RNA–Protein interactions for RNA: ENST00000374876.4

CCDC40-202, Transcript of coiled-coil domain containing 40, humanhuman

TSL 1 (best) BASIC

Gene CCDC40, Length 2,010 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-202ENST00000374876 INTS10Q9NVR2 710 aaKnown RBP15.39■□□□□ 0.05
CCDC40-202ENST00000374876 NLE1Q9NVX2 485 aaPredicted RBP15.39■□□□□ 0.05
CCDC40-202ENST00000374876 DLGAP2Q9P1A6 1054 aa15.39■□□□□ 0.05
CCDC40-202ENST00000374876 ZDBF2Q9HCK1 2354 aa15.39■□□□□ 0.05
CCDC40-202ENST00000374876 UBA6A0AVT1 1052 aaPredicted RBP15.39■□□□□ 0.05
CCDC40-202ENST00000374876 H3BNX3 289 aa15.39■□□□□ 0.05
CCDC40-202ENST00000374876 KAT7O95251 611 aa15.39■□□□□ 0.05
CCDC40-202ENST00000374876 ME2P23368 584 aa15.39■□□□□ 0.05
CCDC40-202ENST00000374876 RGRP47804 291 aa15.39■□□□□ 0.05
CCDC40-202ENST00000374876 DGKGP49619 791 aa15.39■□□□□ 0.05
CCDC40-202ENST00000374876 SUOXP51687 545 aa15.39■□□□□ 0.05
CCDC40-202ENST00000374876 TIAL1Q01085 375 aaKnown RBP eCLIP15.39■□□□□ 0.05
CCDC40-202ENST00000374876 STX5Q13190 355 aa15.39■□□□□ 0.05
CCDC40-202ENST00000374876 PPP1R3AQ16821 1122 aa15.39■□□□□ 0.05
CCDC40-202ENST00000374876 TYSND1Q2T9J0 566 aa15.39■□□□□ 0.05
CCDC40-202ENST00000374876 UNC50Q53HI1 259 aa15.39■□□□□ 0.05
CCDC40-202ENST00000374876 CLEC6AQ6EIG7 209 aa15.39■□□□□ 0.05
CCDC40-202ENST00000374876 PDSS2Q86YH6 399 aa15.39■□□□□ 0.05
CCDC40-202ENST00000374876 PTGR2Q8N8N7 351 aaPredicted RBP15.39■□□□□ 0.05
CCDC40-202ENST00000374876 WFDC5Q8TCV5 224 aa15.39■□□□□ 0.05
CCDC40-202ENST00000374876 AARSD1Q9BTE6 412 aaKnown RBP15.39■□□□□ 0.05
CCDC40-202ENST00000374876 LRFN3Q9BTN0 628 aa15.39■□□□□ 0.05
CCDC40-202ENST00000374876 FBXO10Q9UK96 956 aa15.39■□□□□ 0.05
CCDC40-202ENST00000374876 ARIH1Q9Y4X5 557 aaPredicted RBP15.39■□□□□ 0.05
CCDC40-202ENST00000374876 SPO11Q9Y5K1 396 aa15.39■□□□□ 0.05
CCDC40-202ENST00000374876 ILVBLA1L0T0 632 aa15.38■□□□□ 0.05
CCDC40-202ENST00000374876 TBC1D3BA6NDS4 549 aa15.38■□□□□ 0.05
CCDC40-202ENST00000374876 C2orf81A6NN90 581 aa15.38■□□□□ 0.05
CCDC40-202ENST00000374876 PRR33A8MZF0 331 aa15.38■□□□□ 0.05
CCDC40-202ENST00000374876 PSMD12O00232 456 aaPredicted RBP15.38■□□□□ 0.05
CCDC40-202ENST00000374876 CBX4O00257 560 aa15.38■□□□□ 0.05
CCDC40-202ENST00000374876 XRCC1P18887 633 aaPredicted RBP15.38■□□□□ 0.05
CCDC40-202ENST00000374876 PEX2P28328 305 aa15.38■□□□□ 0.05
CCDC40-202ENST00000374876 ZNF140P52738 457 aaPredicted RBP15.38■□□□□ 0.05
CCDC40-202ENST00000374876 XIAPP98170 497 aa15.38■□□□□ 0.05
CCDC40-202ENST00000374876 CCINQ13939 588 aa15.38■□□□□ 0.05
CCDC40-202ENST00000374876 CEACAM7Q14002 265 aa15.38■□□□□ 0.05
CCDC40-202ENST00000374876 FASTKQ14296 549 aaKnown RBP15.38■□□□□ 0.05
CCDC40-202ENST00000374876 MMEL1Q495T6 779 aa15.38■□□□□ 0.05
CCDC40-202ENST00000374876 AFTPHQ6ULP2 937 aa15.38■□□□□ 0.05
CCDC40-202ENST00000374876 CARNMT1Q8N4J0 409 aa15.38■□□□□ 0.05
CCDC40-202ENST00000374876 RNF148Q8N7C7 305 aa15.38■□□□□ 0.05
CCDC40-202ENST00000374876 TMEM105Q8N8V8 129 aa15.38■□□□□ 0.05
CCDC40-202ENST00000374876 HJURPQ8NCD3 748 aaPredicted RBP15.38■□□□□ 0.05
CCDC40-202ENST00000374876 RHEBL1Q8TAI7 183 aa15.38■□□□□ 0.05
CCDC40-202ENST00000374876 GATA6Q92908 595 aa15.38■□□□□ 0.05
CCDC40-202ENST00000374876 CCDC68Q9H2F9 335 aa15.38■□□□□ 0.05
CCDC40-202ENST00000374876 POLR3BQ9NW08 1133 aaPredicted RBP15.38■□□□□ 0.05
CCDC40-202ENST00000374876 UTP6Q9NYH9 597 aaKnown RBP15.38■□□□□ 0.05
CCDC40-202ENST00000374876 STX16-NPEPL1H3BU86 382 aa15.38■□□□□ 0.05
CCDC40-202ENST00000374876 K7EQS6 105 aa15.38■□□□□ 0.05
CCDC40-202ENST00000374876 RHOBTB1O94844 696 aa15.38■□□□□ 0.05
CCDC40-202ENST00000374876 PRSS56P0CW18 603 aa15.38■□□□□ 0.05
CCDC40-202ENST00000374876 SEC13P55735 322 aa15.38■□□□□ 0.05
CCDC40-202ENST00000374876 PTK2BQ14289 1009 aa15.38■□□□□ 0.05
CCDC40-202ENST00000374876 TAF1AQ15573 450 aaPredicted RBP15.38■□□□□ 0.05
CCDC40-202ENST00000374876 AGKQ53H12 422 aa15.38■□□□□ 0.05
CCDC40-202ENST00000374876 GRAMD4Q6IC98 578 aa15.38■□□□□ 0.05
CCDC40-202ENST00000374876 Q6ZS52 159 aa15.38■□□□□ 0.05
CCDC40-202ENST00000374876 APLFQ8IW19 511 aaPredicted RBP15.38■□□□□ 0.05
CCDC40-202ENST00000374876 OR4K2Q8NGD2 314 aa15.38■□□□□ 0.05
CCDC40-202ENST00000374876 TFB2MQ9H5Q4 396 aaKnown RBP15.38■□□□□ 0.05
CCDC40-202ENST00000374876 SYTL2Q9HCH5 934 aa15.38■□□□□ 0.05
CCDC40-202ENST00000374876 ZDHHC4Q9NPG8 344 aa15.38■□□□□ 0.05
CCDC40-202ENST00000374876 C6orf203Q9P0P8 240 aaPredicted RBP15.38■□□□□ 0.05
CCDC40-202ENST00000374876 PSMD13Q9UNM6 376 aa15.38■□□□□ 0.05
CCDC40-202ENST00000374876 A0A1B0GVM2 712 aa15.37■□□□□ 0.05
CCDC40-202ENST00000374876 CCDC189A1A4V9 331 aa15.37■□□□□ 0.05
CCDC40-202ENST00000374876 TYW5A2RUC4 315 aaKnown RBP15.37■□□□□ 0.05
CCDC40-202ENST00000374876 UBXN8O00124 270 aa15.37■□□□□ 0.05
CCDC40-202ENST00000374876 CASQ2O14958 399 aaPredicted RBP15.37■□□□□ 0.05
CCDC40-202ENST00000374876 NDUFS3O75489 264 aa15.37■□□□□ 0.05
CCDC40-202ENST00000374876 APODP05090 189 aa15.37■□□□□ 0.05
CCDC40-202ENST00000374876 DRD1P21728 446 aa15.37■□□□□ 0.05
CCDC40-202ENST00000374876 CES1P23141 567 aa15.37■□□□□ 0.05
CCDC40-202ENST00000374876 PAX7P23759 505 aa15.37■□□□□ 0.05
CCDC40-202ENST00000374876 HLA-FP30511 346 aa15.37■□□□□ 0.05
CCDC40-202ENST00000374876 FMO4P31512 558 aa15.37■□□□□ 0.05
CCDC40-202ENST00000374876 MSX2P35548 267 aaPredicted RBP15.37■□□□□ 0.05
CCDC40-202ENST00000374876 EIF2DP41214 584 aaKnown RBP15.37■□□□□ 0.05
CCDC40-202ENST00000374876 GRIA2P42262 883 aa15.37■□□□□ 0.05
CCDC40-202ENST00000374876 DPP6P42658 865 aa15.37■□□□□ 0.05
CCDC40-202ENST00000374876 CDH13P55290 713 aa15.37■□□□□ 0.05
CCDC40-202ENST00000374876 OR4D1Q15615 310 aa15.37■□□□□ 0.05
CCDC40-202ENST00000374876 PFKFB4Q16877 469 aa15.37■□□□□ 0.05
CCDC40-202ENST00000374876 GEN1Q17RS7 908 aa15.37■□□□□ 0.05
CCDC40-202ENST00000374876 ZFP1Q6P2D0 407 aa15.37■□□□□ 0.05
CCDC40-202ENST00000374876 CHST9Q7L1S5 443 aa15.37■□□□□ 0.05
CCDC40-202ENST00000374876 MFN1Q8IWA4 741 aa15.37■□□□□ 0.05
CCDC40-202ENST00000374876 CLYBLQ8N0X4 340 aa15.37■□□□□ 0.05
CCDC40-202ENST00000374876 PQLC1Q8N2U9 271 aa15.37■□□□□ 0.05
CCDC40-202ENST00000374876 C19orf60Q96EN9 201 aa15.37■□□□□ 0.05
CCDC40-202ENST00000374876 NSMCE3Q96MG7 304 aa15.37■□□□□ 0.05
CCDC40-202ENST00000374876 TDRD1Q9BXT4 1180 aaKnown RBP15.37■□□□□ 0.05
CCDC40-202ENST00000374876 MUC3BQ9H195 1237 aa15.37■□□□□ 0.05
CCDC40-202ENST00000374876 TAS2R13Q9NYV9 303 aa15.37■□□□□ 0.05
CCDC40-202ENST00000374876 ADA2Q9NZK5 511 aa15.37■□□□□ 0.05
CCDC40-202ENST00000374876 CCDC167Q9P0B6 97 aa15.37■□□□□ 0.05
CCDC40-202ENST00000374876 PRRT4C9JH25 899 aa15.36■□□□□ 0.05
CCDC40-202ENST00000374876 H0Y626 953 aa15.36■□□□□ 0.05
Retrieved 100 of 20,778 RNA–protein pairs in 38.3 ms