RNA–Protein interactions for RNA: ENST00000417997.1

HMGB3P20-201, Transcript of high mobility group box 3 pseudogene 20, humanhuman

BASIC

Gene HMGB3P20, Length 600 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3P20-201ENST00000417997 TWNKQ96RR1 684 aa3.91□□□□□ -1.78
HMGB3P20-201ENST00000417997 NAP1L3Q99457 506 aaPredicted RBP3.91□□□□□ -1.78
HMGB3P20-201ENST00000417997 RHOXF2Q9BQY4 288 aa3.91□□□□□ -1.78
HMGB3P20-201ENST00000417997 MRPL45Q9BRJ2 306 aaKnown RBP3.91□□□□□ -1.78
HMGB3P20-201ENST00000417997 MED10Q9BTT4 135 aa3.91□□□□□ -1.78
HMGB3P20-201ENST00000417997 SCNM1Q9BWG6 230 aa3.91□□□□□ -1.78
HMGB3P20-201ENST00000417997 FTHL17Q9BXU8 183 aa3.91□□□□□ -1.78
HMGB3P20-201ENST00000417997 EBF3Q9H4W6 596 aa3.91□□□□□ -1.78
HMGB3P20-201ENST00000417997 PNPLA8Q9NP80 782 aa3.91□□□□□ -1.78
HMGB3P20-201ENST00000417997 HEYLQ9NQ87 328 aaPredicted RBP3.91□□□□□ -1.78
HMGB3P20-201ENST00000417997 FAM49BQ9NUQ9 324 aa3.91□□□□□ -1.78
HMGB3P20-201ENST00000417997 POT1Q9NUX5 634 aa3.91□□□□□ -1.78
HMGB3P20-201ENST00000417997 PARVAQ9NVD7 372 aa3.91□□□□□ -1.78
HMGB3P20-201ENST00000417997 DDX43Q9NXZ2 648 aaKnown RBP3.91□□□□□ -1.78
HMGB3P20-201ENST00000417997 OBP2AQ9NY56 170 aa3.91□□□□□ -1.78
HMGB3P20-201ENST00000417997 EHD2Q9NZN4 543 aa3.91□□□□□ -1.78
HMGB3P20-201ENST00000417997 WDR35Q9P2L0 1181 aa3.91□□□□□ -1.78
HMGB3P20-201ENST00000417997 TSPAN16Q9UKR8 245 aa3.91□□□□□ -1.78
HMGB3P20-201ENST00000417997 KIAA1257Q9ULG3 409 aa3.91□□□□□ -1.78
HMGB3P20-201ENST00000417997 VPS4AQ9UN37 437 aa3.91□□□□□ -1.78
HMGB3P20-201ENST00000417997 COG5Q9UP83 839 aa3.91□□□□□ -1.78
HMGB3P20-201ENST00000417997 HEMK1Q9Y5R4 338 aaPredicted RBP3.91□□□□□ -1.78
HMGB3P20-201ENST00000417997 PTPRDP23468 1912 aa3.91□□□□□ -1.78
HMGB3P20-201ENST00000417997 A0A0U1RQF3 1178 aa3.9□□□□□ -1.79
HMGB3P20-201ENST00000417997 CCDC188H7C350 402 aa3.9□□□□□ -1.79
HMGB3P20-201ENST00000417997 O00370 1275 aa3.9□□□□□ -1.79
HMGB3P20-201ENST00000417997 PSTPIP1O43586 416 aa3.9□□□□□ -1.79
HMGB3P20-201ENST00000417997 PROSCO94903 275 aa3.9□□□□□ -1.79
HMGB3P20-201ENST00000417997 WDR47O94967 919 aa3.9□□□□□ -1.79
HMGB3P20-201ENST00000417997 PARNO95453 639 aaKnown RBP3.9□□□□□ -1.79
HMGB3P20-201ENST00000417997 TFRCP02786 760 aaKnown RBP3.9□□□□□ -1.79
HMGB3P20-201ENST00000417997 ANXA2P07355 339 aaKnown RBP3.9□□□□□ -1.79
HMGB3P20-201ENST00000417997 CD63P08962 238 aa3.9□□□□□ -1.79
HMGB3P20-201ENST00000417997 TMIGD3P0DMS9 266 aaPredicted RBP3.9□□□□□ -1.79
HMGB3P20-201ENST00000417997 CTSAP10619 480 aa3.9□□□□□ -1.79
HMGB3P20-201ENST00000417997 CCDC130P13994 396 aa3.9□□□□□ -1.79
HMGB3P20-201ENST00000417997 MMP8P22894 467 aa3.9□□□□□ -1.79
HMGB3P20-201ENST00000417997 WARSP23381 471 aaKnown RBP3.9□□□□□ -1.79
HMGB3P20-201ENST00000417997 PAX3P23760 479 aa3.9□□□□□ -1.79
HMGB3P20-201ENST00000417997 PSMA2P25787 234 aa3.9□□□□□ -1.79
HMGB3P20-201ENST00000417997 CTNNA2P26232 953 aa3.9□□□□□ -1.79
HMGB3P20-201ENST00000417997 RPL9P32969 192 aaKnown RBP3.9□□□□□ -1.79
HMGB3P20-201ENST00000417997 MAN1A1P33908 653 aa3.9□□□□□ -1.79
HMGB3P20-201ENST00000417997 CTNNA1P35221 906 aaKnown RBP3.9□□□□□ -1.79
HMGB3P20-201ENST00000417997 GNL1P36915 607 aaPredicted RBP3.9□□□□□ -1.79
HMGB3P20-201ENST00000417997 SLC1A1P43005 524 aa3.9□□□□□ -1.79
HMGB3P20-201ENST00000417997 RGS7P49802 495 aa3.9□□□□□ -1.79
HMGB3P20-201ENST00000417997 CLCNKBP51801 687 aa3.9□□□□□ -1.79
HMGB3P20-201ENST00000417997 COPAP53621 1224 aa3.9□□□□□ -1.79
HMGB3P20-201ENST00000417997 FOXG1P55316 489 aaPredicted RBP3.9□□□□□ -1.79
HMGB3P20-201ENST00000417997 RWDD2BP57060 319 aa3.9□□□□□ -1.79
HMGB3P20-201ENST00000417997 WDR5P61964 334 aaKnown RBP3.9□□□□□ -1.79
HMGB3P20-201ENST00000417997 CFHR1Q03591 330 aa3.9□□□□□ -1.79
HMGB3P20-201ENST00000417997 BST2Q10589 180 aaKnown RBP3.9□□□□□ -1.79
HMGB3P20-201ENST00000417997 PDCLQ13371 301 aa3.9□□□□□ -1.79
HMGB3P20-201ENST00000417997 SEMA5AQ13591 1074 aa3.9□□□□□ -1.79
HMGB3P20-201ENST00000417997 CLCA4Q14CN2 919 aa3.9□□□□□ -1.79
HMGB3P20-201ENST00000417997 HADHQ16836 314 aaKnown RBP3.9□□□□□ -1.79
HMGB3P20-201ENST00000417997 TRIM60Q495X7 471 aa3.9□□□□□ -1.79
HMGB3P20-201ENST00000417997 MAP9Q49MG5 647 aa3.9□□□□□ -1.79
HMGB3P20-201ENST00000417997 PTPN20Q4JDL3 420 aa3.9□□□□□ -1.79
HMGB3P20-201ENST00000417997 OR6B2Q6IFH4 312 aa3.9□□□□□ -1.79
HMGB3P20-201ENST00000417997 PLEKHA7Q6IQ23 1121 aa3.9□□□□□ -1.79
HMGB3P20-201ENST00000417997 GRHL2Q6ISB3 625 aa3.9□□□□□ -1.79
HMGB3P20-201ENST00000417997 TMCO3Q6UWJ1 677 aa3.9□□□□□ -1.79
HMGB3P20-201ENST00000417997 LCLAT1Q6UWP7 414 aa3.9□□□□□ -1.79
HMGB3P20-201ENST00000417997 ALKAL1Q6UXT8 129 aa3.9□□□□□ -1.79
HMGB3P20-201ENST00000417997 SLC24A5Q71RS6 500 aa3.9□□□□□ -1.79
HMGB3P20-201ENST00000417997 RSRC2Q7L4I2 434 aaKnown RBP3.9□□□□□ -1.79
HMGB3P20-201ENST00000417997 MTERF4Q7Z6M4 381 aaKnown RBP3.9□□□□□ -1.79
HMGB3P20-201ENST00000417997 SLFN11Q7Z7L1 901 aa3.9□□□□□ -1.79
HMGB3P20-201ENST00000417997 TMEM86AQ8N2M4 240 aa3.9□□□□□ -1.79
HMGB3P20-201ENST00000417997 PDCL2Q8N4E4 241 aa3.9□□□□□ -1.79
HMGB3P20-201ENST00000417997 ZNF548Q8NEK5 533 aaPredicted RBP3.9□□□□□ -1.79
HMGB3P20-201ENST00000417997 TTC8Q8TAM2 541 aa3.9□□□□□ -1.79
HMGB3P20-201ENST00000417997 UBA3Q8TBC4 463 aa3.9□□□□□ -1.79
HMGB3P20-201ENST00000417997 MAIP1Q8WWC4 291 aa3.9□□□□□ -1.79
HMGB3P20-201ENST00000417997 C18orf8Q96DM3 657 aa3.9□□□□□ -1.79
HMGB3P20-201ENST00000417997 LRRC46Q96FV0 321 aa3.9□□□□□ -1.79
HMGB3P20-201ENST00000417997 HES6Q96HZ4 224 aa3.9□□□□□ -1.79
HMGB3P20-201ENST00000417997 MSLNLQ96KJ4 702 aa3.9□□□□□ -1.79
HMGB3P20-201ENST00000417997 SYT15Q9BQS2 421 aa3.9□□□□□ -1.79
HMGB3P20-201ENST00000417997 MRPL9Q9BYD2 267 aaKnown RBP3.9□□□□□ -1.79
HMGB3P20-201ENST00000417997 NUAK2Q9H093 628 aa3.9□□□□□ -1.79
HMGB3P20-201ENST00000417997 CARD9Q9H257 536 aa3.9□□□□□ -1.79
HMGB3P20-201ENST00000417997 CXCL16Q9H2A7 254 aa3.9□□□□□ -1.79
HMGB3P20-201ENST00000417997 LHX5Q9H2C1 402 aa3.9□□□□□ -1.79
HMGB3P20-201ENST00000417997 HIPK3Q9H422 1215 aa3.9□□□□□ -1.79
HMGB3P20-201ENST00000417997 DPEP3Q9H4B8 488 aa3.9□□□□□ -1.79
HMGB3P20-201ENST00000417997 SAP30LQ9HAJ7 183 aa3.9□□□□□ -1.79
HMGB3P20-201ENST00000417997 VPS45Q9NRW7 570 aa3.9□□□□□ -1.79
HMGB3P20-201ENST00000417997 RGS18Q9NS28 235 aa3.9□□□□□ -1.79
HMGB3P20-201ENST00000417997 TMEM161AQ9NX61 479 aa3.9□□□□□ -1.79
HMGB3P20-201ENST00000417997 GDAP2Q9NXN4 497 aa3.9□□□□□ -1.79
HMGB3P20-201ENST00000417997 GAR1Q9NY12 217 aaKnown RBP3.9□□□□□ -1.79
HMGB3P20-201ENST00000417997 SMARCAL1Q9NZC9 954 aa3.9□□□□□ -1.79
HMGB3P20-201ENST00000417997 CACNG4Q9UBN1 327 aa3.9□□□□□ -1.79
HMGB3P20-201ENST00000417997 HEY2Q9UBP5 337 aa3.9□□□□□ -1.79
HMGB3P20-201ENST00000417997 CHORDC1Q9UHD1 332 aaPredicted RBP3.9□□□□□ -1.79
HMGB3P20-201ENST00000417997 VPS51Q9UID3 782 aa3.9□□□□□ -1.79
Retrieved 100 of 20,778 RNA–protein pairs in 113.9 ms