RNA–Protein interactions for RNA: ENST00000376646.3

VPS13A-206, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 5 BASIC

Gene VPS13A, Length 2,262 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-206ENST00000376646 ST6GAL2Q96JF0 529 aa2.1□□□□□ -2.07
VPS13A-206ENST00000376646 SLC41A2Q96JW4 573 aa2.1□□□□□ -2.07
VPS13A-206ENST00000376646 PPP1R13BQ96KQ4 1090 aa2.1□□□□□ -2.07
VPS13A-206ENST00000376646 FAM110AQ9BQ89 295 aa2.1□□□□□ -2.07
VPS13A-206ENST00000376646 LRRC1Q9BTT6 524 aa2.1□□□□□ -2.07
VPS13A-206ENST00000376646 FSD1Q9BTV5 496 aa2.1□□□□□ -2.07
VPS13A-206ENST00000376646 RANGRFQ9HD47 186 aaPredicted RBP2.1□□□□□ -2.07
VPS13A-206ENST00000376646 RPS6KA6Q9UK32 745 aa2.1□□□□□ -2.07
VPS13A-206ENST00000376646 DLGAP4Q9Y2H0 992 aa2.1□□□□□ -2.07
VPS13A-206ENST00000376646 KLHL20Q9Y2M5 609 aa2.1□□□□□ -2.07
VPS13A-206ENST00000376646 RPS6KL1Q9Y6S9 549 aa2.1□□□□□ -2.07
VPS13A-206ENST00000376646 B4DLN1 442 aa2.09□□□□□ -2.07
VPS13A-206ENST00000376646 BEST1O76090 585 aa2.09□□□□□ -2.07
VPS13A-206ENST00000376646 KCNK5O95279 499 aa2.09□□□□□ -2.07
VPS13A-206ENST00000376646 UBA7P41226 1012 aa2.09□□□□□ -2.07
VPS13A-206ENST00000376646 PIK3CAP42336 1068 aa2.09□□□□□ -2.07
VPS13A-206ENST00000376646 PSMC6P62333 389 aa2.09□□□□□ -2.07
VPS13A-206ENST00000376646 ZNF234Q14588 700 aa2.09□□□□□ -2.07
VPS13A-206ENST00000376646 TMEM30BQ3MIR4 351 aa2.09□□□□□ -2.07
VPS13A-206ENST00000376646 KIAA0930Q6ICG6 404 aaPredicted RBP2.09□□□□□ -2.07
VPS13A-206ENST00000376646 TRNP1Q6NT89 227 aa2.09□□□□□ -2.07
VPS13A-206ENST00000376646 SARM1Q6SZW1 724 aa2.09□□□□□ -2.07
VPS13A-206ENST00000376646 TICAM2Q86XR7 235 aa2.09□□□□□ -2.07
VPS13A-206ENST00000376646 FAM76AQ8TAV0 307 aa2.09□□□□□ -2.07
VPS13A-206ENST00000376646 ARHGEF26Q96DR7 871 aa2.09□□□□□ -2.07
VPS13A-206ENST00000376646 SRSF8Q9BRL6 282 aaKnown RBP2.09□□□□□ -2.07
VPS13A-206ENST00000376646 RBM4Q9BWF3 364 aaKnown RBP2.09□□□□□ -2.07
VPS13A-206ENST00000376646 MAK16Q9BXY0 300 aaKnown RBP2.09□□□□□ -2.07
VPS13A-206ENST00000376646 UPF2Q9HAU5 1272 aaKnown RBP2.09□□□□□ -2.07
VPS13A-206ENST00000376646 ACSS1Q9NUB1 689 aaPredicted RBP2.09□□□□□ -2.07
VPS13A-206ENST00000376646 MTMR6Q9Y217 621 aa2.09□□□□□ -2.07
VPS13A-206ENST00000376646 TMEM5Q9Y2B1 443 aa2.09□□□□□ -2.07
VPS13A-206ENST00000376646 KCNK7Q9Y2U2 307 aa2.09□□□□□ -2.07
VPS13A-206ENST00000376646 SESN1Q9Y6P5 492 aa2.09□□□□□ -2.07
VPS13A-206ENST00000376646 PTPRCP08575 1304 aa2.09□□□□□ -2.08
VPS13A-206ENST00000376646 C1orf226A1L170 272 aa2.08□□□□□ -2.08
VPS13A-206ENST00000376646 ZNHIT1O43257 154 aa2.08□□□□□ -2.08
VPS13A-206ENST00000376646 CIDEAO60543 219 aa2.08□□□□□ -2.08
VPS13A-206ENST00000376646 NDUFS3O75489 264 aa2.08□□□□□ -2.08
VPS13A-206ENST00000376646 SLC25A12O75746 678 aa2.08□□□□□ -2.08
VPS13A-206ENST00000376646 HOXB5P09067 269 aa2.08□□□□□ -2.08
VPS13A-206ENST00000376646 ZNF182P17025 639 aaPredicted RBP2.08□□□□□ -2.08
VPS13A-206ENST00000376646 GABRB1P18505 474 aa2.08□□□□□ -2.08
VPS13A-206ENST00000376646 POLR2CP19387 275 aaPredicted RBP2.08□□□□□ -2.08
VPS13A-206ENST00000376646 RRM1P23921 792 aa2.08□□□□□ -2.08
VPS13A-206ENST00000376646 KRT20P35900 424 aa2.08□□□□□ -2.08
VPS13A-206ENST00000376646 DCTP40126 519 aa2.08□□□□□ -2.08
VPS13A-206ENST00000376646 VEGFCP49767 419 aa2.08□□□□□ -2.08
VPS13A-206ENST00000376646 TAS2R38P59533 333 aa2.08□□□□□ -2.08
VPS13A-206ENST00000376646 CSNK2A1P68400 391 aaPredicted RBP2.08□□□□□ -2.08
VPS13A-206ENST00000376646 RPL24P83731 157 aaKnown RBP2.08□□□□□ -2.08
VPS13A-206ENST00000376646 STK4Q13043 487 aa2.08□□□□□ -2.08
VPS13A-206ENST00000376646 WDR38Q5JTN6 314 aa2.08□□□□□ -2.08
VPS13A-206ENST00000376646 PLEKHA7Q6IQ23 1121 aa2.08□□□□□ -2.08
VPS13A-206ENST00000376646 BRAT1Q6PJG6 821 aa2.08□□□□□ -2.08
VPS13A-206ENST00000376646 TMCO3Q6UWJ1 677 aa2.08□□□□□ -2.08
VPS13A-206ENST00000376646 GLDNQ6ZMI3 551 aaPredicted RBP2.08□□□□□ -2.08
VPS13A-206ENST00000376646 C15orf39Q6ZRI6 1047 aa2.08□□□□□ -2.08
VPS13A-206ENST00000376646 NRROSQ86YC3 692 aa2.08□□□□□ -2.08
VPS13A-206ENST00000376646 TEX11Q8IYF3 940 aa2.08□□□□□ -2.08
VPS13A-206ENST00000376646 CSNK2A3Q8NEV1 391 aa2.08□□□□□ -2.08
VPS13A-206ENST00000376646 OR14L1PQ8NHC6 308 aa2.08□□□□□ -2.08
VPS13A-206ENST00000376646 ELMOD3Q96FG2 381 aa2.08□□□□□ -2.08
VPS13A-206ENST00000376646 TMEM68Q96MH6 324 aa2.08□□□□□ -2.08
VPS13A-206ENST00000376646 SMC6Q96SB8 1091 aa2.08□□□□□ -2.08
VPS13A-206ENST00000376646 IFIH1Q9BYX4 1025 aaKnown RBP2.08□□□□□ -2.08
VPS13A-206ENST00000376646 PDZD7Q9H5P4 517 aa2.08□□□□□ -2.08
VPS13A-206ENST00000376646 SLC28A3Q9HAS3 691 aa2.08□□□□□ -2.08
VPS13A-206ENST00000376646 SETD4Q9NVD3 440 aa2.08□□□□□ -2.08
VPS13A-206ENST00000376646 FBXL17Q9UF56 701 aa2.08□□□□□ -2.08
VPS13A-206ENST00000376646 NENFQ9UMX5 172 aa2.08□□□□□ -2.08
VPS13A-206ENST00000376646 R3HDM2Q9Y2K5 976 aaKnown RBP2.08□□□□□ -2.08
VPS13A-206ENST00000376646 TTLL3Q9Y4R7 772 aa2.08□□□□□ -2.08
VPS13A-206ENST00000376646 IGKV3D-15A0A087WSY6 115 aa2.08□□□□□ -2.08
VPS13A-206ENST00000376646 CTAGE9A4FU28 777 aa2.08□□□□□ -2.08
VPS13A-206ENST00000376646 GOLGA6L9A6NEM1 432 aa2.08□□□□□ -2.08
VPS13A-206ENST00000376646 A8MZ25 164 aa2.08□□□□□ -2.08
VPS13A-206ENST00000376646 P4HA2O15460 535 aa2.08□□□□□ -2.08
VPS13A-206ENST00000376646 PGM3O95394 542 aa2.08□□□□□ -2.08
VPS13A-206ENST00000376646 RB1P06400 928 aa2.08□□□□□ -2.08
VPS13A-206ENST00000376646 TUBBP07437 444 aa2.08□□□□□ -2.08
VPS13A-206ENST00000376646 CD48P09326 243 aa2.08□□□□□ -2.08
VPS13A-206ENST00000376646 CTAGE8P0CG41 777 aa2.08□□□□□ -2.08
VPS13A-206ENST00000376646 EIF2DP41214 584 aaKnown RBP2.08□□□□□ -2.08
VPS13A-206ENST00000376646 CLDN20P56880 219 aa2.08□□□□□ -2.08
VPS13A-206ENST00000376646 TUBB4BP68371 445 aa2.08□□□□□ -2.08
VPS13A-206ENST00000376646 IFI35P80217 286 aaPredicted RBP2.08□□□□□ -2.08
VPS13A-206ENST00000376646 FOXM1Q08050 763 aa2.08□□□□□ -2.08
VPS13A-206ENST00000376646 EPS8Q12929 822 aa2.08□□□□□ -2.08
VPS13A-206ENST00000376646 IKQ13123 557 aaPredicted RBP2.08□□□□□ -2.08
VPS13A-206ENST00000376646 BECN1Q14457 450 aa2.08□□□□□ -2.08
VPS13A-206ENST00000376646 NAB2Q15742 525 aa2.08□□□□□ -2.08
VPS13A-206ENST00000376646 KRT24Q2M2I5 525 aa2.08□□□□□ -2.08
VPS13A-206ENST00000376646 ASTE1Q2TB18 679 aaPredicted RBP2.08□□□□□ -2.08
VPS13A-206ENST00000376646 RAB41Q5JT25 222 aa2.08□□□□□ -2.08
VPS13A-206ENST00000376646 C6orf141Q5SZD1 244 aa2.08□□□□□ -2.08
VPS13A-206ENST00000376646 ZNF772Q68DY9 489 aaPredicted RBP2.08□□□□□ -2.08
VPS13A-206ENST00000376646 ANO5Q75V66 913 aa2.08□□□□□ -2.08
VPS13A-206ENST00000376646 TICAM1Q8IUC6 712 aa2.08□□□□□ -2.08
VPS13A-206ENST00000376646 CTAGE4Q8IX94 777 aa2.08□□□□□ -2.08
Retrieved 100 of 20,778 RNA–protein pairs in 18.4 ms