RNA–Protein interactions for RNA: ENST00000409558.8

VPS54-203, Transcript of VPS54, GARP complex subunit, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene VPS54, Length 4,337 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54-203ENST00000409558 B4GAT1O43505 415 aa13.23□□□□□ -0.29
VPS54-203ENST00000409558 CLDN11O75508 207 aa13.23□□□□□ -0.29
VPS54-203ENST00000409558 IL10P22301 178 aa13.23□□□□□ -0.29
VPS54-203ENST00000409558 PSMA4P25789 261 aaKnown RBP13.23□□□□□ -0.29
VPS54-203ENST00000409558 AKT1P31749 480 aa13.23□□□□□ -0.29
VPS54-203ENST00000409558 GSSP48637 474 aa13.23□□□□□ -0.29
VPS54-203ENST00000409558 MAPKAPK2P49137 400 aa13.23□□□□□ -0.29
VPS54-203ENST00000409558 PRKCQQ04759 706 aa13.23□□□□□ -0.29
VPS54-203ENST00000409558 SELPLGQ14242 412 aa13.23□□□□□ -0.29
VPS54-203ENST00000409558 NEDD8Q15843 81 aa13.23□□□□□ -0.29
VPS54-203ENST00000409558 GTDC1Q4AE62 458 aa13.23□□□□□ -0.29
VPS54-203ENST00000409558 ZFP1Q6P2D0 407 aa13.23□□□□□ -0.29
VPS54-203ENST00000409558 OTOP2Q7RTS6 562 aa13.23□□□□□ -0.29
VPS54-203ENST00000409558 HS3ST5Q8IZT8 346 aa13.23□□□□□ -0.29
VPS54-203ENST00000409558 TMEM102Q8N9M5 508 aaPredicted RBP13.23□□□□□ -0.29
VPS54-203ENST00000409558 OR4F6Q8NGB9 312 aa13.23□□□□□ -0.29
VPS54-203ENST00000409558 SORCS1Q8WY21 1168 aa13.23□□□□□ -0.29
VPS54-203ENST00000409558 ZDHHC6Q9H6R6 413 aa13.23□□□□□ -0.29
VPS54-203ENST00000409558 IGLV3-10A0A075B6K4 115 aa13.23□□□□□ -0.29
VPS54-203ENST00000409558 ARPC2O15144 300 aa13.23□□□□□ -0.29
VPS54-203ENST00000409558 KERAO60938 352 aa13.23□□□□□ -0.29
VPS54-203ENST00000409558 SLC22A3O75751 556 aa13.23□□□□□ -0.29
VPS54-203ENST00000409558 TFAP2AP05549 437 aa13.23□□□□□ -0.29
VPS54-203ENST00000409558 PBLDP30039 288 aaPredicted RBP13.23□□□□□ -0.29
VPS54-203ENST00000409558 GSK3BP49841 420 aa13.23□□□□□ -0.29
VPS54-203ENST00000409558 RFTN2Q52LD8 501 aaPredicted RBP13.23□□□□□ -0.29
VPS54-203ENST00000409558 TTC33Q6PID6 262 aaPredicted RBP13.23□□□□□ -0.29
VPS54-203ENST00000409558 TEX26Q8N6G2 289 aa13.23□□□□□ -0.29
VPS54-203ENST00000409558 KRTCAP2Q8N6L1 136 aa13.23□□□□□ -0.29
VPS54-203ENST00000409558 KIAA1191Q96A73 305 aa13.23□□□□□ -0.29
VPS54-203ENST00000409558 ALG2Q9H553 416 aa13.23□□□□□ -0.29
VPS54-203ENST00000409558 CFAP97Q9P2B7 532 aa13.23□□□□□ -0.29
VPS54-203ENST00000409558 TSC2P49815 1807 aa13.23□□□□□ -0.29
VPS54-203ENST00000409558 H7C4K7 107 aa13.23□□□□□ -0.29
VPS54-203ENST00000409558 GNGT2O14610 69 aa13.23□□□□□ -0.29
VPS54-203ENST00000409558 GSTA4O15217 222 aa13.23□□□□□ -0.29
VPS54-203ENST00000409558 MAN1A2O60476 641 aa13.23□□□□□ -0.29
VPS54-203ENST00000409558 ITPKAP23677 461 aa13.23□□□□□ -0.29
VPS54-203ENST00000409558 ZNF140P52738 457 aaPredicted RBP13.23□□□□□ -0.29
VPS54-203ENST00000409558 ABRAXAS2Q15018 415 aa13.23□□□□□ -0.29
VPS54-203ENST00000409558 AP1ARQ63HQ0 302 aa13.23□□□□□ -0.29
VPS54-203ENST00000409558 ANKRD34AQ69YU3 496 aa13.23□□□□□ -0.29
VPS54-203ENST00000409558 BEND7Q8N7W2 519 aaPredicted RBP13.23□□□□□ -0.29
VPS54-203ENST00000409558 OR2T34Q8NGX1 318 aa13.23□□□□□ -0.29
VPS54-203ENST00000409558 OR2T3Q8NH03 318 aa13.23□□□□□ -0.29
VPS54-203ENST00000409558 PNPT1Q8TCS8 783 aaKnown RBP13.23□□□□□ -0.29
VPS54-203ENST00000409558 CD200R1Q8TD46 325 aa13.23□□□□□ -0.29
VPS54-203ENST00000409558 TSSK3Q96PN8 268 aa13.23□□□□□ -0.29
VPS54-203ENST00000409558 RANBP9Q96S59 729 aa13.23□□□□□ -0.29
VPS54-203ENST00000409558 BBS2Q9BXC9 721 aa13.23□□□□□ -0.29
VPS54-203ENST00000409558 NLE1Q9NVX2 485 aaPredicted RBP13.23□□□□□ -0.29
VPS54-203ENST00000409558 SEC22BO75396 215 aa13.22□□□□□ -0.29
VPS54-203ENST00000409558 SLC6A2P23975 617 aa13.22□□□□□ -0.29
VPS54-203ENST00000409558 OR4D2P58180 307 aa13.22□□□□□ -0.29
VPS54-203ENST00000409558 BTG3Q14201 252 aaPredicted RBP13.22□□□□□ -0.29
VPS54-203ENST00000409558 CCDC117Q8IWD4 279 aaPredicted RBP13.22□□□□□ -0.29
VPS54-203ENST00000409558 TSPAN14Q8NG11 270 aa13.22□□□□□ -0.29
VPS54-203ENST00000409558 PRSS51A0A1B0GVH4 220 aa13.22□□□□□ -0.29
VPS54-203ENST00000409558 WASH4PA8MWX3 477 aa13.22□□□□□ -0.29
VPS54-203ENST00000409558 PAPSS2O95340 614 aaPredicted RBP13.22□□□□□ -0.29
VPS54-203ENST00000409558 IL12AP29459 219 aa13.22□□□□□ -0.29
VPS54-203ENST00000409558 TUFMP49411 452 aaKnown RBP13.22□□□□□ -0.29
VPS54-203ENST00000409558 CSRP3P50461 194 aa13.22□□□□□ -0.29
VPS54-203ENST00000409558 BIRC2Q13490 618 aa13.22□□□□□ -0.29
VPS54-203ENST00000409558 TAF1AQ15573 450 aaPredicted RBP13.22□□□□□ -0.29
VPS54-203ENST00000409558 CHRNA6Q15825 494 aa13.22□□□□□ -0.29
VPS54-203ENST00000409558 ARMC3Q5W041 872 aa13.22□□□□□ -0.29
VPS54-203ENST00000409558 BBS7Q8IWZ6 715 aa13.22□□□□□ -0.29
VPS54-203ENST00000409558 OR56A4Q8NGH8 313 aa13.22□□□□□ -0.29
VPS54-203ENST00000409558 ZFP28Q8NHY6 868 aa13.22□□□□□ -0.29
VPS54-203ENST00000409558 MGME1Q9BQP7 344 aa13.22□□□□□ -0.29
VPS54-203ENST00000409558 CORO1BQ9BR76 489 aa13.22□□□□□ -0.29
VPS54-203ENST00000409558 FEM1AQ9BSK4 669 aa13.22□□□□□ -0.29
VPS54-203ENST00000409558 ADNPQ9H2P0 1102 aa13.22□□□□□ -0.29
VPS54-203ENST00000409558 ZFYVE1Q9HBF4 777 aa13.22□□□□□ -0.29
VPS54-203ENST00000409558 KDELR3O43731 214 aa13.22□□□□□ -0.29
VPS54-203ENST00000409558 UGT2B4P06133 528 aa13.22□□□□□ -0.29
VPS54-203ENST00000409558 POLR2JP52435 117 aaKnown RBP13.22□□□□□ -0.29
VPS54-203ENST00000409558 BCL2L1Q07817 233 aa13.22□□□□□ -0.29
VPS54-203ENST00000409558 GCNT7Q6ZNI0 430 aa13.22□□□□□ -0.29
VPS54-203ENST00000409558 CLEC4FQ8N1N0 589 aa13.22□□□□□ -0.29
VPS54-203ENST00000409558 ADCY4Q8NFM4 1077 aa13.22□□□□□ -0.29
VPS54-203ENST00000409558 VN1R3Q9BXE9 311 aa13.22□□□□□ -0.29
VPS54-203ENST00000409558 XRN2Q9H0D6 950 aaKnown RBP eCLIP13.22□□□□□ -0.29
VPS54-203ENST00000409558 PDFQ9HBH1 243 aa13.22□□□□□ -0.29
VPS54-203ENST00000409558 ZNF334Q9HCZ1 680 aaPredicted RBP13.22□□□□□ -0.29
VPS54-203ENST00000409558 RNF11Q9Y3C5 154 aa13.22□□□□□ -0.29
VPS54-203ENST00000409558 GREB1Q4ZG55 1949 aa13.22□□□□□ -0.29
VPS54-203ENST00000409558 TMX2-CTNND1H3BSU7 103 aa13.22□□□□□ -0.29
VPS54-203ENST00000409558 BFSP2Q13515 415 aa13.22□□□□□ -0.29
VPS54-203ENST00000409558 CXorf57Q6NSI4 855 aaKnown RBP13.22□□□□□ -0.29
VPS54-203ENST00000409558 KLHDC10Q6PID8 442 aa13.22□□□□□ -0.29
VPS54-203ENST00000409558 CMTR2Q8IYT2 770 aaKnown RBP13.22□□□□□ -0.29
VPS54-203ENST00000409558 SH3BP1Q9Y3L3 701 aa13.22□□□□□ -0.29
VPS54-203ENST00000409558 ZNF711Q9Y462 761 aa13.22□□□□□ -0.29
VPS54-203ENST00000409558 SYCE1LA8MT33 242 aa13.21□□□□□ -0.29
VPS54-203ENST00000409558 TNFAIP8O95379 198 aa13.21□□□□□ -0.29
VPS54-203ENST00000409558 PCSK6P29122 969 aa13.21□□□□□ -0.29
VPS54-203ENST00000409558 MAGEA11P43364 429 aa13.21□□□□□ -0.29
VPS54-203ENST00000409558 TTPAP49638 278 aa13.21□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 43.4 ms