RNA–Protein interactions for RNA: ENST00000437679.3

LIMS3-201, Transcript of LIM zinc finger domain containing 3, humanhuman

TSL 1 (best) BASIC

Gene LIMS3, Length 1,220 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS3-201ENST00000437679 C4orf22Q6V702 233 aa14.95□□□□□ -0.02
LIMS3-201ENST00000437679 LRRC69Q6ZNQ3 347 aa14.95□□□□□ -0.02
LIMS3-201ENST00000437679 SNX20Q7Z614 316 aa14.95□□□□□ -0.02
LIMS3-201ENST00000437679 C11orf96Q7Z7L8 435 aa14.95□□□□□ -0.02
LIMS3-201ENST00000437679 PRUNE1Q86TP1 453 aa14.95□□□□□ -0.02
LIMS3-201ENST00000437679 ZNF761Q86XN6 746 aaPredicted RBP14.95□□□□□ -0.02
LIMS3-201ENST00000437679 SLITRK4Q8IW52 837 aa14.95□□□□□ -0.02
LIMS3-201ENST00000437679 TRIM48Q8IWZ4 208 aa14.95□□□□□ -0.02
LIMS3-201ENST00000437679 OR52K1Q8NGK4 314 aa14.95□□□□□ -0.02
LIMS3-201ENST00000437679 OR10G6Q8NH81 332 aa14.95□□□□□ -0.02
LIMS3-201ENST00000437679 STYXQ8WUJ0 223 aa14.95□□□□□ -0.02
LIMS3-201ENST00000437679 TMEM159Q96B96 161 aa14.95□□□□□ -0.02
LIMS3-201ENST00000437679 DNAJC1Q96KC8 554 aaKnown RBP14.95□□□□□ -0.02
LIMS3-201ENST00000437679 SLC46A1Q96NT5 459 aa14.95□□□□□ -0.02
LIMS3-201ENST00000437679 NUDT22Q9BRQ3 303 aa14.95□□□□□ -0.02
LIMS3-201ENST00000437679 LDHAL6BQ9BYZ2 381 aaPredicted RBP14.95□□□□□ -0.02
LIMS3-201ENST00000437679 NLE1Q9NVX2 485 aaPredicted RBP14.95□□□□□ -0.02
LIMS3-201ENST00000437679 AKAP7Q9P0M2 348 aaPredicted RBP14.95□□□□□ -0.02
LIMS3-201ENST00000437679 CELSR3Q9NYQ7 3312 aa14.95□□□□□ -0.02
LIMS3-201ENST00000437679 A0A087WV48 116 aa14.94□□□□□ -0.02
LIMS3-201ENST00000437679 CFAP99D6REC4 459 aa14.94□□□□□ -0.02
LIMS3-201ENST00000437679 CCL22O00626 93 aa14.94□□□□□ -0.02
LIMS3-201ENST00000437679 DUX1O43812 170 aa14.94□□□□□ -0.02
LIMS3-201ENST00000437679 SUN1O94901 812 aa14.94□□□□□ -0.02
LIMS3-201ENST00000437679 TNFSF15O95150 251 aa14.94□□□□□ -0.02
LIMS3-201ENST00000437679 VIPP01282 170 aa14.94□□□□□ -0.02
LIMS3-201ENST00000437679 JMJD7P0C870 316 aa14.94□□□□□ -0.02
LIMS3-201ENST00000437679 XRCC1P18887 633 aaPredicted RBP14.94□□□□□ -0.02
LIMS3-201ENST00000437679 RPL10P27635 214 aaKnown RBP14.94□□□□□ -0.02
LIMS3-201ENST00000437679 MC4RP32245 332 aa14.94□□□□□ -0.02
LIMS3-201ENST00000437679 EIF2S3P41091 472 aaKnown RBP14.94□□□□□ -0.02
LIMS3-201ENST00000437679 PCBP4P57723 403 aaKnown RBP14.94□□□□□ -0.02
LIMS3-201ENST00000437679 SQSTM1Q13501 440 aa14.94□□□□□ -0.02
LIMS3-201ENST00000437679 LAMB3Q13751 1172 aa14.94□□□□□ -0.02
LIMS3-201ENST00000437679 GPR33Q49SQ1 333 aa14.94□□□□□ -0.02
LIMS3-201ENST00000437679 FNBP1LQ5T0N5 605 aa14.94□□□□□ -0.02
LIMS3-201ENST00000437679 AGAP9Q5VTM2 703 aa14.94□□□□□ -0.02
LIMS3-201ENST00000437679 ABRAXAS1Q6UWZ7 409 aa14.94□□□□□ -0.02
LIMS3-201ENST00000437679 WASH2PQ6VEQ5 465 aa14.94□□□□□ -0.02
LIMS3-201ENST00000437679 DET1Q7L5Y6 550 aa14.94□□□□□ -0.02
LIMS3-201ENST00000437679 TMPRSS9Q7Z410 1059 aa14.94□□□□□ -0.02
LIMS3-201ENST00000437679 REXO1L1PQ8IX06 675 aa14.94□□□□□ -0.02
LIMS3-201ENST00000437679 HEXDCQ8WVB3 486 aa14.94□□□□□ -0.02
LIMS3-201ENST00000437679 SGF29Q96ES7 293 aa14.94□□□□□ -0.02
LIMS3-201ENST00000437679 PRR11Q96HE9 360 aaPredicted RBP14.94□□□□□ -0.02
LIMS3-201ENST00000437679 PBKQ96KB5 322 aa14.94□□□□□ -0.02
LIMS3-201ENST00000437679 CMKLR1Q99788 373 aa14.94□□□□□ -0.02
LIMS3-201ENST00000437679 KCNF1Q9H3M0 494 aa14.94□□□□□ -0.02
LIMS3-201ENST00000437679 SEMA6CQ9H3T2 930 aa14.94□□□□□ -0.02
LIMS3-201ENST00000437679 FAM96AQ9H5X1 160 aa14.94□□□□□ -0.02
LIMS3-201ENST00000437679 ASCL3Q9NQ33 180 aa14.94□□□□□ -0.02
LIMS3-201ENST00000437679 WASH6PQ9NQA3 447 aa14.94□□□□□ -0.02
LIMS3-201ENST00000437679 LOXL2Q9Y4K0 774 aa14.94□□□□□ -0.02
LIMS3-201ENST00000437679 PMS2P1A4D2B8 440 aa14.93□□□□□ -0.02
LIMS3-201ENST00000437679 KLHL33A6NCF5 533 aa14.93□□□□□ -0.02
LIMS3-201ENST00000437679 PRR19A6NJB7 356 aa14.93□□□□□ -0.02
LIMS3-201ENST00000437679 AGAP14A8MT82 685 aa14.93□□□□□ -0.02
LIMS3-201ENST00000437679 H7C0S8 307 aa14.93□□□□□ -0.02
LIMS3-201ENST00000437679 KIF5CO60282 957 aa14.93□□□□□ -0.02
LIMS3-201ENST00000437679 APRTP07741 180 aa14.93□□□□□ -0.02
LIMS3-201ENST00000437679 ITGA2BP08514 1039 aa14.93□□□□□ -0.02
LIMS3-201ENST00000437679 ZSCAN5DPP0CG00 497 aa14.93□□□□□ -0.02
LIMS3-201ENST00000437679 PBLDP30039 288 aaPredicted RBP14.93□□□□□ -0.02
LIMS3-201ENST00000437679 RPL22P35268 128 aaKnown RBP14.93□□□□□ -0.02
LIMS3-201ENST00000437679 HALP42357 657 aa14.93□□□□□ -0.02
LIMS3-201ENST00000437679 LIMK2P53671 638 aa14.93□□□□□ -0.02
LIMS3-201ENST00000437679 EPHA4P54764 986 aa14.93□□□□□ -0.02
LIMS3-201ENST00000437679 DRG2P55039 364 aaKnown RBP14.93□□□□□ -0.02
LIMS3-201ENST00000437679 UBE2IP63279 158 aaKnown RBP14.93□□□□□ -0.02
LIMS3-201ENST00000437679 DMPKQ09013 629 aa14.93□□□□□ -0.02
LIMS3-201ENST00000437679 TRA2AQ13595 282 aaKnown RBP eCLIP14.93□□□□□ -0.02
LIMS3-201ENST00000437679 SKIDA1Q1XH10 827 aa14.93□□□□□ -0.02
LIMS3-201ENST00000437679 ZRANB3Q5FWF4 1079 aa14.93□□□□□ -0.02
LIMS3-201ENST00000437679 TMEM71Q6P5X7 295 aa14.93□□□□□ -0.02
LIMS3-201ENST00000437679 C19orf48Q6RUI8 117 aa14.93□□□□□ -0.02
LIMS3-201ENST00000437679 NXPE1Q8N323 547 aa14.93□□□□□ -0.02
LIMS3-201ENST00000437679 GLIS1Q8NBF1 620 aa14.93□□□□□ -0.02
LIMS3-201ENST00000437679 ZNF248Q8NDW4 579 aa14.93□□□□□ -0.02
LIMS3-201ENST00000437679 OR4D9Q8NGE8 314 aa14.93□□□□□ -0.02
LIMS3-201ENST00000437679 HNRNPLLQ8WVV9 542 aaKnown RBP14.93□□□□□ -0.02
LIMS3-201ENST00000437679 CXorf40BQ96DE9 158 aa14.93□□□□□ -0.02
LIMS3-201ENST00000437679 CDKN2AIPNLQ96HQ2 116 aa14.93□□□□□ -0.02
LIMS3-201ENST00000437679 NAP1L3Q99457 506 aaPredicted RBP14.93□□□□□ -0.02
LIMS3-201ENST00000437679 COPS8Q99627 209 aa14.93□□□□□ -0.02
LIMS3-201ENST00000437679 EPB41L1Q9H4G0 881 aa14.93□□□□□ -0.02
LIMS3-201ENST00000437679 TRMT1Q9NXH9 659 aaKnown RBP14.93□□□□□ -0.02
LIMS3-201ENST00000437679 SCHIP1Q9P0W5 487 aaPredicted RBP14.93□□□□□ -0.02
LIMS3-201ENST00000437679 PISDQ9UG56 409 aa14.93□□□□□ -0.02
LIMS3-201ENST00000437679 DSPP15924 2871 aaKnown RBP14.93□□□□□ -0.02
LIMS3-201ENST00000437679 IGHV5-10-1A0A0J9YXX1 117 aa14.92□□□□□ -0.02
LIMS3-201ENST00000437679 HEATR9A2RTY3 570 aa14.92□□□□□ -0.02
LIMS3-201ENST00000437679 MROH6A6NGR9 719 aa14.92□□□□□ -0.02
LIMS3-201ENST00000437679 AGRPO00253 132 aa14.92□□□□□ -0.02
LIMS3-201ENST00000437679 HGSO14964 777 aaPredicted RBP14.92□□□□□ -0.02
LIMS3-201ENST00000437679 HGFP14210 728 aa14.92□□□□□ -0.02
LIMS3-201ENST00000437679 HOXB3P14651 431 aaPredicted RBP14.92□□□□□ -0.02
LIMS3-201ENST00000437679 CSF2RBP32927 897 aa14.92□□□□□ -0.02
LIMS3-201ENST00000437679 SLC19A1P41440 591 aa14.92□□□□□ -0.02
LIMS3-201ENST00000437679 MAPK9P45984 424 aa14.92□□□□□ -0.02
LIMS3-201ENST00000437679 KCNJ1P48048 391 aa14.92□□□□□ -0.02
Retrieved 100 of 20,778 RNA–protein pairs in 30.7 ms