RNA–Protein interactions for RNA: ENST00000394269.7

TCOF1-203, Transcript of treacle ribosome biogenesis factor 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene TCOF1, Length 3,400 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-203ENST00000394269 SPATA16Q9BXB7 569 aa11.01□□□□□ -0.65
TCOF1-203ENST00000394269 TUBB1Q9H4B7 451 aa11.01□□□□□ -0.65
TCOF1-203ENST00000394269 BRD9Q9H8M2 597 aa11.01□□□□□ -0.65
TCOF1-203ENST00000394269 MEAF6Q9HAF1 191 aa11.01□□□□□ -0.65
TCOF1-203ENST00000394269 S100A14Q9HCY8 104 aa11.01□□□□□ -0.65
TCOF1-203ENST00000394269 CORO1CQ9ULV4 474 aaPredicted RBP11.01□□□□□ -0.65
TCOF1-203ENST00000394269 RPL26L1Q9UNX3 145 aaKnown RBP11.01□□□□□ -0.65
TCOF1-203ENST00000394269 E7ENX8 843 aa11□□□□□ -0.65
TCOF1-203ENST00000394269 MRASO14807 208 aa11□□□□□ -0.65
TCOF1-203ENST00000394269 DNAJA2O60884 412 aa11□□□□□ -0.65
TCOF1-203ENST00000394269 CHEK2O96017 543 aa11□□□□□ -0.65
TCOF1-203ENST00000394269 SNRPB2P08579 225 aaKnown RBP11□□□□□ -0.65
TCOF1-203ENST00000394269 ALDOCP09972 364 aaKnown RBP11□□□□□ -0.65
TCOF1-203ENST00000394269 PSME3P61289 254 aa11□□□□□ -0.65
TCOF1-203ENST00000394269 CREMQ03060 361 aa11□□□□□ -0.65
TCOF1-203ENST00000394269 STX5Q13190 355 aa11□□□□□ -0.65
TCOF1-203ENST00000394269 CAPRIN1Q14444 709 aaKnown RBP11□□□□□ -0.65
TCOF1-203ENST00000394269 ATP13A5Q4VNC0 1218 aa11□□□□□ -0.65
TCOF1-203ENST00000394269 CYHR1Q6ZMK1 362 aa11□□□□□ -0.65
TCOF1-203ENST00000394269 RHEBL1Q8TAI7 183 aa11□□□□□ -0.65
TCOF1-203ENST00000394269 KCNJ9Q92806 393 aa11□□□□□ -0.65
TCOF1-203ENST00000394269 VPS33AQ96AX1 596 aa11□□□□□ -0.65
TCOF1-203ENST00000394269 L3HYPDHQ96EM0 354 aa11□□□□□ -0.65
TCOF1-203ENST00000394269 LRCH3Q96II8 777 aa11□□□□□ -0.65
TCOF1-203ENST00000394269 RETREG1Q9H6L5 497 aa11□□□□□ -0.65
TCOF1-203ENST00000394269 ARHGEF15O94989 841 aa11□□□□□ -0.65
TCOF1-203ENST00000394269 WISP3O95389 354 aaPredicted RBP11□□□□□ -0.65
TCOF1-203ENST00000394269 TSPAN12O95859 305 aa11□□□□□ -0.65
TCOF1-203ENST00000394269 ARSIQ5FYB1 569 aa11□□□□□ -0.65
TCOF1-203ENST00000394269 IL27RAQ6UWB1 636 aa11□□□□□ -0.65
TCOF1-203ENST00000394269 SNX20Q7Z614 316 aa11□□□□□ -0.65
TCOF1-203ENST00000394269 RBFAQ8N0V3 343 aa11□□□□□ -0.65
TCOF1-203ENST00000394269 MYO1HQ8N1T3 1032 aa11□□□□□ -0.65
TCOF1-203ENST00000394269 SPPL3Q8TCT6 385 aa11□□□□□ -0.65
TCOF1-203ENST00000394269 B4GALT6Q9UBX8 382 aa11□□□□□ -0.65
TCOF1-203ENST00000394269 APPL1Q9UKG1 709 aa11□□□□□ -0.65
TCOF1-203ENST00000394269 ADAMTS6Q9UKP5 1117 aa11□□□□□ -0.65
TCOF1-203ENST00000394269 ZNF510Q9Y2H8 683 aa11□□□□□ -0.65
TCOF1-203ENST00000394269 COL4A4P53420 1690 aaPredicted RBP11□□□□□ -0.65
TCOF1-203ENST00000394269 POLR2EP19388 210 aaKnown RBP11□□□□□ -0.65
TCOF1-203ENST00000394269 SPAM1P38567 509 aa11□□□□□ -0.65
TCOF1-203ENST00000394269 NNMTP40261 264 aa11□□□□□ -0.65
TCOF1-203ENST00000394269 CLCN7P51798 805 aa11□□□□□ -0.65
TCOF1-203ENST00000394269 HK2P52789 917 aa11□□□□□ -0.65
TCOF1-203ENST00000394269 MTTPP55157 894 aa11□□□□□ -0.65
TCOF1-203ENST00000394269 TSTA3Q13630 321 aaPredicted RBP11□□□□□ -0.65
TCOF1-203ENST00000394269 SKIV2LQ15477 1246 aaKnown RBP11□□□□□ -0.65
TCOF1-203ENST00000394269 TMEM240Q5SV17 173 aa11□□□□□ -0.65
TCOF1-203ENST00000394269 FAM109BQ6ICB4 259 aaPredicted RBP11□□□□□ -0.65
TCOF1-203ENST00000394269 USP45Q70EL2 814 aa11□□□□□ -0.65
TCOF1-203ENST00000394269 KBTBD2Q8IY47 623 aa11□□□□□ -0.65
TCOF1-203ENST00000394269 STK40Q8N2I9 435 aa11□□□□□ -0.65
TCOF1-203ENST00000394269 BEND7Q8N7W2 519 aaPredicted RBP11□□□□□ -0.65
TCOF1-203ENST00000394269 FNDC5Q8NAU1 212 aa11□□□□□ -0.65
TCOF1-203ENST00000394269 PLEKHG4BQ96PX9 1271 aa11□□□□□ -0.65
TCOF1-203ENST00000394269 SPHK2Q9NRA0 654 aa11□□□□□ -0.65
TCOF1-203ENST00000394269 WWOXQ9NZC7 414 aa11□□□□□ -0.65
TCOF1-203ENST00000394269 RIMKLBQ9ULI2 386 aa11□□□□□ -0.65
TCOF1-203ENST00000394269 OR2AG2A6NM03 316 aa10.99□□□□□ -0.65
TCOF1-203ENST00000394269 CLGNO14967 610 aa10.99□□□□□ -0.65
TCOF1-203ENST00000394269 LATS1O95835 1130 aa10.99□□□□□ -0.65
TCOF1-203ENST00000394269 CAPN1P07384 714 aa10.99□□□□□ -0.65
TCOF1-203ENST00000394269 LHCGRP22888 699 aa10.99□□□□□ -0.65
TCOF1-203ENST00000394269 ME2P23368 584 aa10.99□□□□□ -0.65
TCOF1-203ENST00000394269 GGT5P36269 586 aa10.99□□□□□ -0.65
TCOF1-203ENST00000394269 RGS4P49798 205 aa10.99□□□□□ -0.65
TCOF1-203ENST00000394269 SUOXP51687 545 aa10.99□□□□□ -0.65
TCOF1-203ENST00000394269 CLCN4P51793 760 aa10.99□□□□□ -0.65
TCOF1-203ENST00000394269 PPIGQ13427 754 aaKnown RBP eCLIP10.99□□□□□ -0.652e-7■■□□□ 13.8
TCOF1-203ENST00000394269 SQLEQ14534 574 aa10.99□□□□□ -0.65
TCOF1-203ENST00000394269 PHKG1Q16816 387 aa10.99□□□□□ -0.65
TCOF1-203ENST00000394269 UGT3A2Q3SY77 523 aa10.99□□□□□ -0.65
TCOF1-203ENST00000394269 CARD16Q5EG05 197 aa10.99□□□□□ -0.65
TCOF1-203ENST00000394269 REP15Q6BDI9 236 aa10.99□□□□□ -0.65
TCOF1-203ENST00000394269 Q6ZVL8 140 aa10.99□□□□□ -0.65
TCOF1-203ENST00000394269 LARP4Q71RC2 724 aaKnown RBP eCLIP10.99□□□□□ -0.65
TCOF1-203ENST00000394269 ITFG1Q8TB96 612 aa10.99□□□□□ -0.65
TCOF1-203ENST00000394269 PYCR2Q96C36 320 aa10.99□□□□□ -0.65
TCOF1-203ENST00000394269 IGFLR1Q9H665 355 aa10.99□□□□□ -0.65
TCOF1-203ENST00000394269 COPS7BQ9H9Q2 264 aaPredicted RBP10.99□□□□□ -0.65
TCOF1-203ENST00000394269 POLG2Q9UHN1 485 aa10.99□□□□□ -0.65
TCOF1-203ENST00000394269 MBD1Q9UIS9 605 aaPredicted RBP10.99□□□□□ -0.65
TCOF1-203ENST00000394269 KPNA3O00505 521 aaPredicted RBP10.99□□□□□ -0.65
TCOF1-203ENST00000394269 ANGPT2O15123 496 aa10.99□□□□□ -0.65
TCOF1-203ENST00000394269 NRP2O60462 931 aa10.99□□□□□ -0.65
TCOF1-203ENST00000394269 UBTFL6P0CB48 400 aaPredicted RBP10.99□□□□□ -0.65
TCOF1-203ENST00000394269 PTSQ03393 145 aa10.99□□□□□ -0.65
TCOF1-203ENST00000394269 PGM2L1Q6PCE3 622 aa10.99□□□□□ -0.65
TCOF1-203ENST00000394269 GPRIN3Q6ZVF9 776 aa10.99□□□□□ -0.65
TCOF1-203ENST00000394269 CPSF7Q8N684 471 aaKnown RBP10.99□□□□□ -0.65
TCOF1-203ENST00000394269 OR56A4Q8NGH8 313 aa10.99□□□□□ -0.65
TCOF1-203ENST00000394269 HMGCLL1Q8TB92 370 aa10.99□□□□□ -0.65
TCOF1-203ENST00000394269 UCMAQ8WVF2 138 aa10.99□□□□□ -0.65
TCOF1-203ENST00000394269 MAELQ96JY0 434 aaKnown RBP10.99□□□□□ -0.65
TCOF1-203ENST00000394269 COPS8Q99627 209 aa10.99□□□□□ -0.65
TCOF1-203ENST00000394269 IPPKQ9H8X2 491 aa10.99□□□□□ -0.65
TCOF1-203ENST00000394269 GNPTGQ9UJJ9 305 aa10.99□□□□□ -0.65
TCOF1-203ENST00000394269 DHRS7Q9Y394 339 aa10.99□□□□□ -0.65
TCOF1-203ENST00000394269 FFAR2O15552 330 aa10.99□□□□□ -0.65
TCOF1-203ENST00000394269 SYNCRIPO60506 623 aaKnown RBP10.99□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 34.2 ms