RNA–Protein interactions for RNA: ENST00000429035.1

SDC1-204, Transcript of syndecan 1, humanhuman

TSL 3

Gene SDC1, Length 646 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-204ENST00000429035 C9P02748 559 aa14.26□□□□□ -0.13
SDC1-204ENST00000429035 XRCC1P18887 633 aaPredicted RBP14.26□□□□□ -0.13
SDC1-204ENST00000429035 NFKB1P19838 968 aa14.26□□□□□ -0.13
SDC1-204ENST00000429035 SPAM1P38567 509 aa14.26□□□□□ -0.13
SDC1-204ENST00000429035 PLCL1Q15111 1095 aa14.26□□□□□ -0.13
SDC1-204ENST00000429035 PPP2R5EQ16537 467 aa14.26□□□□□ -0.13
SDC1-204ENST00000429035 ATP13A5Q4VNC0 1218 aa14.26□□□□□ -0.13
SDC1-204ENST00000429035 LACTB2Q53H82 288 aaPredicted RBP14.26□□□□□ -0.13
SDC1-204ENST00000429035 TEX44Q53QW1 395 aa14.26□□□□□ -0.13
SDC1-204ENST00000429035 C6orf15Q6UXA7 325 aaPredicted RBP14.26□□□□□ -0.13
SDC1-204ENST00000429035 MFSD7Q6UXD7 560 aa14.26□□□□□ -0.13
SDC1-204ENST00000429035 GLT6D1Q7Z4J2 308 aa14.26□□□□□ -0.13
SDC1-204ENST00000429035 ZNF547Q8IVP9 402 aa14.26□□□□□ -0.13
SDC1-204ENST00000429035 RHOT1Q8IXI2 618 aa14.26□□□□□ -0.13
SDC1-204ENST00000429035 BLOC1S5Q8TDH9 187 aa14.26□□□□□ -0.13
SDC1-204ENST00000429035 TFB1MQ8WVM0 346 aaKnown RBP14.26□□□□□ -0.13
SDC1-204ENST00000429035 CCDC42Q96M95 316 aa14.26□□□□□ -0.13
SDC1-204ENST00000429035 CHP1Q99653 195 aa14.26□□□□□ -0.13
SDC1-204ENST00000429035 SPRY4Q9C004 299 aa14.26□□□□□ -0.13
SDC1-204ENST00000429035 ZCCHC2Q9C0B9 1178 aaKnown RBP14.26□□□□□ -0.13
SDC1-204ENST00000429035 ZNF768Q9H5H4 540 aaKnown RBP14.26□□□□□ -0.13
SDC1-204ENST00000429035 UCK1Q9HA47 277 aa14.26□□□□□ -0.13
SDC1-204ENST00000429035 ABHD10Q9NUJ1 306 aa14.26□□□□□ -0.13
SDC1-204ENST00000429035 DDX56Q9NY93 547 aaKnown RBP14.26□□□□□ -0.13
SDC1-204ENST00000429035 SAE1Q9UBE0 346 aaPredicted RBP14.26□□□□□ -0.13
SDC1-204ENST00000429035 FAM8A1Q9UBU6 413 aa14.26□□□□□ -0.13
SDC1-204ENST00000429035 CDC14CA4D256 554 aa14.25□□□□□ -0.13
SDC1-204ENST00000429035 BUD23O43709 281 aaKnown RBP14.25□□□□□ -0.13
SDC1-204ENST00000429035 BRAFP15056 766 aa14.25□□□□□ -0.13
SDC1-204ENST00000429035 PECAM1P16284 738 aaPredicted RBP14.25□□□□□ -0.13
SDC1-204ENST00000429035 NR1D1P20393 614 aa14.25□□□□□ -0.13
SDC1-204ENST00000429035 F8A1P23610 371 aa14.25□□□□□ -0.13
SDC1-204ENST00000429035 ARHGAP25P42331 645 aa14.25□□□□□ -0.13
SDC1-204ENST00000429035 CHRNA4P43681 627 aa14.25□□□□□ -0.13
SDC1-204ENST00000429035 WNT3AP56704 352 aa14.25□□□□□ -0.13
SDC1-204ENST00000429035 PPP1CAP62136 330 aa14.25□□□□□ -0.13
SDC1-204ENST00000429035 TMEM115Q12893 351 aaPredicted RBP14.25□□□□□ -0.13
SDC1-204ENST00000429035 MAP7Q14244 749 aa14.25□□□□□ -0.13
SDC1-204ENST00000429035 ERV3-1Q14264 604 aa14.25□□□□□ -0.13
SDC1-204ENST00000429035 SLC14A2Q15849 920 aa14.25□□□□□ -0.13
SDC1-204ENST00000429035 ASTE1Q2TB18 679 aaPredicted RBP14.25□□□□□ -0.13
SDC1-204ENST00000429035 ZC3H18Q86VM9 953 aaKnown RBP14.25□□□□□ -0.13
SDC1-204ENST00000429035 VSIG1Q86XK7 387 aa14.25□□□□□ -0.13
SDC1-204ENST00000429035 IPMKQ8NFU5 416 aa14.25□□□□□ -0.13
SDC1-204ENST00000429035 GPR150Q8NGU9 434 aa14.25□□□□□ -0.13
SDC1-204ENST00000429035 ZDHHC12Q96GR4 267 aa14.25□□□□□ -0.13
SDC1-204ENST00000429035 ABHD17AQ96GS6 310 aa14.25□□□□□ -0.13
SDC1-204ENST00000429035 VPS35Q96QK1 796 aa14.25□□□□□ -0.13
SDC1-204ENST00000429035 DNAJC7Q99615 494 aa14.25□□□□□ -0.13
SDC1-204ENST00000429035 NHEJ1Q9H9Q4 299 aaPredicted RBP14.25□□□□□ -0.13
SDC1-204ENST00000429035 FAM153AQ9UHL3 310 aa14.25□□□□□ -0.13
SDC1-204ENST00000429035 PSMD13Q9UNM6 376 aa14.25□□□□□ -0.13
SDC1-204ENST00000429035 WDR37Q9Y2I8 494 aa14.25□□□□□ -0.13
SDC1-204ENST00000429035 TNRC6AQ8NDV7 1962 aaKnown RBP14.24□□□□□ -0.13
SDC1-204ENST00000429035 OR2AG2A6NM03 316 aa14.24□□□□□ -0.13
SDC1-204ENST00000429035 CST8O60676 142 aa14.24□□□□□ -0.13
SDC1-204ENST00000429035 MFAP3LO75121 409 aa14.24□□□□□ -0.13
SDC1-204ENST00000429035 COMTP21964 271 aa14.24□□□□□ -0.13
SDC1-204ENST00000429035 AKT1P31749 480 aa14.24□□□□□ -0.13
SDC1-204ENST00000429035 TUBB3Q13509 450 aa14.24□□□□□ -0.13
SDC1-204ENST00000429035 TFDP2Q14188 446 aa14.24□□□□□ -0.13
SDC1-204ENST00000429035 PRKD1Q15139 912 aaPredicted RBP14.24□□□□□ -0.13
SDC1-204ENST00000429035 CHRNA6Q15825 494 aa14.24□□□□□ -0.13
SDC1-204ENST00000429035 ABRAXAS1Q6UWZ7 409 aa14.24□□□□□ -0.13
SDC1-204ENST00000429035 BZW1Q7L1Q6 419 aaKnown RBP14.24□□□□□ -0.13
SDC1-204ENST00000429035 DET1Q7L5Y6 550 aa14.24□□□□□ -0.13
SDC1-204ENST00000429035 PRSS42Q7Z5A4 293 aa14.24□□□□□ -0.13
SDC1-204ENST00000429035 PPP1R3BQ86XI6 285 aa14.24□□□□□ -0.13
SDC1-204ENST00000429035 CCDC50Q8IVM0 306 aa14.24□□□□□ -0.13
SDC1-204ENST00000429035 TADA1Q96BN2 335 aa14.24□□□□□ -0.13
SDC1-204ENST00000429035 TEKT5Q96M29 485 aa14.24□□□□□ -0.13
SDC1-204ENST00000429035 SRPK1Q96SB4 655 aaKnown RBP14.24□□□□□ -0.13
SDC1-204ENST00000429035 FSD1LQ9BXM9 530 aa14.24□□□□□ -0.13
SDC1-204ENST00000429035 IMP3Q9NV31 184 aaKnown RBP14.24□□□□□ -0.13
SDC1-204ENST00000429035 ANAPC2Q9UJX6 822 aa14.24□□□□□ -0.13
SDC1-204ENST00000429035 TMPRSS11EQ9UL52 423 aa14.24□□□□□ -0.13
SDC1-204ENST00000429035 TP53TG5Q9Y2B4 290 aa14.24□□□□□ -0.13
SDC1-204ENST00000429035 KCTD3Q9Y597 815 aa14.24□□□□□ -0.13
SDC1-204ENST00000429035 PTPN13Q12923 2485 aa14.24□□□□□ -0.13
SDC1-204ENST00000429035 NBASA2RRP1 2371 aa14.24□□□□□ -0.13
SDC1-204ENST00000429035 GLYATL1P3A0A0U1RQE8 302 aa14.23□□□□□ -0.13
SDC1-204ENST00000429035 PRR19A6NJB7 356 aa14.23□□□□□ -0.13
SDC1-204ENST00000429035 UGT1A9O60656 530 aa14.23□□□□□ -0.13
SDC1-204ENST00000429035 SPAG6O75602 509 aa14.23□□□□□ -0.13
SDC1-204ENST00000429035 UGT1A6P19224 532 aa14.23□□□□□ -0.13
SDC1-204ENST00000429035 UGT1A1P22309 533 aa14.23□□□□□ -0.13
SDC1-204ENST00000429035 UGT1A4P22310 534 aa14.23□□□□□ -0.13
SDC1-204ENST00000429035 CD68P34810 354 aaPredicted RBP14.23□□□□□ -0.13
SDC1-204ENST00000429035 CASRP41180 1078 aa14.23□□□□□ -0.13
SDC1-204ENST00000429035 SLC1A1P43005 524 aa14.23□□□□□ -0.13
SDC1-204ENST00000429035 ARL4DP49703 201 aa14.23□□□□□ -0.13
SDC1-204ENST00000429035 XRCC4Q13426 336 aa14.23□□□□□ -0.13
SDC1-204ENST00000429035 NFE2L1Q14494 772 aa14.23□□□□□ -0.13
SDC1-204ENST00000429035 KCNAB1Q14722 419 aa14.23□□□□□ -0.13
SDC1-204ENST00000429035 IGFBP7Q16270 282 aa14.23□□□□□ -0.13
SDC1-204ENST00000429035 SIRPB2Q5JXA9 342 aa14.23□□□□□ -0.13
SDC1-204ENST00000429035 LRRC38Q5VT99 294 aa14.23□□□□□ -0.13
SDC1-204ENST00000429035 CYB5D1Q6P9G0 228 aa14.23□□□□□ -0.13
SDC1-204ENST00000429035 SPOCD1Q6ZMY3 1216 aa14.23□□□□□ -0.13
SDC1-204ENST00000429035 AMZ2Q86W34 360 aa14.23□□□□□ -0.13
Retrieved 100 of 20,778 RNA–protein pairs in 42 ms