RNA–Protein interactions for RNA: ENST00000413716.6

CCDC88A-204, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 1 (best) BASIC

Gene CCDC88A, Length 9,586 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-204ENST00000413716 SEMA3AQ14563 771 aa13.23□□□□□ -0.29
CCDC88A-204ENST00000413716 CADM2Q8N3J6 435 aa13.23□□□□□ -0.29
CCDC88A-204ENST00000413716 WDSUB1Q8N9V3 476 aa13.23□□□□□ -0.29
CCDC88A-204ENST00000413716 TOR1AIP2Q8NFQ8 470 aa13.23□□□□□ -0.29
CCDC88A-204ENST00000413716 OR6K6Q8NGW6 343 aa13.23□□□□□ -0.29
CCDC88A-204ENST00000413716 AARSD1Q9BTE6 412 aaKnown RBP13.23□□□□□ -0.29
CCDC88A-204ENST00000413716 E9PAM4 449 aa13.22□□□□□ -0.29
CCDC88A-204ENST00000413716 NME6O75414 186 aaPredicted RBP13.22□□□□□ -0.29
CCDC88A-204ENST00000413716 KCNA6P17658 529 aa13.22□□□□□ -0.29
CCDC88A-204ENST00000413716 PAX3P23760 479 aa13.22□□□□□ -0.29
CCDC88A-204ENST00000413716 SLC20A2Q08357 652 aa13.22□□□□□ -0.29
CCDC88A-204ENST00000413716 SMARCB1Q12824 385 aa13.22□□□□□ -0.29
CCDC88A-204ENST00000413716 BAATQ14032 418 aaPredicted RBP13.22□□□□□ -0.29
CCDC88A-204ENST00000413716 DCST2Q5T1A1 773 aa13.22□□□□□ -0.29
CCDC88A-204ENST00000413716 LRRN1Q6UXK5 716 aa13.22□□□□□ -0.29
CCDC88A-204ENST00000413716 SLC30A8Q8IWU4 369 aa13.22□□□□□ -0.29
CCDC88A-204ENST00000413716 VCPIP1Q96JH7 1222 aa13.22□□□□□ -0.29
CCDC88A-204ENST00000413716 UNKLQ9H9P5 680 aaKnown RBP13.22□□□□□ -0.29
CCDC88A-204ENST00000413716 L2HGDHQ9H9P8 463 aa13.22□□□□□ -0.29
CCDC88A-204ENST00000413716 SGK2Q9HBY8 427 aa13.22□□□□□ -0.29
CCDC88A-204ENST00000413716 KCNH7Q9NS40 1196 aa13.22□□□□□ -0.29
CCDC88A-204ENST00000413716 PTTG2Q9NZH5 202 aa13.22□□□□□ -0.29
CCDC88A-204ENST00000413716 BTRCQ9Y297 605 aa13.22□□□□□ -0.29
CCDC88A-204ENST00000413716 CEP152O94986 1710 aa13.22□□□□□ -0.29
CCDC88A-204ENST00000413716 ANKRD33BA6NCL7 494 aa13.22□□□□□ -0.29
CCDC88A-204ENST00000413716 DNAJA1P31689 397 aaKnown RBP13.22□□□□□ -0.29
CCDC88A-204ENST00000413716 PLEKHN1Q494U1 663 aaPredicted RBP13.22□□□□□ -0.29
CCDC88A-204ENST00000413716 ADCY4Q8NFM4 1077 aa13.22□□□□□ -0.29
CCDC88A-204ENST00000413716 ZDHHC15Q96MV8 337 aa13.22□□□□□ -0.29
CCDC88A-204ENST00000413716 TAPBPLQ9BX59 468 aa13.22□□□□□ -0.29
CCDC88A-204ENST00000413716 MALT1Q9UDY8 824 aa13.22□□□□□ -0.29
CCDC88A-204ENST00000413716 SNCAIPQ9Y6H5 919 aa13.22□□□□□ -0.29
CCDC88A-204ENST00000413716 M0R233 179 aa13.22□□□□□ -0.29
CCDC88A-204ENST00000413716 CLCN7P51798 805 aa13.22□□□□□ -0.29
CCDC88A-204ENST00000413716 ZNF484Q5JVG2 852 aa13.22□□□□□ -0.29
CCDC88A-204ENST00000413716 ADAMTS15Q8TE58 950 aa13.22□□□□□ -0.29
CCDC88A-204ENST00000413716 PGM2Q96G03 612 aa13.22□□□□□ -0.29
CCDC88A-204ENST00000413716 RANBP3Q9H6Z4 567 aaPredicted RBP13.22□□□□□ -0.29
CCDC88A-204ENST00000413716 COMMD3Q9UBI1 195 aa13.22□□□□□ -0.29
CCDC88A-204ENST00000413716 POLR2JP52435 117 aaKnown RBP13.22□□□□□ -0.29
CCDC88A-204ENST00000413716 FBXO47Q5MNV8 452 aa13.22□□□□□ -0.29
CCDC88A-204ENST00000413716 CCNYL2Q5T2Q4 361 aa13.22□□□□□ -0.29
CCDC88A-204ENST00000413716 GALNT11Q8NCW6 608 aa13.22□□□□□ -0.29
CCDC88A-204ENST00000413716 DCAKDQ8WVC6 231 aa13.22□□□□□ -0.29
CCDC88A-204ENST00000413716 UPF1Q92900 1129 aaKnown RBP eCLIP13.22□□□□□ -0.29
CCDC88A-204ENST00000413716 CAPN6Q9Y6Q1 641 aa13.22□□□□□ -0.29
CCDC88A-204ENST00000413716 ADAMTS3O15072 1205 aa13.22□□□□□ -0.29
CCDC88A-204ENST00000413716 AQP1P29972 269 aa13.22□□□□□ -0.29
CCDC88A-204ENST00000413716 GBX2P52951 348 aaPredicted RBP13.22□□□□□ -0.29
CCDC88A-204ENST00000413716 ZNF543Q08ER8 600 aa13.22□□□□□ -0.29
CCDC88A-204ENST00000413716 MAD2L1BPQ15013 274 aaPredicted RBP13.22□□□□□ -0.29
CCDC88A-204ENST00000413716 PHYKPLQ8IUZ5 450 aa13.22□□□□□ -0.29
CCDC88A-204ENST00000413716 OVCA2Q8WZ82 227 aa13.22□□□□□ -0.29
CCDC88A-204ENST00000413716 FERD3LQ96RJ6 166 aa13.22□□□□□ -0.29
CCDC88A-204ENST00000413716 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP13.22□□□□□ -0.296e-11■■■■■ 36.3
CCDC88A-204ENST00000413716 C8orf48Q96LL4 319 aa13.22□□□□□ -0.29
CCDC88A-204ENST00000413716 GLT1D1Q96MS3 346 aa13.22□□□□□ -0.29
CCDC88A-204ENST00000413716 KCTD15Q96SI1 283 aaPredicted RBP13.22□□□□□ -0.29
CCDC88A-204ENST00000413716 SULT4A1Q9BR01 284 aa13.22□□□□□ -0.29
CCDC88A-204ENST00000413716 POLR1CO15160 346 aaPredicted RBP13.22□□□□□ -0.29
CCDC88A-204ENST00000413716 SULT1B1O43704 296 aa13.22□□□□□ -0.29
CCDC88A-204ENST00000413716 PRAMEF12O95522 483 aa13.22□□□□□ -0.29
CCDC88A-204ENST00000413716 KLRC2P26717 231 aa13.22□□□□□ -0.29
CCDC88A-204ENST00000413716 PRDX5P30044 214 aa13.22□□□□□ -0.29
CCDC88A-204ENST00000413716 YAP1P46937 504 aaKnown RBP13.22□□□□□ -0.29
CCDC88A-204ENST00000413716 NKX6-1P78426 367 aaPredicted RBP13.22□□□□□ -0.29
CCDC88A-204ENST00000413716 CEP97Q8IW35 865 aa13.22□□□□□ -0.29
CCDC88A-204ENST00000413716 ELP3Q9H9T3 547 aa13.22□□□□□ -0.29
CCDC88A-204ENST00000413716 TMLHEQ9NVH6 421 aa13.22□□□□□ -0.29
CCDC88A-204ENST00000413716 C14orf105Q9NVL8 296 aa13.22□□□□□ -0.29
CCDC88A-204ENST00000413716 ERVK-11Q9UQG0 969 aa13.22□□□□□ -0.29
CCDC88A-204ENST00000413716 WASF2Q9Y6W5 498 aa13.22□□□□□ -0.29
CCDC88A-204ENST00000413716 CAPZA1P52907 286 aa13.21□□□□□ -0.29
CCDC88A-204ENST00000413716 TBC1D15Q8TC07 691 aa13.21□□□□□ -0.29
CCDC88A-204ENST00000413716 UBXN7O94888 489 aa13.21□□□□□ -0.29
CCDC88A-204ENST00000413716 CCR10P46092 362 aa13.21□□□□□ -0.29
CCDC88A-204ENST00000413716 SLC5A3P53794 718 aa13.21□□□□□ -0.29
CCDC88A-204ENST00000413716 DLG2Q15700 870 aa13.21□□□□□ -0.29
CCDC88A-204ENST00000413716 GPR89AB7ZAQ6 455 aa13.21□□□□□ -0.29
CCDC88A-204ENST00000413716 MICAL2O94851 1124 aa13.21□□□□□ -0.29
CCDC88A-204ENST00000413716 GPR89BP0CG08 455 aa13.21□□□□□ -0.29
CCDC88A-204ENST00000413716 C9orf64Q5T6V5 341 aa13.21□□□□□ -0.29
CCDC88A-204ENST00000413716 TMED4Q7Z7H5 227 aa13.21□□□□□ -0.29
CCDC88A-204ENST00000413716 PBDC1Q9BVG4 233 aa13.21□□□□□ -0.29
CCDC88A-204ENST00000413716 STRA6Q9BX79 667 aa13.21□□□□□ -0.29
CCDC88A-204ENST00000413716 PDE10AQ9Y233 779 aa13.21□□□□□ -0.29
CCDC88A-204ENST00000413716 SLC9A3R1O14745 358 aaPredicted RBP13.21□□□□□ -0.29
CCDC88A-204ENST00000413716 PDK4Q16654 411 aa13.21□□□□□ -0.29
CCDC88A-204ENST00000413716 OR52J3Q8NH60 311 aa13.21□□□□□ -0.29
CCDC88A-204ENST00000413716 HCAR2Q8TDS4 363 aa13.21□□□□□ -0.29
CCDC88A-204ENST00000413716 TCTEX1D2Q8WW35 142 aa13.21□□□□□ -0.29
CCDC88A-204ENST00000413716 TNFRSF25Q93038 417 aa13.21□□□□□ -0.29
CCDC88A-204ENST00000413716 CERS2Q96G23 380 aa13.21□□□□□ -0.29
CCDC88A-204ENST00000413716 NPAS2Q99743 824 aa13.21□□□□□ -0.29
CCDC88A-204ENST00000413716 ELOVL4Q9GZR5 314 aa13.21□□□□□ -0.29
CCDC88A-204ENST00000413716 OSGEPQ9NPF4 335 aa13.21□□□□□ -0.29
CCDC88A-204ENST00000413716 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP13.21□□□□□ -0.293e-7■■■■□ 23.2
CCDC88A-204ENST00000413716 AZIN1O14977 448 aa13.21□□□□□ -0.29
CCDC88A-204ENST00000413716 CTHP32929 405 aa13.21□□□□□ -0.29
CCDC88A-204ENST00000413716 SSR2P43308 183 aa13.21□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 18.5 ms