RNA–Protein interactions for RNA: ENST00000425048.1

LINC01040-201, Transcript of long intergenic non-protein coding RNA 1040, humanhuman

TSL 2 BASIC

Gene LINC01040, Length 666 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC01040-201ENST00000425048 SNX16P57768 344 aa4.09□□□□□ -1.75
LINC01040-201ENST00000425048 NDUFAF5Q5TEU4 345 aa4.09□□□□□ -1.75
LINC01040-201ENST00000425048 LMNTD2Q8IXW0 634 aa4.09□□□□□ -1.75
LINC01040-201ENST00000425048 EMC1Q8N766 993 aa4.09□□□□□ -1.75
LINC01040-201ENST00000425048 PRAC1Q96KF2 57 aa4.09□□□□□ -1.75
LINC01040-201ENST00000425048 SMC6Q96SB8 1091 aa4.09□□□□□ -1.75
LINC01040-201ENST00000425048 RANBP17Q9H2T7 1088 aaKnown RBP4.09□□□□□ -1.75
LINC01040-201ENST00000425048 COQ3Q9NZJ6 369 aa4.09□□□□□ -1.75
LINC01040-201ENST00000425048 IGHV4-4A0A075B6R2 117 aa4.08□□□□□ -1.76
LINC01040-201ENST00000425048 PLK4O00444 970 aa4.08□□□□□ -1.76
LINC01040-201ENST00000425048 CSPG5O95196 566 aa4.08□□□□□ -1.76
LINC01040-201ENST00000425048 NGFP01138 241 aa4.08□□□□□ -1.76
LINC01040-201ENST00000425048 RAF1P04049 648 aa4.08□□□□□ -1.76
LINC01040-201ENST00000425048 GGT5P36269 586 aa4.08□□□□□ -1.76
LINC01040-201ENST00000425048 ARL1P40616 181 aaPredicted RBP4.08□□□□□ -1.76
LINC01040-201ENST00000425048 PIP4K2AP48426 406 aaPredicted RBP4.08□□□□□ -1.76
LINC01040-201ENST00000425048 CTSCP53634 463 aa4.08□□□□□ -1.76
LINC01040-201ENST00000425048 CDC16Q13042 620 aa4.08□□□□□ -1.76
LINC01040-201ENST00000425048 ARHGEF16Q5VV41 709 aa4.08□□□□□ -1.76
LINC01040-201ENST00000425048 KRTAP5-2Q701N4 177 aa4.08□□□□□ -1.76
LINC01040-201ENST00000425048 ISCA2Q86U28 154 aa4.08□□□□□ -1.76
LINC01040-201ENST00000425048 PM20D2Q8IYS1 436 aa4.08□□□□□ -1.76
LINC01040-201ENST00000425048 OR2T12Q8NG77 320 aa4.08□□□□□ -1.76
LINC01040-201ENST00000425048 OR1J2Q8NGS2 313 aa4.08□□□□□ -1.76
LINC01040-201ENST00000425048 GTF3C6Q969F1 213 aa4.08□□□□□ -1.76
LINC01040-201ENST00000425048 TRIM63Q969Q1 353 aa4.08□□□□□ -1.76
LINC01040-201ENST00000425048 MAGIXQ9H6Y5 334 aa4.08□□□□□ -1.76
LINC01040-201ENST00000425048 RABGAP1Q9Y3P9 1069 aa4.08□□□□□ -1.76
LINC01040-201ENST00000425048 PCDHGB3Q9Y5G1 929 aa4.08□□□□□ -1.76
LINC01040-201ENST00000425048 GPR137BO60478 399 aa4.07□□□□□ -1.76
LINC01040-201ENST00000425048 JRKO75564 520 aa4.07□□□□□ -1.76
LINC01040-201ENST00000425048 IL7RP16871 459 aa4.07□□□□□ -1.76
LINC01040-201ENST00000425048 CEACAM8P31997 349 aaPredicted RBP4.07□□□□□ -1.76
LINC01040-201ENST00000425048 ABCD1P33897 745 aa4.07□□□□□ -1.76
LINC01040-201ENST00000425048 NEXNQ0ZGT2 675 aa4.07□□□□□ -1.76
LINC01040-201ENST00000425048 GPR68Q15743 365 aa4.07□□□□□ -1.76
LINC01040-201ENST00000425048 RAB6CQ53S08 254 aa4.07□□□□□ -1.76
LINC01040-201ENST00000425048 NSUN5P2Q63ZY6 315 aa4.07□□□□□ -1.76
LINC01040-201ENST00000425048 RSRC2Q7L4I2 434 aaKnown RBP4.07□□□□□ -1.76
LINC01040-201ENST00000425048 FASTKD5Q7L8L6 764 aaKnown RBP4.07□□□□□ -1.76
LINC01040-201ENST00000425048 PTOV1Q86YD1 416 aa4.07□□□□□ -1.76
LINC01040-201ENST00000425048 ISCA1Q9BUE6 129 aa4.07□□□□□ -1.76
LINC01040-201ENST00000425048 RAB6CQ9H0N0 254 aa4.07□□□□□ -1.76
LINC01040-201ENST00000425048 KLK13Q9UKR3 277 aa4.07□□□□□ -1.76
LINC01040-201ENST00000425048 C1orf226A1L170 272 aa4.06□□□□□ -1.76
LINC01040-201ENST00000425048 TEAD2Q15562 447 aa4.06□□□□□ -1.76
LINC01040-201ENST00000425048 CXorf66Q5JRM2 361 aaPredicted RBP4.06□□□□□ -1.76
LINC01040-201ENST00000425048 PLD3Q8IV08 490 aa4.06□□□□□ -1.76
LINC01040-201ENST00000425048 FBXL16Q8N461 479 aa4.06□□□□□ -1.76
LINC01040-201ENST00000425048 NKAPQ8N5F7 415 aaKnown RBP4.06□□□□□ -1.76
LINC01040-201ENST00000425048 SLC38A9Q8NBW4 561 aa4.06□□□□□ -1.76
LINC01040-201ENST00000425048 HM13Q8TCT9 377 aa4.06□□□□□ -1.76
LINC01040-201ENST00000425048 PSPC1Q8WXF1 523 aaKnown RBP4.06□□□□□ -1.76
LINC01040-201ENST00000425048 PIGQQ9BRB3 760 aa4.06□□□□□ -1.76
LINC01040-201ENST00000425048 TMEM39BQ9GZU3 492 aa4.06□□□□□ -1.76
LINC01040-201ENST00000425048 LAT2Q9GZY6 243 aa4.06□□□□□ -1.76
LINC01040-201ENST00000425048 COPG2Q9UBF2 871 aa4.06□□□□□ -1.76
LINC01040-201ENST00000425048 GJD2Q9UKL4 321 aa4.06□□□□□ -1.76
LINC01040-201ENST00000425048 INTS6Q9UL03 887 aaKnown RBP4.06□□□□□ -1.76
LINC01040-201ENST00000425048 MAU2Q9Y6X3 613 aa4.06□□□□□ -1.76
LINC01040-201ENST00000425048 FRMD6-AS1P0C7T7 363 aa4.05□□□□□ -1.76
LINC01040-201ENST00000425048 PRCPP42785 496 aa4.05□□□□□ -1.76
LINC01040-201ENST00000425048 CTCFP49711 727 aaPredicted RBP4.05□□□□□ -1.76
LINC01040-201ENST00000425048 SP3Q02447 781 aa4.05□□□□□ -1.76
LINC01040-201ENST00000425048 PEX6Q13608 980 aa4.05□□□□□ -1.76
LINC01040-201ENST00000425048 PNLIPRP3Q17RR3 467 aa4.05□□□□□ -1.76
LINC01040-201ENST00000425048 Q6ZSR9 355 aa4.05□□□□□ -1.76
LINC01040-201ENST00000425048 GCSAMQ8N6F7 178 aa4.05□□□□□ -1.76
LINC01040-201ENST00000425048 C1orf52Q8N6N3 182 aaKnown RBP4.05□□□□□ -1.76
LINC01040-201ENST00000425048 LINC00612Q8N6U2 182 aa4.05□□□□□ -1.76
LINC01040-201ENST00000425048 SAAL1Q96ER3 474 aa4.05□□□□□ -1.76
LINC01040-201ENST00000425048 SLC47A1Q96FL8 570 aa4.05□□□□□ -1.76
LINC01040-201ENST00000425048 MAGED4Q96JG8 741 aa4.05□□□□□ -1.76
LINC01040-201ENST00000425048 SARDHQ9UL12 918 aa4.05□□□□□ -1.76
LINC01040-201ENST00000425048 MOB4Q9Y3A3 225 aa4.05□□□□□ -1.76
LINC01040-201ENST00000425048 KANSL1LA0AUZ9 987 aa4.04□□□□□ -1.76
LINC01040-201ENST00000425048 PI15O43692 258 aa4.04□□□□□ -1.76
LINC01040-201ENST00000425048 NKX2-2O95096 273 aa4.04□□□□□ -1.76
LINC01040-201ENST00000425048 KCNK5O95279 499 aa4.04□□□□□ -1.76
LINC01040-201ENST00000425048 MMP15P51511 669 aa4.04□□□□□ -1.76
LINC01040-201ENST00000425048 PPFIA1Q13136 1202 aa4.04□□□□□ -1.76
LINC01040-201ENST00000425048 CDONQ4KMG0 1287 aa4.04□□□□□ -1.76
LINC01040-201ENST00000425048 FASTKD1Q53R41 847 aaKnown RBP4.04□□□□□ -1.76
LINC01040-201ENST00000425048 ZNF805Q5CZA5 627 aa4.04□□□□□ -1.76
LINC01040-201ENST00000425048 C10orf62Q5T681 223 aaPredicted RBP4.04□□□□□ -1.76
LINC01040-201ENST00000425048 SMPDL3BQ92485 455 aa4.04□□□□□ -1.76
LINC01040-201ENST00000425048 MAELQ96JY0 434 aaKnown RBP4.04□□□□□ -1.76
LINC01040-201ENST00000425048 TBX20Q9UMR3 447 aa4.04□□□□□ -1.76
LINC01040-201ENST00000425048 EIF3CLB5ME19 914 aaKnown RBP4.03□□□□□ -1.76
LINC01040-201ENST00000425048 PAFAH1B1P43034 410 aa4.03□□□□□ -1.76
LINC01040-201ENST00000425048 PTGER3P43115 390 aa4.03□□□□□ -1.76
LINC01040-201ENST00000425048 CD81P60033 236 aa4.03□□□□□ -1.76
LINC01040-201ENST00000425048 RAPSNQ13702 412 aa4.03□□□□□ -1.76
LINC01040-201ENST00000425048 RRS1Q15050 365 aaKnown RBP4.03□□□□□ -1.76
LINC01040-201ENST00000425048 BAK1Q16611 211 aa4.03□□□□□ -1.76
LINC01040-201ENST00000425048 GLIPR1L2Q4G1C9 344 aa4.03□□□□□ -1.76
LINC01040-201ENST00000425048 TSSK4Q6SA08 328 aa4.03□□□□□ -1.76
LINC01040-201ENST00000425048 RASGEF1CQ8N431 466 aa4.03□□□□□ -1.76
LINC01040-201ENST00000425048 NGEFQ8N5V2 710 aa4.03□□□□□ -1.76
LINC01040-201ENST00000425048 CLIC4Q9Y696 253 aa4.03□□□□□ -1.76
Retrieved 100 of 20,778 RNA–protein pairs in 31.5 ms