RNA–Protein interactions for RNA: ENST00000432425.5

CLK1-204, Transcript of CDC like kinase 1, humanhuman

TSL 1 (best)

Gene CLK1, Length 1,682 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK1-204ENST00000432425 NFKBIAP25963 317 aa3.14□□□□□ -1.91
CLK1-204ENST00000432425 NR2C2P49116 596 aa3.14□□□□□ -1.91
CLK1-204ENST00000432425 GALCP54803 685 aa3.14□□□□□ -1.91
CLK1-204ENST00000432425 G3BP1Q13283 466 aaKnown RBP eCLIP3.14□□□□□ -1.91
CLK1-204ENST00000432425 FCN2Q15485 313 aa3.14□□□□□ -1.91
CLK1-204ENST00000432425 ALFQ53S48 1182 aa3.14□□□□□ -1.91
CLK1-204ENST00000432425 RBMS3Q6XE24 437 aaKnown RBP3.14□□□□□ -1.91
CLK1-204ENST00000432425 HIST3H2AQ7L7L0 130 aa3.14□□□□□ -1.91
CLK1-204ENST00000432425 RASGEF1CQ8N431 466 aa3.14□□□□□ -1.91
CLK1-204ENST00000432425 C1orf52Q8N6N3 182 aaKnown RBP3.14□□□□□ -1.91
CLK1-204ENST00000432425 SLC38A9Q8NBW4 561 aa3.14□□□□□ -1.91
CLK1-204ENST00000432425 ADAD2Q8NCV1 583 aaKnown RBP3.14□□□□□ -1.91
CLK1-204ENST00000432425 ZBTB20Q9HC78 741 aaPredicted RBP3.14□□□□□ -1.91
CLK1-204ENST00000432425 SMC4Q9NTJ3 1288 aa3.14□□□□□ -1.91
CLK1-204ENST00000432425 MTMR6Q9Y217 621 aa3.14□□□□□ -1.91
CLK1-204ENST00000432425 KCNK7Q9Y2U2 307 aa3.14□□□□□ -1.91
CLK1-204ENST00000432425 C2CD2Q9Y426 696 aa3.14□□□□□ -1.91
CLK1-204ENST00000432425 TMEM184BQ9Y519 407 aaPredicted RBP3.14□□□□□ -1.91
CLK1-204ENST00000432425 ZBTB43O43298 467 aa3.13□□□□□ -1.91
CLK1-204ENST00000432425 GPC4O75487 556 aa3.13□□□□□ -1.91
CLK1-204ENST00000432425 TMEM63AO94886 807 aa3.13□□□□□ -1.91
CLK1-204ENST00000432425 BMP10O95393 424 aa3.13□□□□□ -1.91
CLK1-204ENST00000432425 EIF2S1P05198 315 aaKnown RBP3.13□□□□□ -1.91
CLK1-204ENST00000432425 TMEM11P17152 192 aa3.13□□□□□ -1.91
CLK1-204ENST00000432425 GNAZP19086 355 aa3.13□□□□□ -1.91
CLK1-204ENST00000432425 PSMA4P25789 261 aaKnown RBP3.13□□□□□ -1.91
CLK1-204ENST00000432425 DRG2P55039 364 aaKnown RBP3.13□□□□□ -1.91
CLK1-204ENST00000432425 CD81P60033 236 aa3.13□□□□□ -1.91
CLK1-204ENST00000432425 SETQ01105 290 aaPredicted RBP3.13□□□□□ -1.91
CLK1-204ENST00000432425 DUOXA1Q1HG43 343 aa3.13□□□□□ -1.91
CLK1-204ENST00000432425 ZC2HC1CQ53FD0 456 aaPredicted RBP3.13□□□□□ -1.91
CLK1-204ENST00000432425 ACSM2BQ68CK6 577 aa3.13□□□□□ -1.91
CLK1-204ENST00000432425 GLDNQ6ZMI3 551 aaPredicted RBP3.13□□□□□ -1.91
CLK1-204ENST00000432425 C15orf39Q6ZRI6 1047 aa3.13□□□□□ -1.91
CLK1-204ENST00000432425 ANO5Q75V66 913 aa3.13□□□□□ -1.91
CLK1-204ENST00000432425 PDILTQ8N807 584 aa3.13□□□□□ -1.91
CLK1-204ENST00000432425 ZNF473Q8WTR7 871 aaKnown RBP3.13□□□□□ -1.91
CLK1-204ENST00000432425 ZKSCAN4Q969J2 545 aaPredicted RBP3.13□□□□□ -1.91
CLK1-204ENST00000432425 PRMT6Q96LA8 375 aaPredicted RBP3.13□□□□□ -1.91
CLK1-204ENST00000432425 PPM1MQ96MI6 270 aa3.13□□□□□ -1.91
CLK1-204ENST00000432425 NUDCD1Q96RS6 583 aa3.13□□□□□ -1.91
CLK1-204ENST00000432425 NCAPGQ9BPX3 1015 aa3.13□□□□□ -1.91
CLK1-204ENST00000432425 SLC38A7Q9NVC3 462 aa3.13□□□□□ -1.91
CLK1-204ENST00000432425 MTMR10Q9NXD2 777 aa3.13□□□□□ -1.91
CLK1-204ENST00000432425 DBNLQ9UJU6 430 aaKnown RBP3.13□□□□□ -1.91
CLK1-204ENST00000432425 IGKV3D-15A0A087WSY6 115 aa3.12□□□□□ -1.91
CLK1-204ENST00000432425 CCDC189A1A4V9 331 aa3.12□□□□□ -1.91
CLK1-204ENST00000432425 C5orf60A6NFR6 353 aa3.12□□□□□ -1.91
CLK1-204ENST00000432425 HHLA1C9JL84 531 aa3.12□□□□□ -1.91
CLK1-204ENST00000432425 SMAD9O15198 467 aaKnown RBP3.12□□□□□ -1.91
CLK1-204ENST00000432425 LIPFP07098 398 aa3.12□□□□□ -1.91
CLK1-204ENST00000432425 ZNF883P0CG24 379 aa3.12□□□□□ -1.91
CLK1-204ENST00000432425 PRSS56P0CW18 603 aa3.12□□□□□ -1.91
CLK1-204ENST00000432425 MSH3P20585 1137 aa3.12□□□□□ -1.91
CLK1-204ENST00000432425 HOXC8P31273 242 aa3.12□□□□□ -1.91
CLK1-204ENST00000432425 MED22Q15528 200 aa3.12□□□□□ -1.91
CLK1-204ENST00000432425 ZSCAN23Q3MJ62 389 aa3.12□□□□□ -1.91
CLK1-204ENST00000432425 NDUFAF5Q5TEU4 345 aa3.12□□□□□ -1.91
CLK1-204ENST00000432425 NCEH1Q6PIU2 408 aa3.12□□□□□ -1.91
CLK1-204ENST00000432425 APLFQ8IW19 511 aaPredicted RBP3.12□□□□□ -1.91
CLK1-204ENST00000432425 GSDMBQ8TAX9 411 aa3.12□□□□□ -1.91
CLK1-204ENST00000432425 FCAMRQ8WWV6 532 aa3.12□□□□□ -1.91
CLK1-204ENST00000432425 POMGNT1Q8WZA1 660 aa3.12□□□□□ -1.91
CLK1-204ENST00000432425 LRR1Q96L50 414 aa3.12□□□□□ -1.91
CLK1-204ENST00000432425 C7orf26Q96N11 449 aa3.12□□□□□ -1.91
CLK1-204ENST00000432425 GFRA4Q9GZZ7 299 aa3.12□□□□□ -1.91
CLK1-204ENST00000432425 UBA5Q9GZZ9 404 aa3.12□□□□□ -1.91
CLK1-204ENST00000432425 UNC45AQ9H3U1 944 aa3.12□□□□□ -1.91
CLK1-204ENST00000432425 APOBEC3GQ9HC16 384 aaKnown RBP3.12□□□□□ -1.91
CLK1-204ENST00000432425 ADPRHL2Q9NX46 363 aa3.12□□□□□ -1.91
CLK1-204ENST00000432425 ACAD8Q9UKU7 415 aa3.12□□□□□ -1.91
CLK1-204ENST00000432425 B3GALT5Q9Y2C3 310 aa3.12□□□□□ -1.91
CLK1-204ENST00000432425 YIPF1Q9Y548 306 aa3.12□□□□□ -1.91
CLK1-204ENST00000432425 DUXAA6NLW8 204 aa3.11□□□□□ -1.91
CLK1-204ENST00000432425 SCAMP1O15126 338 aa3.11□□□□□ -1.91
CLK1-204ENST00000432425 OGG1O15527 345 aa3.11□□□□□ -1.91
CLK1-204ENST00000432425 PLPP2O43688 288 aa3.11□□□□□ -1.91
CLK1-204ENST00000432425 TMCC2O75069 709 aa3.11□□□□□ -1.91
CLK1-204ENST00000432425 ERVK-10P10266 1014 aa3.11□□□□□ -1.91
CLK1-204ENST00000432425 ACTN1P12814 892 aa3.11□□□□□ -1.91
CLK1-204ENST00000432425 CDH2P19022 906 aaPredicted RBP3.11□□□□□ -1.91
CLK1-204ENST00000432425 ANXA7P20073 488 aaKnown RBP3.11□□□□□ -1.91
CLK1-204ENST00000432425 HRH2P25021 359 aa3.11□□□□□ -1.91
CLK1-204ENST00000432425 MSH2P43246 934 aa3.11□□□□□ -1.91
CLK1-204ENST00000432425 RAB6CQ53S08 254 aa3.11□□□□□ -1.91
CLK1-204ENST00000432425 FAM43BQ6ZT52 329 aaPredicted RBP3.11□□□□□ -1.91
CLK1-204ENST00000432425 FAM9BQ8IZU0 186 aa3.11□□□□□ -1.91
CLK1-204ENST00000432425 ZNF485Q8NCK3 441 aa3.11□□□□□ -1.91
CLK1-204ENST00000432425 TDRD7Q8NHU6 1098 aaKnown RBP3.11□□□□□ -1.91
CLK1-204ENST00000432425 TRPC4APQ8TEL6 797 aa3.11□□□□□ -1.91
CLK1-204ENST00000432425 MOAP1Q96BY2 351 aa3.11□□□□□ -1.91
CLK1-204ENST00000432425 C1orf74Q96LT6 269 aa3.11□□□□□ -1.91
CLK1-204ENST00000432425 SLX1AQ9BQ83 275 aa3.11□□□□□ -1.91
CLK1-204ENST00000432425 PSD2Q9BQI7 771 aa3.11□□□□□ -1.91
CLK1-204ENST00000432425 RAB6CQ9H0N0 254 aa3.11□□□□□ -1.91
CLK1-204ENST00000432425 RAD21L1Q9H4I0 556 aa3.11□□□□□ -1.91
CLK1-204ENST00000432425 DIAPH3Q9NSV4 1193 aa3.11□□□□□ -1.91
CLK1-204ENST00000432425 INTS10Q9NVR2 710 aaKnown RBP3.11□□□□□ -1.91
CLK1-204ENST00000432425 RCC2Q9P258 522 aaKnown RBP3.11□□□□□ -1.91
CLK1-204ENST00000432425 SNED1Q8TER0 1413 aa3.11□□□□□ -1.91
Retrieved 100 of 20,778 RNA–protein pairs in 34.3 ms