RNA–Protein interactions for RNA: ENST00000415083.6

SS18-203, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene SS18, Length 3,414 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-203ENST00000415083 GPIP06744 558 aa9.75□□□□□ -0.85
SS18-203ENST00000415083 G6PDP11413 515 aa9.75□□□□□ -0.85
SS18-203ENST00000415083 PIGFQ07326 219 aa9.75□□□□□ -0.85
SS18-203ENST00000415083 TAF10Q12962 218 aa9.75□□□□□ -0.85
SS18-203ENST00000415083 C5orf22Q49AR2 442 aa9.75□□□□□ -0.85
SS18-203ENST00000415083 RFTN2Q52LD8 501 aaPredicted RBP9.75□□□□□ -0.85
SS18-203ENST00000415083 PDCD4Q53EL6 469 aaKnown RBP9.75□□□□□ -0.85
SS18-203ENST00000415083 GTF2IRD2BQ6EKJ0 949 aa9.75□□□□□ -0.85
SS18-203ENST00000415083 LAIR1Q6GTX8 287 aa9.75□□□□□ -0.85
SS18-203ENST00000415083 PRMT9Q6P2P2 845 aa9.75□□□□□ -0.85
SS18-203ENST00000415083 ENPP6Q6UWR7 440 aa9.75□□□□□ -0.85
SS18-203ENST00000415083 GTF2IRD2Q86UP8 949 aa9.75□□□□□ -0.85
SS18-203ENST00000415083 LRRC43Q8N309 656 aa9.75□□□□□ -0.85
SS18-203ENST00000415083 LKAAEAR1Q8TD35 194 aa9.75□□□□□ -0.85
SS18-203ENST00000415083 TRIB2Q92519 343 aa9.75□□□□□ -0.85
SS18-203ENST00000415083 TBRG4Q969Z0 631 aaKnown RBP eCLIP9.75□□□□□ -0.85
SS18-203ENST00000415083 ACDQ96AP0 544 aa9.75□□□□□ -0.85
SS18-203ENST00000415083 KCTD14Q9BQ13 255 aaPredicted RBP9.75□□□□□ -0.85
SS18-203ENST00000415083 C9orf16Q9BUW7 83 aa9.75□□□□□ -0.85
SS18-203ENST00000415083 POLR1EQ9GZS1 481 aaKnown RBP9.75□□□□□ -0.85
SS18-203ENST00000415083 BPIFA1Q9NP55 256 aa9.75□□□□□ -0.85
SS18-203ENST00000415083 PAK1IP1Q9NWT1 392 aaPredicted RBP9.75□□□□□ -0.85
SS18-203ENST00000415083 FKBPLQ9UIM3 349 aa9.75□□□□□ -0.85
SS18-203ENST00000415083 UBA6A0AVT1 1052 aaPredicted RBP9.75□□□□□ -0.85
SS18-203ENST00000415083 SH3PXD2BA1X283 911 aa9.75□□□□□ -0.85
SS18-203ENST00000415083 ZNF701M0R085 212 aaPredicted RBP9.75□□□□□ -0.85
SS18-203ENST00000415083 BTN3A1O00481 513 aa9.75□□□□□ -0.85
SS18-203ENST00000415083 GAPDHSO14556 408 aaPredicted RBP9.75□□□□□ -0.85
SS18-203ENST00000415083 CLOCKO15516 846 aa9.75□□□□□ -0.85
SS18-203ENST00000415083 RHOBTB1O94844 696 aa9.75□□□□□ -0.85
SS18-203ENST00000415083 EPOP01588 193 aa9.75□□□□□ -0.85
SS18-203ENST00000415083 ALPLP05186 524 aa9.75□□□□□ -0.85
SS18-203ENST00000415083 HSPA8P11142 646 aaKnown RBP9.75□□□□□ -0.85
SS18-203ENST00000415083 HLA-DPA1P20036 260 aa9.75□□□□□ -0.85
SS18-203ENST00000415083 HTR1EP28566 365 aa9.75□□□□□ -0.85
SS18-203ENST00000415083 CLCN7P51798 805 aa9.75□□□□□ -0.85
SS18-203ENST00000415083 BNIP3Q12983 259 aa9.75□□□□□ -0.85
SS18-203ENST00000415083 MRPL58Q14197 206 aaKnown RBP9.75□□□□□ -0.85
SS18-203ENST00000415083 MAPRE1Q15691 268 aaKnown RBP9.75□□□□□ -0.85
SS18-203ENST00000415083 TMTC4Q5T4D3 741 aa9.75□□□□□ -0.85
SS18-203ENST00000415083 BTLAQ7Z6A9 289 aa9.75□□□□□ -0.85
SS18-203ENST00000415083 THEM5Q8N1Q8 247 aa9.75□□□□□ -0.85
SS18-203ENST00000415083 CDYL2Q8N8U2 506 aa9.75□□□□□ -0.85
SS18-203ENST00000415083 STAG3L4Q8TBR4 150 aa9.75□□□□□ -0.85
SS18-203ENST00000415083 SNX19Q92543 992 aa9.75□□□□□ -0.85
SS18-203ENST00000415083 PEX13Q92968 403 aa9.75□□□□□ -0.85
SS18-203ENST00000415083 VOPP1Q96AW1 172 aa9.75□□□□□ -0.85
SS18-203ENST00000415083 FKBP10Q96AY3 582 aa9.75□□□□□ -0.85
SS18-203ENST00000415083 PPM1MQ96MI6 270 aa9.75□□□□□ -0.85
SS18-203ENST00000415083 RPRD1AQ96P16 312 aaPredicted RBP9.75□□□□□ -0.85
SS18-203ENST00000415083 TRIM62Q9BVG3 475 aa9.75□□□□□ -0.85
SS18-203ENST00000415083 POLR1BQ9H9Y6 1135 aa9.75□□□□□ -0.85
SS18-203ENST00000415083 SLC25A37Q9NYZ2 338 aa9.75□□□□□ -0.85
SS18-203ENST00000415083 VAPAQ9P0L0 249 aa9.75□□□□□ -0.85
SS18-203ENST00000415083 IFT80Q9P2H3 777 aaPredicted RBP9.75□□□□□ -0.85
SS18-203ENST00000415083 THSD7BQ9C0I4 1608 aa9.75□□□□□ -0.85
SS18-203ENST00000415083 TAPBPO15533 448 aa9.75□□□□□ -0.85
SS18-203ENST00000415083 MLYCDO95822 493 aa9.75□□□□□ -0.85
SS18-203ENST00000415083 KLKB1P03952 638 aa9.75□□□□□ -0.85
SS18-203ENST00000415083 ZDHHC11BP0C7U3 371 aa9.75□□□□□ -0.85
SS18-203ENST00000415083 PCNAP12004 261 aa9.75□□□□□ -0.85
SS18-203ENST00000415083 PPP1R8Q12972 351 aaKnown RBP9.75□□□□□ -0.85
SS18-203ENST00000415083 AQP6Q13520 282 aa9.75□□□□□ -0.85
SS18-203ENST00000415083 LAPTM5Q13571 262 aa9.75□□□□□ -0.85
SS18-203ENST00000415083 CRY1Q16526 586 aa9.75□□□□□ -0.85
SS18-203ENST00000415083 PTPRNQ16849 979 aa9.75□□□□□ -0.85
SS18-203ENST00000415083 PARP15Q460N3 678 aa9.75□□□□□ -0.85
SS18-203ENST00000415083 VARS2Q5ST30 1063 aaKnown RBP9.75□□□□□ -0.85
SS18-203ENST00000415083 ZNF551Q7Z340 670 aaPredicted RBP9.75□□□□□ -0.85
SS18-203ENST00000415083 SPATA19Q7Z5L4 167 aa9.75□□□□□ -0.85
SS18-203ENST00000415083 ZC3H7AQ8IWR0 971 aaKnown RBP9.75□□□□□ -0.85
SS18-203ENST00000415083 DPP10Q8N608 796 aa9.75□□□□□ -0.85
SS18-203ENST00000415083 EFHD1Q9BUP0 239 aa9.75□□□□□ -0.85
SS18-203ENST00000415083 GPR62Q9BZJ7 368 aa9.75□□□□□ -0.85
SS18-203ENST00000415083 FARSBQ9NSD9 589 aaKnown RBP9.75□□□□□ -0.85
SS18-203ENST00000415083 MRGBPQ9NV56 204 aa9.75□□□□□ -0.85
SS18-203ENST00000415083 INTS10Q9NVR2 710 aaKnown RBP9.75□□□□□ -0.85
SS18-203ENST00000415083 MARCH2Q9P0N8 246 aa9.75□□□□□ -0.85
SS18-203ENST00000415083 RIMKLBQ9ULI2 386 aa9.75□□□□□ -0.85
SS18-203ENST00000415083 FAF1Q9UNN5 650 aaPredicted RBP9.75□□□□□ -0.85
SS18-203ENST00000415083 PCDHGC4Q9Y5F7 938 aa9.75□□□□□ -0.85
SS18-203ENST00000415083 RNF103-CHMP3A0A140T963 221 aa9.74□□□□□ -0.85
SS18-203ENST00000415083 SLC12A8A0AV02 714 aa9.74□□□□□ -0.85
SS18-203ENST00000415083 BOLA2-SMG1P6H3BVE0 249 aa9.74□□□□□ -0.85
SS18-203ENST00000415083 STX16O14662 325 aa9.74□□□□□ -0.85
SS18-203ENST00000415083 DFNA5O60443 496 aa9.74□□□□□ -0.85
SS18-203ENST00000415083 ATP6V1G1O75348 118 aa9.74□□□□□ -0.85
SS18-203ENST00000415083 NDST3O95803 873 aa9.74□□□□□ -0.85
SS18-203ENST00000415083 UROSP10746 265 aa9.74□□□□□ -0.85
SS18-203ENST00000415083 ZNF182P17025 639 aaPredicted RBP9.74□□□□□ -0.85
SS18-203ENST00000415083 TACR2P21452 398 aa9.74□□□□□ -0.85
SS18-203ENST00000415083 RPS24P62847 133 aaKnown RBP9.74□□□□□ -0.85
SS18-203ENST00000415083 ERVK-8P63133 956 aa9.74□□□□□ -0.85
SS18-203ENST00000415083 PLIN5Q00G26 463 aa9.74□□□□□ -0.85
SS18-203ENST00000415083 BTG3Q14201 252 aaPredicted RBP9.74□□□□□ -0.85
SS18-203ENST00000415083 INPP5AQ14642 412 aa9.74□□□□□ -0.85
SS18-203ENST00000415083 ABRAXAS2Q15018 415 aa9.74□□□□□ -0.85
SS18-203ENST00000415083 GEN1Q17RS7 908 aa9.74□□□□□ -0.85
SS18-203ENST00000415083 MRNIPQ6NTE8 343 aa9.74□□□□□ -0.85
SS18-203ENST00000415083 SBSNQ6UWP8 590 aa9.74□□□□□ -0.85
Retrieved 100 of 20,778 RNA–protein pairs in 20.7 ms