 aaKnown RBP11.51□□□□□ -0.57
NPHP4-204ENST00000460696 EID3Q8N140 333 aa11.51□□□□□ -0.57
NPHP4-204ENST00000460696 OR2T12Q8NG77 320 aa11.51□□□□□ -0.57
NPHP4-204ENST00000460696 TCF25Q9BQ70 676 aa11.51□□□□□ -0.57
NPHP4-204ENST00000460696 PAIP1Q9H074 479 aaKnown RBP11.51□□□□□ -0.57
NPHP4-204ENST00000460696 TBC1D23Q9NUY8 699 aa11.51□□□□□ -0.57
NPHP4-204ENST00000460696 SCN3BQ9NY72 215 aa11.51□□□□□ -0.57
NPHP4-204ENST00000460696 SLC13A4Q9UKG4 626 aa11.51□□□□□ -0.57
NPHP4-204ENST00000460696 CNTRLQ7Z7A1 2325 aa11.51□□□□□ -0.57
NPHP4-204ENST00000460696 ESR1P03372 595 aa11.51□□□□□ -0.57
NPHP4-204ENST00000460696 CACNG1Q06432 222 aa11.51□□□□□ -0.57
NPHP4-204ENST00000460696 SPDYE7PQ495Y7 208 aa11.51□□□□□ -0.57
NPHP4-204ENST00000460696 OTUD1Q5VV17 481 aaPredicted RBP11.51□□□□□ -0.57
NPHP4-204ENST00000460696 TMEM214Q6NUQ4 689 aaKnown RBP11.51□□□□□ -0.57
NPHP4-204ENST00000460696 KBTBD2Q8IY47 623 aa11.51□□□□□ -0.57
NPHP4-204ENST00000460696 MICU2Q8IYU8 434 aa11.51□□□□□ -0.57
NPHP4-204ENST00000460696 SPPL2AQ8TCT8 520 aa11.51□□□□□ -0.57
NPHP4-204ENST00000460696 DTNBP1Q96EV8 351 aa11.51□□□□□ -0.57
NPHP4-204ENST00000460696 BBS2Q9BXC9 721 aa11.51□□□□□ -0.57
NPHP4-204ENST00000460696 NKX2-4Q9H2Z4 354 aa11.51□□□□□ -0.57
NPHP4-204ENST00000460696 CLK4Q9HAZ1 481 aaKnown RBP11.51□□□□□ -0.57
NPHP4-204ENST00000460696 CSNK1G1Q9HCP0 422 aa11.51□□□□□ -0.57
NPHP4-204ENST00000460696 CD84Q9UIB8 345 aa11.51□□□□□ -0.57
NPHP4-204ENST00000460696 NUMBLQ9Y6R0 609 aa11.51□□□□□ -0.57
NPHP4-204ENST00000460696 H3BQ06 376 aaPredicted RBP11.51□□□□□ -0.57
NPHP4-204ENST00000460696 M0QZQ0 153 aa11.51□□□□□ -0.57
NPHP4-204ENST00000460696 BCAS2O75934 225 aaPredicted RBP11.51□□□□□ -0.57
NPHP4-204ENST00000460696 CDK14O94921 469 aa11.51□□□□□ -0.57
NPHP4-204ENST00000460696 GDF5P43026 501 aa11.51□□□□□ -0.57
NPHP4-204ENST00000460696 PTGER3P43115 390 aa11.51□□□□□ -0.57
NPHP4-204ENST00000460696 HMGCS1Q01581 520 aa11.51□□□□□ -0.57
NPHP4-204ENST00000460696 GRB7Q14451 532 aa11.51□□□□□ -0.57
NPHP4-204ENST00000460696 ACOX1Q15067 660 aa11.51□□□□□ -0.57
NPHP4-204ENST00000460696 RABL3Q5HYI8 236 aa11.51□□□□□ -0.57
NPHP4-204ENST00000460696 DNAJB7Q7Z6W7 309 aaPredicted RBP11.51□□□□□ -0.57
NPHP4-204ENST00000460696 ANKRD46Q86W74 232 aa11.51□□□□□ -0.57
NPHP4-204ENST00000460696 TMEM132CQ8N3T6 1108 aa11.51□□□□□ -0.57
NPHP4-204ENST00000460696 ING5Q8WYH8 240 aa11.51□□□□□ -0.57
NPHP4-204ENST00000460696 TMEM74Q96NL1 305 aa11.51□□□□□ -0.57
NPHP4-204ENST00000460696 C11orf84Q9BUA3 381 aaPredicted RBP11.51□□□□□ -0.57
NPHP4-204ENST00000460696 KNTC1P50748 2209 aa11.5□□□□□ -0.57
NPHP4-204ENST00000460696 C5orf58C9J3I9 102 aa11.5□□□□□ -0.57
NPHP4-204ENST00000460696 KERAO60938 352 aa11.5□□□□□ -0.57
NPHP4-204ENST00000460696 PAPSS2O95340 614 aaPredicted RBP11.5□□□□□ -0.57
NPHP4-204ENST00000460696 CST1P01037 141 aa11.5□□□□□ -0.57
NPHP4-204ENST00000460696 CYP11A1P05108 521 aa11.5□□□□□ -0.57
NPHP4-204ENST00000460696 GKP32189 559 aa11.5□□□□□ -0.57
NPHP4-204ENST00000460696 CSKP41240 450 aa11.5□□□□□ -0.57
NPHP4-204ENST00000460696 DGKQP52824 942 aa11.5□□□□□ -0.57
NPHP4-204ENST00000460696 MS4A2Q01362 244 aa11.5□□□□□ -0.57
NPHP4-204ENST00000460696 GTF2H2Q13888 395 aa11.5□□□□□ -0.57
NPHP4-204ENST00000460696 CNPY1Q3B7I2 92 aa11.5□□□□□ -0.57
NPHP4-204ENST00000460696 RTP2Q5QGT7 225 aa11.5□□□□□ -0.57
NPHP4-204ENST00000460696 GTF2H2CQ6P1K8 395 aa11.5□□□□□ -0.57
NPHP4-204ENST00000460696 CERS6Q6ZMG9 384 aa11.5□□□□□ -0.57
NPHP4-204ENST00000460696 SH2D5Q6ZV89 423 aa11.5□□□□□ -0.57
NPHP4-204ENST00000460696 MRPL10Q7Z7H8 261 aaKnown RBP11.5□□□□□ -0.57
NPHP4-204ENST00000460696 ROPN1LQ96C74 230 aa11.5□□□□□ -0.57
NPHP4-204ENST00000460696 APOLD1Q96LR9 279 aa11.5□□□□□ -0.57
NPHP4-204ENST00000460696 RIBC2Q9H4K1 309 aa11.5□□□□□ -0.57
NPHP4-204ENST00000460696 SPG21Q9NZD8 308 aa11.5□□□□□ -0.57
NPHP4-204ENST00000460696 FNIP2Q9P278 1114 aa11.5□□□□□ -0.57
NPHP4-204ENST00000460696 TBC1D30Q9Y2I9 924 aa11.5□□□□□ -0.57
NPHP4-204ENST00000460696 TRAV19A0A0A6YYK7 116 aa11.5□□□□□ -0.57
NPHP4-204ENST00000460696 LOC107983988A0A1B0GUW6 1196 aaPredicted RBP11.5□□□□□ -0.57
NPHP4-204ENST00000460696 ZSCAN9O15535 394 aaPredicted RBP11.5□□□□□ -0.57
NPHP4-204ENST00000460696 GJB3O75712 270 aa11.5□□□□□ -0.57
NPHP4-204ENST00000460696 STK16O75716 305 aa11.5□□□□□ -0.57
NPHP4-204ENST00000460696 GNPDA1P46926 289 aa11.5□□□□□ -0.57
NPHP4-204ENST00000460696 MCCD1P59942 119 aaPredicted RBP11.5□□□□□ -0.57
NPHP4-204ENST00000460696 POLR2LP62875 67 aaKnown RBP11.5□□□□□ -0.57
NPHP4-204ENST00000460696 CYP4F8P98187 520 aa11.5□□□□□ -0.57
NPHP4-204ENST00000460696 PPP1R8Q12972 351 aaKnown RBP11.5□□□□□ -0.57
NPHP4-204ENST00000460696 UNC50Q53HI1 259 aa11.5□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 33.9 ms