RNA–Protein interactions for RNA: ENST00000399429.7

COL28A1-201, Transcript of collagen type XXVIII alpha 1 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL28A1, Length 4,277 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1-201ENST00000399429 SPATA33Q96N06 139 aa9.23□□□□□ -0.93
COL28A1-201ENST00000399429 TDRD1Q9BXT4 1180 aaKnown RBP9.23□□□□□ -0.93
COL28A1-201ENST00000399429 PRKD2Q9BZL6 878 aa9.23□□□□□ -0.93
COL28A1-201ENST00000399429 FKBP14Q9NWM8 211 aa9.23□□□□□ -0.93
COL28A1-201ENST00000399429 RDH8Q9NYR8 311 aa9.23□□□□□ -0.93
COL28A1-201ENST00000399429 WWOXQ9NZC7 414 aa9.23□□□□□ -0.93
COL28A1-201ENST00000399429 SNX6Q9UNH7 406 aa9.23□□□□□ -0.93
COL28A1-201ENST00000399429 MRPS7Q9Y2R9 242 aaKnown RBP9.23□□□□□ -0.93
COL28A1-201ENST00000399429 MDM4O15151 490 aa9.22□□□□□ -0.93
COL28A1-201ENST00000399429 ACOX3O15254 700 aa9.22□□□□□ -0.93
COL28A1-201ENST00000399429 PDPK1O15530 556 aa9.22□□□□□ -0.93
COL28A1-201ENST00000399429 SSNA1O43805 119 aa9.22□□□□□ -0.93
COL28A1-201ENST00000399429 AQP1P29972 269 aa9.22□□□□□ -0.93
COL28A1-201ENST00000399429 S100A3P33764 101 aa9.22□□□□□ -0.93
COL28A1-201ENST00000399429 PRIM2P49643 509 aa9.22□□□□□ -0.93
COL28A1-201ENST00000399429 CLCN5P51795 746 aa9.22□□□□□ -0.93
COL28A1-201ENST00000399429 DGKQP52824 942 aa9.22□□□□□ -0.93
COL28A1-201ENST00000399429 C1QTNF8P60827 252 aa9.22□□□□□ -0.93
COL28A1-201ENST00000399429 TP53BP2Q13625 1128 aa9.22□□□□□ -0.93
COL28A1-201ENST00000399429 DDI2Q5TDH0 399 aa9.22□□□□□ -0.93
COL28A1-201ENST00000399429 PXDC1Q5TGL8 231 aa9.22□□□□□ -0.93
COL28A1-201ENST00000399429 STEAP3Q658P3 488 aa9.22□□□□□ -0.93
COL28A1-201ENST00000399429 SCN4BQ8IWT1 228 aa9.22□□□□□ -0.93
COL28A1-201ENST00000399429 NATD1Q8N6N6 113 aa9.22□□□□□ -0.93
COL28A1-201ENST00000399429 KDM1BQ8NB78 822 aa9.22□□□□□ -0.93
COL28A1-201ENST00000399429 TRAPPC12Q8WVT3 735 aa9.22□□□□□ -0.93
COL28A1-201ENST00000399429 PRMT6Q96LA8 375 aaPredicted RBP9.22□□□□□ -0.93
COL28A1-201ENST00000399429 KCNA7Q96RP8 456 aa9.22□□□□□ -0.93
COL28A1-201ENST00000399429 TMEM39BQ9GZU3 492 aa9.22□□□□□ -0.93
COL28A1-201ENST00000399429 ACAD9Q9H845 621 aa9.22□□□□□ -0.93
COL28A1-201ENST00000399429 DUS2Q9NX74 493 aaKnown RBP9.22□□□□□ -0.93
COL28A1-201ENST00000399429 UBIAD1Q9Y5Z9 338 aa9.22□□□□□ -0.93
COL28A1-201ENST00000399429 MED1Q15648 1581 aaPredicted RBP9.22□□□□□ -0.93
COL28A1-201ENST00000399429 RIMBP3CA6NJZ7 1639 aa9.22□□□□□ -0.93
COL28A1-201ENST00000399429 RIMBP3BA6NNM3 1639 aa9.22□□□□□ -0.93
COL28A1-201ENST00000399429 RIMBP3Q9UFD9 1639 aa9.22□□□□□ -0.93
COL28A1-201ENST00000399429 IGKV6D-41A0A0C4DH26 115 aa9.22□□□□□ -0.93
COL28A1-201ENST00000399429 SMIM30A4D0T7 59 aa9.22□□□□□ -0.93
COL28A1-201ENST00000399429 TTC34A8MYJ7 566 aa9.22□□□□□ -0.93
COL28A1-201ENST00000399429 LYPLA2O95372 231 aa9.22□□□□□ -0.93
COL28A1-201ENST00000399429 C7P10643 843 aa9.22□□□□□ -0.93
COL28A1-201ENST00000399429 SLC2A3P11169 496 aa9.22□□□□□ -0.93
COL28A1-201ENST00000399429 CD1EP15812 388 aa9.22□□□□□ -0.93
COL28A1-201ENST00000399429 C4BPBP20851 252 aa9.22□□□□□ -0.93
COL28A1-201ENST00000399429 CRHBPP24387 322 aa9.22□□□□□ -0.93
COL28A1-201ENST00000399429 MYL9P24844 172 aa9.22□□□□□ -0.93
COL28A1-201ENST00000399429 SHMT2P34897 504 aa9.22□□□□□ -0.93
COL28A1-201ENST00000399429 PIK3CGP48736 1102 aa9.22□□□□□ -0.93
COL28A1-201ENST00000399429 TKTL1P51854 596 aa9.22□□□□□ -0.93
COL28A1-201ENST00000399429 CAPSQ13938 189 aa9.22□□□□□ -0.93
COL28A1-201ENST00000399429 CYBRD1Q53TN4 286 aa9.22□□□□□ -0.93
COL28A1-201ENST00000399429 HECTD2Q5U5R9 776 aa9.22□□□□□ -0.93
COL28A1-201ENST00000399429 ZDHHC21Q8IVQ6 265 aa9.22□□□□□ -0.93
COL28A1-201ENST00000399429 TMEM132CQ8N3T6 1108 aa9.22□□□□□ -0.93
COL28A1-201ENST00000399429 DEDD2Q8WXF8 326 aa9.22□□□□□ -0.93
COL28A1-201ENST00000399429 PIWIL1Q96J94 861 aaKnown RBP9.22□□□□□ -0.93
COL28A1-201ENST00000399429 OR52E6Q96RD3 313 aa9.22□□□□□ -0.93
COL28A1-201ENST00000399429 TWNKQ96RR1 684 aa9.22□□□□□ -0.93
COL28A1-201ENST00000399429 AS3MTQ9HBK9 375 aa9.22□□□□□ -0.93
COL28A1-201ENST00000399429 ZBTB20Q9HC78 741 aaPredicted RBP9.22□□□□□ -0.93
COL28A1-201ENST00000399429 CNTNAP4Q9C0A0 1308 aa9.22□□□□□ -0.93
COL28A1-201ENST00000399429 PSMA1P25786 263 aaKnown RBP9.22□□□□□ -0.93
COL28A1-201ENST00000399429 UFM1P61960 85 aa9.22□□□□□ -0.93
COL28A1-201ENST00000399429 IL18Q14116 193 aa9.22□□□□□ -0.93
COL28A1-201ENST00000399429 GARNL3Q5VVW2 1013 aa9.22□□□□□ -0.93
COL28A1-201ENST00000399429 BTBD8Q5XKL5 378 aa9.22□□□□□ -0.93
COL28A1-201ENST00000399429 NIPA1Q7RTP0 329 aa9.22□□□□□ -0.93
COL28A1-201ENST00000399429 OR52J3Q8NH60 311 aa9.22□□□□□ -0.93
COL28A1-201ENST00000399429 OR5K1Q8NHB7 308 aa9.22□□□□□ -0.93
COL28A1-201ENST00000399429 Q96MT0 163 aa9.22□□□□□ -0.93
COL28A1-201ENST00000399429 MED28Q9H204 178 aa9.22□□□□□ -0.93
COL28A1-201ENST00000399429 CCSER2Q9H7U1 834 aa9.22□□□□□ -0.93
COL28A1-201ENST00000399429 TAS2R13Q9NYV9 303 aa9.22□□□□□ -0.93
COL28A1-201ENST00000399429 KLK14Q9P0G3 267 aa9.22□□□□□ -0.93
COL28A1-201ENST00000399429 SSR3Q9UNL2 185 aa9.22□□□□□ -0.93
COL28A1-201ENST00000399429 KCNH4Q9UQ05 1017 aa9.22□□□□□ -0.93
COL28A1-201ENST00000399429 CFL2Q9Y281 166 aa9.22□□□□□ -0.93
COL28A1-201ENST00000399429 PCDHGB6Q9Y5F9 930 aa9.22□□□□□ -0.93
COL28A1-201ENST00000399429 ARPC4-TTLL3A0A0A6YYG9 625 aa9.22□□□□□ -0.93
COL28A1-201ENST00000399429 HMX2A2RU54 273 aa9.22□□□□□ -0.93
COL28A1-201ENST00000399429 B4GALT5O43286 388 aa9.22□□□□□ -0.93
COL28A1-201ENST00000399429 VPS26AO75436 327 aa9.22□□□□□ -0.93
COL28A1-201ENST00000399429 ALX3O95076 343 aa9.22□□□□□ -0.93
COL28A1-201ENST00000399429 IFNA16P05015 189 aa9.22□□□□□ -0.93
COL28A1-201ENST00000399429 LCKP06239 509 aa9.22□□□□□ -0.93
COL28A1-201ENST00000399429 PIRTP0C851 137 aa9.22□□□□□ -0.93
COL28A1-201ENST00000399429 SLC1A2P43004 574 aa9.22□□□□□ -0.93
COL28A1-201ENST00000399429 NIPAL4Q0D2K0 466 aa9.22□□□□□ -0.93
COL28A1-201ENST00000399429 ANGPT1Q15389 498 aa9.22□□□□□ -0.93
COL28A1-201ENST00000399429 NOXA1Q86UR1 476 aa9.22□□□□□ -0.93
COL28A1-201ENST00000399429 ZDHHC17Q8IUH5 632 aa9.22□□□□□ -0.93
COL28A1-201ENST00000399429 BBS7Q8IWZ6 715 aa9.22□□□□□ -0.93
COL28A1-201ENST00000399429 FAM20CQ8IXL6 584 aa9.22□□□□□ -0.93
COL28A1-201ENST00000399429 SP8Q8IXZ3 490 aa9.22□□□□□ -0.93
COL28A1-201ENST00000399429 ADGRG5Q8IZF4 528 aa9.22□□□□□ -0.93
COL28A1-201ENST00000399429 METTL4Q8N3J2 472 aa9.22□□□□□ -0.93
COL28A1-201ENST00000399429 CERS5Q8N5B7 392 aa9.22□□□□□ -0.93
COL28A1-201ENST00000399429 SLC43A3Q8NBI5 491 aa9.22□□□□□ -0.93
COL28A1-201ENST00000399429 FAM83FQ8NEG4 500 aaPredicted RBP9.22□□□□□ -0.93
COL28A1-201ENST00000399429 LRCH3Q96II8 777 aa9.22□□□□□ -0.93
Retrieved 100 of 20,778 RNA–protein pairs in 38 ms