RNA–Protein interactions for RNA: ENST00000392003.6

COL6A3-204, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 2 BASIC

Gene COL6A3, Length 3,464 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-204ENST00000392003 RIMS3Q9UJD0 308 aa9.55□□□□□ -0.88
COL6A3-204ENST00000392003 FADS3Q9Y5Q0 445 aa9.55□□□□□ -0.88
COL6A3-204ENST00000392003 AP4B1Q9Y6B7 739 aa9.55□□□□□ -0.88
COL6A3-204ENST00000392003 C15orf38-AP3S2A0A0A6YYH1 394 aa9.55□□□□□ -0.88
COL6A3-204ENST00000392003 A0A0B4J203 849 aa9.55□□□□□ -0.88
COL6A3-204ENST00000392003 LRRC14BA6NHZ5 514 aa9.55□□□□□ -0.88
COL6A3-204ENST00000392003 H0Y626 953 aa9.55□□□□□ -0.88
COL6A3-204ENST00000392003 ECI2O75521 394 aa9.55□□□□□ -0.88
COL6A3-204ENST00000392003 VNN2O95498 520 aa9.55□□□□□ -0.88
COL6A3-204ENST00000392003 ZBTB11O95625 1053 aaPredicted RBP9.55□□□□□ -0.88
COL6A3-204ENST00000392003 MLYCDO95822 493 aa9.55□□□□□ -0.88
COL6A3-204ENST00000392003 LINC00032P0C843 101 aa9.55□□□□□ -0.88
COL6A3-204ENST00000392003 PRSS56P0CW18 603 aa9.55□□□□□ -0.88
COL6A3-204ENST00000392003 MBL2P11226 248 aaPredicted RBP9.55□□□□□ -0.88
COL6A3-204ENST00000392003 ARSAP15289 507 aa9.55□□□□□ -0.88
COL6A3-204ENST00000392003 TCEA1P23193 301 aaKnown RBP9.55□□□□□ -0.88
COL6A3-204ENST00000392003 RGRP47804 291 aa9.55□□□□□ -0.88
COL6A3-204ENST00000392003 PSMD8P48556 350 aa9.55□□□□□ -0.88
COL6A3-204ENST00000392003 TUBA1BP68363 451 aa9.55□□□□□ -0.88
COL6A3-204ENST00000392003 RHDQ02161 417 aa9.55□□□□□ -0.88
COL6A3-204ENST00000392003 RELAQ04206 551 aa9.55□□□□□ -0.88
COL6A3-204ENST00000392003 GPNMBQ14956 572 aa9.55□□□□□ -0.88
COL6A3-204ENST00000392003 MYLK3Q32MK0 819 aa9.55□□□□□ -0.88
COL6A3-204ENST00000392003 CNKSR3Q6P9H4 555 aa9.55□□□□□ -0.88
COL6A3-204ENST00000392003 KLHDC10Q6PID8 442 aa9.55□□□□□ -0.88
COL6A3-204ENST00000392003 FIP1L1Q6UN15 594 aaKnown RBP9.55□□□□□ -0.88
COL6A3-204ENST00000392003 CYP2R1Q6VVX0 501 aa9.55□□□□□ -0.88
COL6A3-204ENST00000392003 TUBA1AQ71U36 451 aa9.55□□□□□ -0.88
COL6A3-204ENST00000392003 ARPINQ7Z6K5 226 aa9.55□□□□□ -0.88
COL6A3-204ENST00000392003 OR56A4Q8NGH8 313 aa9.55□□□□□ -0.88
COL6A3-204ENST00000392003 AUTS2Q8WXX7 1259 aa9.55□□□□□ -0.88
COL6A3-204ENST00000392003 GFM2Q969S9 779 aaKnown RBP9.55□□□□□ -0.88
COL6A3-204ENST00000392003 C3orf30Q96M34 536 aa9.55□□□□□ -0.88
COL6A3-204ENST00000392003 GPR63Q9BZJ6 419 aa9.55□□□□□ -0.88
COL6A3-204ENST00000392003 CLK4Q9HAZ1 481 aaKnown RBP9.55□□□□□ -0.88
COL6A3-204ENST00000392003 PAK6Q9NQU5 681 aaPredicted RBP9.55□□□□□ -0.88
COL6A3-204ENST00000392003 MTRRQ9UBK8 725 aa9.55□□□□□ -0.88
COL6A3-204ENST00000392003 SARDHQ9UL12 918 aa9.55□□□□□ -0.88
COL6A3-204ENST00000392003 OGDHLQ9ULD0 1010 aa9.55□□□□□ -0.88
COL6A3-204ENST00000392003 TMCC3Q9ULS5 477 aa9.55□□□□□ -0.88
COL6A3-204ENST00000392003 BTRCQ9Y297 605 aa9.55□□□□□ -0.88
COL6A3-204ENST00000392003 KANSL1LA0AUZ9 987 aa9.55□□□□□ -0.88
COL6A3-204ENST00000392003 NCF1BA6NI72 391 aaPredicted RBP9.55□□□□□ -0.88
COL6A3-204ENST00000392003 NCF1CA8MVU1 366 aaPredicted RBP9.55□□□□□ -0.88
COL6A3-204ENST00000392003 H3BMM5 538 aa9.55□□□□□ -0.88
COL6A3-204ENST00000392003 DENRO43583 198 aaKnown RBP9.55□□□□□ -0.88
COL6A3-204ENST00000392003 SGTAO43765 313 aa9.55□□□□□ -0.88
COL6A3-204ENST00000392003 STC2O76061 302 aa9.55□□□□□ -0.88
COL6A3-204ENST00000392003 S100BP04271 92 aaPredicted RBP9.55□□□□□ -0.88
COL6A3-204ENST00000392003 NCF1P14598 390 aaPredicted RBP9.55□□□□□ -0.88
COL6A3-204ENST00000392003 EPHB3P54753 998 aa9.55□□□□□ -0.88
COL6A3-204ENST00000392003 RHOAP61586 193 aa9.55□□□□□ -0.88
COL6A3-204ENST00000392003 LIN52Q52LA3 116 aa9.55□□□□□ -0.88
COL6A3-204ENST00000392003 IL23RQ5VWK5 629 aa9.55□□□□□ -0.88
COL6A3-204ENST00000392003 GPSM1Q86YR5 675 aa9.55□□□□□ -0.88
COL6A3-204ENST00000392003 STK40Q8N2I9 435 aa9.55□□□□□ -0.88
COL6A3-204ENST00000392003 CARNMT1Q8N4J0 409 aa9.55□□□□□ -0.88
COL6A3-204ENST00000392003 ZNF784Q8NCA9 323 aaPredicted RBP9.55□□□□□ -0.88
COL6A3-204ENST00000392003 SH3RF2Q8TEC5 729 aa9.55□□□□□ -0.88
COL6A3-204ENST00000392003 CNBD2Q96M20 576 aa9.55□□□□□ -0.88
COL6A3-204ENST00000392003 KLHL32Q96NJ5 620 aa9.55□□□□□ -0.88
COL6A3-204ENST00000392003 NSUN5Q96P11 429 aaKnown RBP9.55□□□□□ -0.88
COL6A3-204ENST00000392003 PRPF18Q99633 342 aaKnown RBP9.55□□□□□ -0.88
COL6A3-204ENST00000392003 RIC8BQ9NVN3 520 aa9.55□□□□□ -0.88
COL6A3-204ENST00000392003 POLR3BQ9NW08 1133 aaPredicted RBP9.55□□□□□ -0.88
COL6A3-204ENST00000392003 SPG21Q9NZD8 308 aa9.55□□□□□ -0.88
COL6A3-204ENST00000392003 SELENONQ9NZV5 590 aa9.55□□□□□ -0.88
COL6A3-204ENST00000392003 NDUFA13Q9P0J0 144 aa9.55□□□□□ -0.88
COL6A3-204ENST00000392003 AFF4Q9UHB7 1163 aaKnown RBP9.55□□□□□ -0.88
COL6A3-204ENST00000392003 FKBPLQ9UIM3 349 aa9.55□□□□□ -0.88
COL6A3-204ENST00000392003 SNX13Q9Y5W8 968 aa9.55□□□□□ -0.88
COL6A3-204ENST00000392003 VWA8A3KMH1 1905 aa9.55□□□□□ -0.88
COL6A3-204ENST00000392003 PCM1Q15154 2024 aa9.55□□□□□ -0.88
COL6A3-204ENST00000392003 NPEPPSL1A6NEC2 478 aa9.54□□□□□ -0.88
COL6A3-204ENST00000392003 ANKRD66B4E2M5 251 aa9.54□□□□□ -0.88
COL6A3-204ENST00000392003 C1RP00736 705 aa9.54□□□□□ -0.88
COL6A3-204ENST00000392003 TFPTP0C1Z6 253 aa9.54□□□□□ -0.88
COL6A3-204ENST00000392003 CDK4P11802 303 aa9.54□□□□□ -0.88
COL6A3-204ENST00000392003 MTHFD2P13995 350 aa9.54□□□□□ -0.88
COL6A3-204ENST00000392003 GPX3P22352 226 aa9.54□□□□□ -0.88
COL6A3-204ENST00000392003 KCNK10P57789 538 aa9.54□□□□□ -0.88
COL6A3-204ENST00000392003 NR1D2Q14995 579 aa9.54□□□□□ -0.88
COL6A3-204ENST00000392003 TCTN1Q2MV58 587 aa9.54□□□□□ -0.88
COL6A3-204ENST00000392003 UGT3A2Q3SY77 523 aa9.54□□□□□ -0.88
COL6A3-204ENST00000392003 KANK2Q63ZY3 851 aa9.54□□□□□ -0.88
COL6A3-204ENST00000392003 SLC8B1Q6J4K2 584 aa9.54□□□□□ -0.88
COL6A3-204ENST00000392003 FRA10AC1Q70Z53 315 aa9.54□□□□□ -0.88
COL6A3-204ENST00000392003 SPATA19Q7Z5L4 167 aa9.54□□□□□ -0.88
COL6A3-204ENST00000392003 SAMD14Q8IZD0 417 aaPredicted RBP9.54□□□□□ -0.88
COL6A3-204ENST00000392003 MARVELD2Q8N4S9 558 aa9.54□□□□□ -0.88
COL6A3-204ENST00000392003 MDGA1Q8NFP4 955 aa9.54□□□□□ -0.88
COL6A3-204ENST00000392003 BCL7CQ8WUZ0 217 aaPredicted RBP9.54□□□□□ -0.88
COL6A3-204ENST00000392003 HGH1Q9BTY7 390 aa9.54□□□□□ -0.88
COL6A3-204ENST00000392003 BPIFA1Q9NP55 256 aa9.54□□□□□ -0.88
COL6A3-204ENST00000392003 CDC7O00311 574 aa9.54□□□□□ -0.88
COL6A3-204ENST00000392003 STX16O14662 325 aa9.54□□□□□ -0.88
COL6A3-204ENST00000392003 RNASEH2AO75792 299 aaKnown RBP9.54□□□□□ -0.88
COL6A3-204ENST00000392003 C8BP07358 591 aa9.54□□□□□ -0.88
COL6A3-204ENST00000392003 ALDOCP09972 364 aaKnown RBP9.54□□□□□ -0.88
COL6A3-204ENST00000392003 SLC7A1P30825 629 aa9.54□□□□□ -0.88
Retrieved 100 of 20,778 RNA–protein pairs in 22.7 ms